These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 844 fasta sequence [CTTTTTTTTTAACAGTACTCCATCAATAGCAACATATATACTCCAGTCCATACTCCATAGCAACATACGGAAAGCTAAAGTTTTAGAGGTCCAGAGGACTAAGGAGAGAGCGAGACAAGTAAGAAACAATGAGACTTTTTGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC-AAGATTGCCATCC-AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA-ACAAA-CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT-CCTTATTTGTGAAGA-TCATTCA-TTTGAAGT-AAAACCCTGAGAGGCTACT-CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT-AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG-TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG-CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC-TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGATGGAGAGGACTGTGGA] [+] EMBL CB621731 [CTTTTTTTTTAACAGTACTCCATCAATAGCAACATATATACTCCAGTCCATACTCCATAGCAACATACGGAAAGCTAAAGTTTTAGAGGTCCAGAGGACTAAGGAGAGAGCGAGACAAGTAAGAAACAATGAGACTCCATGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATAAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCT ] [-] EMBL CB621730 [ ACATATATACTCCAGTCCATACTCCATAGCAACATACGGAAAGCTAAAGTTTTAGAGGTCCAGAGGACTAAGGAGAGAGCGAGACAAGTAAGAAACAATGAGACTCCATGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATAAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTGGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGGAGTCG ] [-] EMBL AU092681 [ TTTTTGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACGCCCGNCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTTCACCGGCGCGCTGCTTCGCCGACATNCCTGCGTGCGGCGCGGC ] [+] EMBL CF277096 [ tTTTTTGAAACGTTGCAAATTATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTATTCATCCGAAAAGAAAAATTCTGTTAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGGGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGGTTTGGGGTCC ] [+] EMBL CF331155 [ tTTTTTGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGA ] [-] EMBL CF331156 [ TTTTTGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGA ] [+] EMBL CB660094 [ ACGTTGCAAATCATAAGAGTAACATCATCGACCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGATGGAGAGGACTGTGGA] [+] EMBL CB660056 [ CGTTGCAAATCATAAGAGTAACATCATCGATCCTTTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGCGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGATGGAGAGGACTGTGGA] [-] EMBL CB660091 [ CGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGAGGGAGAGG ] [-] EMBL CB660055 [ AATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAAC AAGATTGCCATCC AACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACA ACAAA CATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTTGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGAGGGAGAGG ] [-] EMBL CF281771 [ GACTCAAGACAACAAAGATTGCCATCCAAACTCAAACAGTGTTG TGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACANACAAANCATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGATGGAGA ] [-] EMBL AU070526 [ CTTTTTCTCCCTTATTTGTGAAGATTCATTCATTTTGAAGTAAAAACCCTGAGAGGCTACTCCAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGT ] [-] EMBL OSS3653A [ TTTTTCT CCTTATTTGTGAAGA TCATTCA TTTGAAGT AAAACCCTGAGAGGCTACT CAGATACGGGGCATGAACTCTTAAAATCTTGCTGCTCCTTACGACAGAAGTNAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCANCGACGAGGTNGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCNGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGG ] [-] EMBL CF301074 [ T CAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGG ] [-] EMBL OSS1901A [ aAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAAGTAATACATGCAGCCGGAATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGNACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGT ] [-] EMBL OSS3074A [ CCTTACGACAGAAGTCAAATTCGTTGNTGT AGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCAACGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGG ] [-] EMBL C27788 [ CTTACCACANAAGTTAAATTCGTTGGTGT AGTAATACATGCAGCCGGAATAGCCGTCNATCTCCTTGGGNCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGNACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCANCGACGAGGTNGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCNGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCG ] [-] EMBL OS0584A [ GTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGNCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCANCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGA GGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGATGGAGAGGAC ] [-] EMBL AU066069 [ TCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGT ] [-] EMBL OSS3159A [ TCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACG CCGCCATCAGCAACGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGC