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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16006#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1371 fasta sequence
[CCGAGTCTCCACCCATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC-GGCGATGGC-GGCGAGGTCC-GGCGAGGTGC-GGGC-GAC-GGTGCTGGGCATGGC-GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGCCGGCGCGG-N-T-GCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT-GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCC-GGCGTCGG-TGC-TGGCGTCGGCGCTGGCGT-AGGTGCGAAGGTCGGTGC-T-GGCGTCGGTGCGAAGGTCGGTGCTGGCGCC-GGCGTTGGAGCACGCGCTGGCG-TTGGTGCGAACGTCGGTGCTGGCGTCGGTGCGAAGGTTGGTGCTGGCGTCGGCGTTGGCGCTGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTCGGCGTTGGCGCTGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTTGGTGCGAAGGTCGGCGCTGGCGTTGGTGCTGGCGTCGGCGCCGGCGTCGGCGCTGGAGCTCGCGTTGGCATCGGTGCTAACGTCGGTGCTGGCGCTGGTACGGGCGTCGGCGCTGGTGCTGGCGCTGGCGCTGGCGCAGGAGTCGGCGCTGGCGCTCGCGCCGGCATCGGTGCTAACGTCGGTGCGAACGTCGGCGCTGGCGTCGGCGCTGGTGCTGGTGCTGGCGCTGGCGCTGGTGC-GGGAGTCGGCGCTGGAGCTCGCGCTGGCATCGGAGCTAACGTCGGTGCCAACGTC-GGCGCCGGCGTCGGCGCTGGTGCTGGTGCTGGTGCTGGCGCTGGTGCGGGAGTCGGCGCTCGCGCCGGCATCGGTGCCAAC-GTCGGTGCCAACGTCGGCGCTGGCGCCGGCGCTGGCGCTGGTGCGGGCATCGGCGCCAACGTCGGTGCCAACGTCGGCGCCAACGTCGGCGCCGGCGTGGGCGTGCGCGCGAACAGGCAGAACAGCTTCAGCATGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTGATCCTTCACACGCGGCCGCATCAAACTGATGATTCTTAGTCCGGCTTCGTGTTGATCTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGATTTTAAAAAAAAAAAA]
[+] EMBL AK071325 [CCGAGTCTCCACCCATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGACGGCGCGGNN T GCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCC GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AGGTGCGAAGGTCGGTGC T GGCGTCGGTGCGAAGGTCGGTGCTGGCGCC GGCGTTGGAGCACGCGCTGGCG TTGGTGCGAACGTCGGTGCTGGCGTCGGTGCGAAGGTTGGTGCTGGCGTCGGCGTTGGCGCTGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTCGGCGTTGGCGCTGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTTGGTGCGAAGGTCGGCGCTGGCGTTGGTGCTGGCGTCGGCGCCGGCGTCGGCGCTGGAGCTCGCGTTGGCATCGGTGCTAACGTCGGTGCTGGCGCTGGTACGGGCGTCGGCGCTGGTGCTGGCGCTGGCGCTGGCGCAGGAGTCGGCGCTGGCGCTCGCGCCGGCATCGGTGCTAACGTCGGTGCGAACGTCGGCGCTGGCGTCGGCGCTGGTGCTGGTGCTGGCGCTGGCGCTGGTGC GGGAGTCGGCGCTGGAGCTCGCGCTGGCATCGGAGCTAACGTCGGTGCCAACGTC GGCGCCGGCGTCGGCGCTGGTGCTGGTGCTGGTGCTGGCGCTGGTGCGGGAGTCGGCGCTCGCGCCGGCATCGGTGCCAAC GTCGGTGCCAACGTCGGCGCTGGCGCCGGCGCTGGCGCTGGTGCGGGCATCGGCGCCAACGTCGGTGCCAACGTCGGCGCCAACGTCGGCGCCGGCGTGGGCGTGCGCGCGAACAGGCAGAACAGCTTCAGCATGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTGATCCTTCACACGCGGCCGCATCAAACTGATGATTCTTAGTCCGGCTTCGTGTTGATCTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGAT ]
[+] EMBL AK100437 [CCAAGTCTCCATCCATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGCCGGCGCCG G T GCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCC GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AGGTGCGAAGGTCGGTGC T GGCGTCGGTGCGAAGGTCGGTGCTGGCGCC GGCGTTGGAGCACGCGCTGGCG TTGGTGCGAACGTCGGTGCTGGCGTCGGTGCGAAGGTTGGTGCTGGCGTCGGCGTTGGCGCTGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTCGGCGTTGGCGCTGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTTGGTGCGAAGGTCGGCGCTGGCGTTGGTGCTGGCGTCGGCGCCGGCGTCGGCGCTGGAGCTCGCGTTGGCATCGGTGCTAACGTCGGTGCTGGCGCTGGTACGGGCGTCGGCGCTGGTGCTGGCGCTGGCGCTGGCGCAGGAGTCGGCGCTGGCGCTCGCGCCGGCATCGGTGCTAACGTCGGTGCGAACGTCGGCGCTGGCGTCGGCGCTGGTGCTGGTGCTGGCGCTGGCGCTGGTGC GGGAGTCGGCGCTGGAGCTCGCGCTGGCATCGGAGCTAACGTCGGTGCCAACGTC GGCGCCGGCGTCGGCGCTGGTGCTGGTGCTGGTGCTGGCGCTGGTGCGGGAGTCGGCGCTCGCGCCGGCATCGGTGCCAAC GTCGGTGCCAACGTCGGCGCTGGCGCCGGCGCTGGCGCTGGTGCGGGCATCGGCGCCAACGTCGGTGCCAACGTCGGCGCCAACGTCGGCGCCGGCGTGGGCGTGCGCGCGAACAGGCAGAACAGCTTCAGCATGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTGATCCTTCACACGCGGCCGCATCAAACTGATGATTCTTAGTCCGGCTTCGTGTTGATCTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGAT ]
