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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence
[TCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGTGGCGCTGGCGCTTGCCGTGCTCATGTTCACGGCCACCGCGGTGGCCGGGCACCCGGCTCCGGCGAACAAGCACGGCCACACGCCGGCGCACCACCACCCGGCTGAAGAAGCACGCCCGCGCGCAAGCACGGCGGCCATGGCGGCCACACCAAGCCTCACCACCGCATGTAACCGGATGCCGACGCGCGCACGCATGCCGCAATCAGCAATGCCCTCTCGCCTTCATTCTTTTTCATTCTTCTTCTTGTTGTTTTGATTAGCGCCCTTACTTTATCATCATTTGGTTTAATTTGTACGCTTACCCTGAGTTGATTTGATCTTCTCCTTCTTCTACCTACGCGCATGTGTCATGTGCCATGAGTGAACTGAACCCCATCGGAATAAACCAGATGCTCCTCCACCTGCTCCTCATGCCCCCACCCACCTCCTCCCTTCCTCCGCCTGCCTTCCTCCCCCCTCCCCTCTCCCCCCCGACTCCCCCTCCGCGCGCGCCCCGGACCCCCCTCCCCCCCTTCAGGGCGCCCCGCTTACCCCGCCCCCCCTGCCCCCCCTTTCCCCCGCT]
[+] EMBL CA756289 [TCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGTGGCGCTGGCGCTTGCCGTGCTCATGTTCACGGCCACCGCGGTGGCCGGGCACCCGGCTCCGGCGAACAAGCACGGCCACACGCCGGCGCACCACCACCCGGCTGAAGAAGCACGCCCGCGCGCAAGCACGGCGGCCATGGCGGCCACACCAAGCCTCACCACCGCATGTAACCGGATGCCGACGCGCGCACGCATGCCGCAATCAGCAATGCCCTCTCGCCTTCATTCTTTTTCATTCTTCTTCTTGTTGTTTTGATTAGCGCCCTTACTTTATCATCATTTGGTTTAATTTGTACGCTTACCCTGAGTTGATTTGATCTTCTCCTTCTTCTACCTACGCGCATGTGTCATGTGCCATGAGTGAACTGAACCCCATCGGAATAAACCAGATGCTCCTCCACCTGCTCCTCATGCCCCCACCCACCTCCTCCCTTCCTCCGCCTGCCTTCCTCCCCCCTCCCCTCTCCCCCCCGACTCCCCCTCCGCGCGCGCCCCGGACCCCCCTCCCCCCCTTCAGGGCGCCCCGCTTACCCCGCCCCCCCTGCCCCCCCTTTCCCCCGCT]
consensusID : consensus_16117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 25 consensus length = 525 fasta sequence
[AGAGAGAGAGCAAGAAGAGGAGGA-GGA-GGAAGAA-GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGT-GGCGCTGGCGCTTGCCGTGCTCATGTT-CACGGCCACCGCGGTGGC-CGGGC-A-CCCGGC-T-CCGGCG-AAG-AAGCACGGCCACACGCCGGCGCACC-ACCACCCGGCGAAGAAGCACGGGGCGCG-CAAGCAC-GGCGGCCATGGCGGCCACACCAAGCCTCACC-ACCGC-ATGT-AA--CCG-G--ATGCCG-ACGCGC-GCACGCA-TG-CAGCAATCA-GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC-TTG-TTGTTTTGATTAGCGCCCTTAC-TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGA-TTTGATCTTCTCCTTCTTCTACCTACGCGTATGTGTCAT-GTGGGATGAGTNAAATGAAATCCATGGNATAAAATCAGATGCTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK070204 [AGAGAGAGAGCAAGAAGAGGAGGA GGA GGAAGAA GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGT GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTGGC CGGGC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAAGCAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGA TTTGATCTTCTCCTTCTTCTACCTACGCGTATGTGTCAT GTG ]
[+] EMBL OSC047 [ AGAGCAAGAAGAGGAGGA GGA GGAAGAA GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGT GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTGGC GGNGC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCNGCGAAGAAGCACGGGGCGCG CAAG AC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TN CAGCAATCA GCAATGCCATCTCGGCTTCATTCTTTTTCATTCTNCTTC TTG TTGTTTTGATTAGCGCCCTTACTTTTATGATCATTT ]
[+] EMBL OSS11359A [ ccGCAAGAAGAGGAGGA GGA GGAAGAA GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGT GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTG CGGNCTANCCCGGCTT CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAA NACGGGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G TTGCCG ACGNGC GGACGCATTG CAGCAATCA GCAATGCCATNTCGNCTTCATTCTTTTTCATTCTTCTTCTTTGTTTGTTTTGATTAGCGGCCTTAA TTTATGNCCATTTGGTT ]
[+] EMBL OSS16502A [ AGAAGAGGAGGA GGA GGAAGAA GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGT GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTGGCGCGGCA A CCCGGN T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG NAA NAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGNA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGNTTACCATGAGTTGA TTTGATCTTCTCCTTCTTCTACCTACGGGTATGTGTCAT GTGGGATGAGTN ]