TCGCCGACATCCCTGCGTGCGGCGCNGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGG ] consensusID : consensus_16010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 703 fasta sequence [TTTTTTTTTTTTAAG-AACAATGAGACTCCATGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATAAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACT-TGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTC-AGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG-TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACGCCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGCTCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGG] [-] EMBL BE039977 [TTTTTTTTTTTTAAG AACAATGAGACTCCATGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATAAANAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACT TGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTC AGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACGCCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGCTCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGG] [-] EMBL CA758890 [TTTTTTTTTTTTAAG AACAATGAGACTCCATGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATAAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACT TGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTC AGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACGCCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGCTCGCCGACATCCCTGCGTGCGGCGCGGCGGGCCTCGAGGGCTTCTCGCCTTGGAGATCTGAGG] [+] EMBL CF281772 [ TTTTTTGTAAGAAACAATGAGACTCCATGAAACGTTGCAAATCATAAGAGTAACGTCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGATAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACT TGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTC AGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTCGAGGCACTTCTGCGGGNTTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGGCGATGTGCTTCGACGCCGCCATCAGCACCGACGAGGTCGGGATCGGATCCCCCGATGCGTCCACCGGCGCGCTGCTCGCCGACA ] [-] EMBL BI794861 [ tttttttttTGACTCAAGACAACAAGATTG CATCCAACTCAAACAGTGTTGTTGA TGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATAAAAAGCTCAGAGGGGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACTGTGG TTGTCGGCTTTTTCTCCTTA TTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTC AGATACGGGGCATGCACTCTCAAAATCTTGCTG TCCTTACGACAGAAGTCAAATTCG TGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTG ] [-] EMBL C74072 [ nCATTT AAGT AAACCTTNAGA GCTACTCAAAATAC GGGCATGCACTCTAANAATCTTGCTGCTCCTTACGACAGAAGTCAAATNCGTTGGTGTAGTAATACATGNAG CGGCATAGGCGTCCATCTCCTTGGGGCACTTCTGGTNAAG TCTTTCAACAGGTCGAAGACNCAGCGCTTGACNTGACGGACCTTCTCGAGGCACTTCTGCGGG TTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGGCCTGCACCGCACGNCGATGTGCTTCGACGCCGCCATCAGCATCGACGAGGTCGGGANCGGATCCCCCGATGCGTCCACCGGCGCGCTGCTCGCCGACATCCCTGCGTGCGNCGCGGCGGGCCTCGAGGGCTTCTCGC ] consensusID : consensus_16010#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [TTTTTTTTTTTTTTTTTTTTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAANCAGGATGAAAAGCTCANAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTCAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGNATAGGNGTCCATCTCCTTGGGGNACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGNTTGGACCTGGNGGCCC] [-] EMBL AU029412 [TTTTTTTTTTTTTTTTTTTTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAANCAGGATGAAAAGCTCANAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTCAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGNATAGGNGTCCATCTCCTTGGGGNACTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGNTTGGACCTGGNGGCCC] consensusID : consensus_16010#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [TTTTTTTTTTTTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTCAAATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCC] [+] EMBL CF298984 [TTTTTTTTTTTTTGCAAATCATAAGAGTAACATCATCGATCAACTTATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTGTTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGCGTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGAACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCTGAGAGGCTACTCAAATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAAGTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16010#0 CTTTTTTTTTAACAGTACTCCATCAATAGCAACATATATACTCCAGTCCATACTCCATAG 60 consensus_16010#3 ------------------------------------------------------------ consensus_16010#1 ------------------------------------------------------------ consensus_16010#2 ------------------------------------------------------------ consensus_16010#0 CAACATACGGAAAGCTAAAGTTTTAGAGGTCCAGAGGACTAAGGAGAGAGCGAGACAAGT 120 consensus_16010#3 ------------------------------------------------------------ consensus_16010#1 -------------------------------------------------TTTTTTTTTTT 