[+] EMBL AU163602 [ ACCCATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAAC GNAGNACNGGCGCCGGC NGG N TAGCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCG GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AAGTGCGAAAGTCGGTGC T GGCGTCGGTNCGAAAGTCGGTGCTGGCG C GGCGTTTGAACANGCGCTTGCG ]
[+] EMBL C72788 [ CCCATCAAGATTGCAGTAATAATCCAAGCTCAATAAACNANCCAATCCGTCGAANAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCNGCCATCGANGCCAACNTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGCCGGCGCGG T T GCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCTGGGCGTCGGCGCTGGCATCGGAG TAACGTCGGCGTTGGCGCTCGCGCCGGGCGTCGGTTGCTTGGCGTCNGCGCTNGCGTAAGTTGCGAAGTTCGGTGC TNGGCCTTGGTTCGAA ]
[+] EMBL AU182460 [ CATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGCAGGCGATGGCAGGCGAGGTCCAGGCGAGGTGCAGGGCAGACAGGTGCTGGGCATGGCAGGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGCCGGCGCCG G T GCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCC GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AGGTGCGAAGGTCGGTGC T GGCGTCGGTGCNAAGGTCGGTGCTGGCGCC GGCGTTGGAGCACGCGCTGGCG T ]
[+] EMBL AU069721 [ CATCAANATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC AAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTNCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCNANGCCAGCTTCAGCCTGAACGGNGGCG CGGCGCCGGCGCCG N TNNCTCGNCCTGGCNCTGGTGCTGGCGCTGGCG ]
[+] EMBL AU063780 [ CATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC NAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTNCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTNAACGGCGGCGCCGGCGCCGGCGCGG N T GCTCGCNCTGG ]
[+] EMBL AU063779 [ CATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCNTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC NAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTNCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACNTCGGCNTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGC ]
[+] EMBL AU069707 [ CATCAANATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCNTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCNAGGTGC GGGC AAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTCCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACNTCGGCNTCACCCGCNAGGCCAGCTTCAGCNTGAACGGCGGCG ]
[+] EMBL AU069695 [ CATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC AAC GGTNCTGGGCATGGC GGTGCTGGCGCTGCTTCTNCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACNTCGGCNTCACCCGCNAGGC ]
[+] EMBL C98895 [ AGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAAC GNGGNGCCGGCGCCGGCGCGG T T GCTCGCGCTGGCG TGGTGCTGGCG TGGCG T GGCGTCGGCG TGGCATCGGAG TAACGTCGGCGTTGGCGCTCGCG C GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AAGTGCGAA GTCGGTGT N GGCGTCGGTGCGAA GTCGGTGCTGGCGCCGGGCGTTNGAGCAAGCGtt ]
[+] EMBL C73245 [ TGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC NAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGNGGNG CGGCGCCGGCGCGG N T GCTCGCNNTGGCGCTGGTGCTGGCGCTGGCGCT GG ]