[+] EMBL OSS13188A [ GAAGAGGAGGA GGA GGAAGAA GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGN GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTTGC GNGNC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAA CAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACG A TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCG CCTTAC TTTATGATCATTTNGTTTAATTTGTAaaaa ]
[+] EMBL OSS15456A [ GAAGAGGAGGA GGA GGAAGAA GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGT GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTGGC TNGNC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAA NAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CC ]
[+] EMBL OSS13110A [ GAAGAGGAGGA GGA GGAAGAA GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGT GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTGG CNGGC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAA NAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACG A TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCG CCTTAC TTTATGATCATTTGGTTTAATTTGTAaaaaa ]
[+] EMBL OSS15632A [ AAGAGGAGGA GGA GGAAGAA GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGT GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTGG CGGNC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAA NAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGNTTACCATGAGTTGA TTTGATCTTCTCCTTCT ]
[+] EMBL OSS15854A [ AAGAGGAGGA GGA GGAAGAA GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGT GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTG CGGNC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAA NAC GGCGGCCATNGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACG A TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTNTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACG TTACCATGAGTTGATTTTNATCTTCTCCTTCTTCTAACTACGGGTA ]
[+] EMBL AU065989 [ GAGGAGGA GGA GGAAGAA GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGT GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTGGC CGGGC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAAGCAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTT ]
[+] EMBL AU095873 [ GGAGGACGGACGGAAGAACGAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGT GNNG TGGCGCTTGCCGTGCTCATGTT CNAG CACCGCGGTGGC CGGGCAA CCCGGC TNCCGGCGTAAGNAAGCACGGCCACACGCCGGCGCACCTACCACCCGGCGAAGAAGCACGGGGCGCGNCAAGCAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAaaaaaaa ]
[+] EMBL AU031336 [ GA GGA GGAAGAA GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGTNGGCG TGGCGCTTGCCGTGCTCATGTTCCACGNCCACCGCGGTGGC CGGGC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAAGCAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGA TTTGATCTTCTCCTTCTTCTACCTACGCGTATGTGTCAT GTG ]
[+] EMBL CB683399 [ A GGA CGAAGAA GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGT GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTGGC CGGGC A CCCGGC T CCGGCG AAT AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAAGCAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAAT ]
[+] EMBL AU091966 [ A GGA GGAAGAA GAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCNGGT GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTGGC CGGGC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAA CAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGA TTTGATCTTCTCCTTCTTCTACCTACGCGTATGTGTCAT GTG ]
[+] EMBL CA754589 [ AGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGT GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTGGC CGGGC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAAGCAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGA TTTGATCTTCTCCTTCTTCTACCTACGCGTATGTGTCAT GTG ]