11 consensus_16010#2 ------------------------------------------------------------ consensus_16010#0 AAGAAACAATGAGACTTTTTGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACT 180 consensus_16010#3 ---------------TTTTTTTTTTTTTGCAAATCATAAGAGTAACATCATCGATCAACT 45 consensus_16010#1 TAAGAACAATGAGACTCCATGAAACGTTGCAAATCATAAGAGTAACATCATCGATCAACT 71 consensus_16010#2 ------------------------------------------------------------ consensus_16010#0 TATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTG 240 consensus_16010#3 TATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTG 105 consensus_16010#1 TATCTTAGGGCTACAGCTGACTCAAGACAACAAGATTGCCATCCAACTCAAACAGTGTTG 131 consensus_16010#2 -----------------TTTTTTTTTTTTTTTTTTTTGCCATCCAACTCAAACAGTGTTG 43 * * ************************* consensus_16010#0 TTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGC 300 consensus_16010#3 TTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATGAAAAGCTCAGAGGC 165 consensus_16010#1 TTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAAGCAGGATAAAAAGCTCAGAGGC 191 consensus_16010#2 TTGATTGGTGAGAAAATCTTGCATGAGAATAATGACAANCAGGATGAAAAGCTCANAGGC 103 ************************************** ****** ********* **** consensus_16010#0 GTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGA 360 consensus_16010#3 GTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGA 225 consensus_16010#1 GTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGA 251 consensus_16010#2 GTGCTAGTCATCCGAAAAGAAAAATTCTGTGAGGACAACAACAAACATGGGAGATCATGA 163 ************************************************************ consensus_16010#0 ACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCT 420 consensus_16010#3 ACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCT 285 consensus_16010#1 ACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCT 311 consensus_16010#2 ACTTGGTTTGTCGGCTTTTTCTCCTTATTTGTGAAGATCATTCATTTGAAGTAAAACCCT 223 ************************************************************ consensus_16010#0 GAGAGGCTACTCAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAA 480 consensus_16010#3 GAGAGGCTACTCAAATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAA 345 consensus_16010#1 GAGAGGCTACTCAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAA 371 consensus_16010#2 GAGAGGCTACTCAGATACGGGGCATGCACTCTCAAAATCTTGCTGCTCCTTACGACAGAA 283 ************* ********************************************** consensus_16010#0 GTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCA 540 consensus_16010#3 GTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCC-------- 397 consensus_16010#1 GTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGCATAGGCGTCCATCTCCTTGGGGCA 431 consensus_16010#2 GTCAAATTCGTTGGTGTAGTAATACATGCAGCCGGNATAGGNGTCCATCTCCTTGGGGNA 343 *********************************** ***** ********** consensus_16010#0 CTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTC 600 consensus_16010#3 ------------------------------------------------------------ consensus_16010#1 CTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGCTTGACCTGGCGGCCCTTCTC 491 consensus_16010#2 CTTCTGGTGAAGTTCTTTCAACAGGTCGAAGACGCAGCGNTTGGACCTGGNGGCCC---- 399 consensus_16010#0 GAGGCACTTCTGCGGGTTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGG 660 consensus_16010#3 ------------------------------------------------------------ consensus_16010#1 GAGGCACTTCTGCGGGTTGGGGTCCTTCTTCTTGCAGTTGAGGAAGGCCACGTTCTCCGG 551 consensus_16010#2 ------------------------------------------------------------ consensus_16010#0 CCTGCACCGCACGGCGATGTGCTTCGACGCCGCCATCAGCACCGACGAGGTCGGGATCGG 720 consensus_16010#3 ------------------------------------------------------------ consensus_16010#1 CCTGCACCGCACGGCGATGTGCTTCGACGCCGCCATCAGCACCGACGAGGTCGGGATCGG 611 consensus_16010#2 ------------------------------------------------------------ consensus_16010#0 ATCCCCCGATGCGTCCACCGGCGCGCTGCTCGCCGACATCCCTGCGTGCGGCGCGGCGGG 780 consensus_16010#3 ------------------------------------------------------------ consensus_16010#1 ATCCCCCGATGCGTCCACCGGCGCGCTGCTCGCCGACATCCCTGCGTGCGGCGCGGCGGG 671 consensus_16010#2 ------------------------------------------------------------ consensus_16010#0 CCTCGAGGGCTTCTCGCCTTGGAGATCTGAGGAAGTCGGAGATGGAGATGGAGAGGACTG 840 consensus_16010#3 ------------------------------------------------------------ consensus_16010#1 CCTCGAGGGCTTCTCGCCTTGGAGATCTGAGG---------------------------- 703 consensus_16010#2 ------------------------------------------------------------ consensus_16010#0 TGGA 844 consensus_16010#3 ---- consensus_16010#1 ---- consensus_16010#2 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||