[+] EMBL AU163610 [ GCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGNAGG NACGGCGCCGGC CGG NTT GCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCG GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AAGTTCNAAGt ]
[+] EMBL AU163546 [ AGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGNGGCG CNGCGCCGNCGCGG N TNGCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCC GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AGGTGCGAAGGTCGGTGCTT GGCGTCGGTGCGAAGGTCGGTGCTNGCGCC GGCGTTGGAGCACGCGCTNGCGTTTGGTGC ]
[+] EMBL C93645 [ AGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCG CGGCGCCGGCGC G N TNGCTCGCNCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTNGCGCTCGCG C GGCGTCGG TGC TGGCGTNGGCGCTGGCGT AGGTGCGAAGGTCGGTGCTT GGCGTCGGTNCGAAGGTC ]
[+] EMBL AU063827 [ AGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC AAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCNTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCG CGGCGCCGGCGCGG T N GCTCGCNCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCNTTGGCGCTCGCGCC GGCNTCGG TGC TGGCGTCGGCGC ]
[+] EMBL AU182484 [ AGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCGAGGTGC GGGC GAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGCCGGCGCCG G T GCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCC GGCGTCGG TGC TGGCGTCGGCGCTGGCGT AGGTGCGAAGGTCGGTGC T GGCGTCGGTGCGAAGGTCGGTGCTGGCGCC GGCGTTGGAGCACGCGCTGGCG TTGGTGCGAACGTCGGTGCTGGCGTCGGTGCGAAGGTTGGTGCTGGCGT ]
[+] EMBL C98435 [ AAACGAGCCAATCCGTCGAAGAAGGAAGCAGC GGCGATGGC GGCGAGGTCC GGCNAGGTGC GGGC AAC GGTGCTGGGCATGGC GGTGCTGGCGCTGCTTCTNCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCNAGGCCAGCTTCAGCCTGAACGGCGGCGCCGNCGCCGGCNCGA T N NCTCGCNCTGGCNCTGGTGCTGGCGCTGGCGCT GGCGTCGGCGCTGGCATCGAAGCTAACGTCGGCnt ]
[+] EMBL AU197226 [ GGCGTCGGTGCGAAGGTCGGTGCTGGCGTTGGTGCGAAGGTCGGCGCTGGCGTTGGTGCTGGCGTCGGCGCCGGCGTCGGC CTGGAGCTCGCGTTGGCATCGGTGCTAACGTCGGTGCTGGCGCTGGTACGGGCGTCGGCGCTGGTGCTGGCGCTGGCGCTGGCGCAGGAGTCGGCGCTGGCGCTCGCGCCGGCATCGGTGCTAACGTCGGTGCGAACGTCGGCGCTGGCGTCGGCGCTGGTGCTGGTGCTGGCGCTGGCGCTGGTGCGGGGAGTCGGCGCTGGAGCTCGCGCTGGCATCGGAGCTAACGTCGGTGCCAACGTCGGGCGCCGGCGTCGGCGCTGGTGCTGGTGCTGGTGCTGGCGCTGGTGNGGGAGTCGGCGCTCGCGCCGGCATCNGTGCCAACGGTCGGTGCCAACGTCGGCACTGGCng ]
[+] EMBL AU197297 [ GGCGTCGGCGCTGGTGCTGGTGCTGGCGCTGGCGCTGGTGC GGGAGTCGGCGCTGGAGCTCGCGCTGGCATCGGAGCTAACGTCGGTGCCAACGTC GGCGCCGGCGTCGGCGCTGGTGCTGGTGCTGGTGCTGGCGCTGGTGCGGGAGTCGGCGCTCGCGCCGGCATCGGTGCCAAC GTCGGTGCCAACGTCGGCGCTGGCGCCGGCGCTGGCGCTGGTGCGGGCATCGGCGCCAACGTCGGTGCCAACGTCGGCGCCAACGTCGGCGCCGGCGTGGGCGTGCGCGCGAACAGGCAGAACAGCTTCAGCATGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTG ]
[+] EMBL AU182571 [ GATGATTCTTAGTCCGGCTTCGTGTTGATCTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGATTTTAAAAAAAAAAAA]
consensusID : consensus_16006#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 453 fasta sequence
[TGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGCGGCGATGGCGGCGAGGTCCGGCGAGGTGCGGGCGACGGTGCTGGGCATGGCGGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGCCGGCGCCGGTGCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCTGGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCCGGCGCTGGCGCTGGTGCGGGCATCGGCGCCAACGTCGGTGCCAACGTCGGCGCCAACGTCGGCGCCGGCGTGGGCGTGCGCGCGAACAGGCAGAACAGCTTCAGCATGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTGA]
[+] EMBL AU082113 [TGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGCGGCGATGGCGGCGAGGTCCGGCGAGGTGCGGGCGACGGTGCTGGGCATGGCGGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCGTCACCCGCCAGGCCAGCTTCAGCCTGAACGGCGGCGCCGGCGCCGGCGCCGGTGCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCTGGCGTCGGCGCTGGCATCGGAGCTAACGTCGGCGTTGGCGCTCGCGCCGGCGCTGGCGCTGGTGCGGGCATCGGCGCCAACGTCGGTGCCAACGTCGGCGCCAACGTCGGCGCCGGCGTGGGCGTGCGCGCGAACAGGCAGAACAGCTTCAGCATGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTGA]
[+] EMBL C71674 [TGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCGTCGAAGAAGGAAGCAGCGGCGATGGCGGCGAGGTCCGGCGAGGTGCGGGCAACGGTGCTNGGCATGGCGGTGCTGGCGCTGCTTCTCCTGCTCGGCCACCACGCGGCGGCCATCGAGGCCAACGTCGGCNTCACCCGCCAGGCCAGCTTCA ]
consensusID : consensus_16006#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 310 fasta sequence
[CTATATACNAAAGGAAATTTTCTAAAAAAANANAAAAAAAAGGGCGGCCGCATCAAACTGATGATTCTTAGTCCGGCTTCGTGTTGAT-CTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGATTTTAACTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU197359 [CTATATACNAAAGGAAATTTTCTAAAAAAANANAAAAAAAAGGGCGGCCGCATCAAACTGATGATTCTTAGTCCGGCTTCGTGTTGAT CTNCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGATTTTAACTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU182536 [ GATGATTCTTAGTCCGGCTTCGTGTTGATCCTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGATTTTAACTGTTAAAAAAAAA ]
[+] EMBL AU101258 [ ATGATTCTTAGTCCGGCTTCGTGTTGAT CTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATATAGCGATTTTAACTGTTAAAAA ]
[+] EMBL AU076166 [ tnTTGAT CTTCCTGATTAATTTTGTTCGNGTGTTTTTAATNATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCNGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATATATAAATATATATNTAGCGATTTTAACTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16006#0 CCGAGTCTCCACCCATCAAGATTGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCG 60
consensus_16006#1 ----------------------TGCAGTAATAATCCAAGCTCAATAAACGAGCCAATCCG 38
consensus_16006#2 -----------------------------------------CTATATACNAAAGGAAATT 19
* *** ** * *
consensus_16006#0 TCGAAGAAGGAAGCAGCGGCGATGGCGGCGAGGTCCGGCGAGGTGCGGGCGACGGTGCTG 120
consensus_16006#1 TCGAAGAAGGAAGCAGCGGCGATGGCGGCGAGGTCCGGCGAGGTGCGGGCGACGGTGCTG 98
consensus_16006#2 TTCTAAAAAAANANAAAAAAAAGGGCGGCCGCATCAAAC----------TGATGATTCTT 69
* * ** * * * ****** ** * ** * * **
consensus_16006#0 GGCATGGCGGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCC 180
consensus_16006#1 GGCATGGCGGTGCTGGCGCTGCTTCTGCTGCTCGGCCACCACGCGGCGGCCATCGAGGCC 158
consensus_16006#2 AGTCCGGC----TTCGTGTTGATCTTCCTGATTAATT-TTGTTCGTGTGTTTTTAATTAT 124
* *** * * * ** * * *** * ** * * *
consensus_16006#0 AACGTCGGCGTCACCCGCCAGGCCAGCTTCA-GCC-TGAACGGCGGCGCCGGCGCCGGCG 238
consensus_16006#1 AACGTCGGCGTCACCCGCCAGGCCAGCTTCA-GCC-TGAACGGCGGCGCCGGCGCCGGCG 216
consensus_16006#2 TTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCA 184
* ** * *** * ** *** ** * * *** * *
consensus_16006#0 CGGNTGCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCTGGCGTCGGCGCTGGCATCGGAG 298
consensus_16006#1 CCGGTGCTCGCGCTGGCGCTGGTGCTGGCGCTGGCGCTGGCGTCGGCGCTGGCATCGGAG 276
consensus_16006#2 TCGAATCATTCAGTG-TTCTTGTGTTTGTAATCTCTTGTTCTTCTTCG-TGATCTCGGAG 242
* * * ** ** *** * * * * * ** ** ** ******
consensus_16006#0 CTAACGTCGGCGTTGGCGCTCGCGCCGGCGTCGGTGCTGGCGTCGGCGCTGGCGTAGGTG 358
consensus_16006#1 CTAACGTCGGCGTTGGCGCTCGCGCCGGCG------CTGGCGCTGGTGCGGGCATCGGCG 330
consensus_16006#2 ATA-TATAAATATATATA-TAGCGATTTTA--------ACTGTTAAAAAAAAAAAAAAAA 292
** * * * *** *
consensus_16006#0 CGAAGGTCGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGCCGGCGTTGGAGCACGCG 418
consensus_16006#1 CCAACGTCGGTGCCAACGTCGGCGCCAACGTCGGCGCCGGCGTGGGCGT--GCGCGCGAA 388
consensus_16006#2 AAAAAAAAAAAAAAAAAA------------------------------------------ 310
**
consensus_16006#0 CTGGCGTTGGTGCGAACGTCGGTGCTGGCGTCGGTGCGAAGGTTGGTGCTGGCGTCGGCG 478
consensus_16006#1 CAGGCA---GAAC-AGCTTCAGCATGAACAGCG-CGTGACCGTC--TGATACCACCAACC 441
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 TTGGCGCTGGTGCTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTCGGCGTTGGCGCTGGTG 538
consensus_16006#1 CCGGC--TGGT--TGA-------------------------------------------- 453
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 CTGGCGTCGGTGCGAAGGTCGGTGCTGGCGTTGGTGCGAAGGTCGGCGCTGGCGTTGGTG 598
consensus_16006#1 ------------------------------------------------------------
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 CTGGCGTCGGCGCCGGCGTCGGCGCTGGAGCTCGCGTTGGCATCGGTGCTAACGTCGGTG 658
consensus_16006#1 ------------------------------------------------------------
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 CTGGCGCTGGTACGGGCGTCGGCGCTGGTGCTGGCGCTGGCGCTGGCGCAGGAGTCGGCG 718
consensus_16006#1 ------------------------------------------------------------
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 CTGGCGCTCGCGCCGGCATCGGTGCTAACGTCGGTGCGAACGTCGGCGCTGGCGTCGGCG 778
consensus_16006#1 ------------------------------------------------------------
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 CTGGTGCTGGTGCTGGCGCTGGCGCTGGTGCGGGAGTCGGCGCTGGAGCTCGCGCTGGCA 838
consensus_16006#1 ------------------------------------------------------------
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 TCGGAGCTAACGTCGGTGCCAACGTCGGCGCCGGCGTCGGCGCTGGTGCTGGTGCTGGTG 898
consensus_16006#1 ------------------------------------------------------------
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 CTGGCGCTGGTGCGGGAGTCGGCGCTCGCGCCGGCATCGGTGCCAACGTCGGTGCCAACG 958
consensus_16006#1 ------------------------------------------------------------
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 TCGGCGCTGGCGCCGGCGCTGGCGCTGGTGCGGGCATCGGCGCCAACGTCGGTGCCAACG 1018
consensus_16006#1 ------------------------------------------------------------
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 TCGGCGCCAACGTCGGCGCCGGCGTGGGCGTGCGCGCGAACAGGCAGAACAGCTTCAGCA 1078
consensus_16006#1 ------------------------------------------------------------
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 TGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTGATCCTTCACACGCGGC 1138
consensus_16006#1 ------------------------------------------------------------
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 CGCATCAAACTGATGATTCTTAGTCCGGCTTCGTGTTGATCTTCCTGATTAATTTTGTTC 1198
consensus_16006#1 ------------------------------------------------------------
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 GTGTGTTTTTAATTATTTTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCA 1258
consensus_16006#1 ------------------------------------------------------------
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 GGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTGTGTTTGTAATCTCTTGTTCTTCT 1318
consensus_16006#1 ------------------------------------------------------------
consensus_16006#2 ------------------------------------------------------------
consensus_16006#0 TCGTGATCTCGGAGATATATAAATATATATATAGCGATTTTAAAAAAAAAAAA 1371
consensus_16006#1 -----------------------------------------------------
consensus_16006#2 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||