[+] EMBL CA755217 [ TCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGT GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTGGC CGGGC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAAGCAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGA TTTGATCTTCTCCTTCTTCTACCTACGCGTATGTGTCAT GTG ]
[+] EMBL CA754677 [ TGGCGGGATTGTTGAAGAGGTTGCTGGT GGCGCTGGCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTGGC CGGGC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAAGCAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGA TTTGATCTTCTCCTTCTTCTACCTACGCGTATGTGTCAT GTG ]
[+] EMBL AU058250 [ AGGTTGCTGGT GCCCTGGCGCTTGCCGTGCTCATGTTCCACGGCNACCNCGGTGGC CGGGC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCNCGGGGCGCG CAAGCAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGA TTTGATCTTCTCCTTCTTCTNCCTACGCGTATGTGTCAT GTGGGATGAGTGAAATGAAATCCATGGNATAAAATCAGATGCTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA755983 [ GCGCTTGCCGTGCTCATGTT CACGGCCACCGCGGTGGC CGGGC A CCCGGC T CCGGCG AAG AAGCACGGCCACACGCCGGCGCACC ACCACCCGGCGAAGAAGCACGGGGCGCG CAAGCAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGA TTTGATCTTCTCCTTCTTCTACCTACGCGTATGTGTCAT GTG ]
[+] EMBL AU198084 [ cCCCGGCGAAGAAGCACGGGGCGCG CAAGCAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGA TTTGATCTTCTCCTTCTTCTACCTACGCGTATGTGTCAT GTG ]
[+] EMBL AU198121 [ CGGCGAAGAAGCACGGGGCGCG CAAGCAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGA TTTGATCTTCTCCTTCTTCTACCTACGCGTATGTGTCAT GTG ]
[-] EMBL CB683788 [ AGCACGGGGCGCG CAAGCAC GGCGGCCATGGCGGCCACACCAAGCCTCACC ACCGC ATGT AA CCG G ATGCCG ACGCGC GCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTTC TAAGTGATCATTTGGTTTAA ]
[+] EMBL AU091484 [ GGC GCCNCACCAAAGCTCACCAACCGC ATGTAAA CCGNG ATGCCG ACGCGC GCACGCA TG CAGCAATCACGCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGA TTTGATCTTCTCCTTCTTCTACCTACGCGTATGTGTCATNGTG ]
[+] EMBL AU091482 [ ACC CGGCAAGGT AAACCCG GGAATGCCGNACGCGCGGCACGCA TG CAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGA TTTGATCTTCTCCTTCTTCTACCTACGCGTATGTGTCAT GTG ]
[+] EMBL AU091311 [ CG G ATGCCG ACGCGC NCACGCA TGNCAGCAATCA GCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTC TTG TTGTTTTGATTAGCGCCCTTAC TTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGA TTTGATCTTCTCCTTCTTCTACCTACGCGTATGTGTCAT GTG ]
consensusID : consensus_16117#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence
[AGGAGGAAGAAGAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGTGGCGCTGGTTTNCCGTNCTCATGTTCACGGCCACCGCGGCGCGAACTCCNGGCTNCCGGCGCAAGAAGCACGGCCACACNCCGCGCACCACCACCCGGCGAAGAAGCACGGGGCGCGCAAACGGCGNCCATGGGGCACNACCAAGCCTCACCACCGCATGTAACCGGATGCCGACGCGCGCACGATTGCAGCAATCAGCAATNCCATCTCGNCTTCATTCTTTTTCATTCTTCTTCTTGTTGTTTTGATTAGCGCCCTTACTTTTATGATCATTTGGGTTTAATTTGTACGGTTACCATGAGTTGATTTGATCTTCTTCTTCTTCTACCTACGGGTATGTGTCATGTGGGATGAGTTAAATGAAATCCATNGGATTAAATCAGAT]
[+] EMBL C27804 [AGGAGGAAGAAGAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGTGGCGCTGGTTTNCCGTNCTCATGTTCACGGCCACCGCGGCGCGAACTCCNGGCTNCCGGCGCAAGAAGCACGGCCACACNCCGCGCACCACCACCCGGCGAAGAAGCACGGGGCGCGCAAACGGCGNCCATGGGGCACNACCAAGCCTCACCACCGCATGTAACCGGATGCCGACGCGCGCACGATTGCAGCAATCAGCAATNCCATCTCGNCTTCATTCTTTTTCATTCTTCTTCTTGTTGTTTTGATTAGCGCCCTTACTTTTATGATCATTTGGGTTTAATTTGTACGGTTACCATGAGTTGATTTGATCTTCTTCTTCTTCTACCTACGGGTATGTGTCATGTGGGATGAGTTAAATGAAATCCATNGGATTAAATCAGAT]
consensusID : consensus_16117#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence
[CAAGAAGAGGAGGAGGAGGAAGAAGAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGTGGCGCTGGCGCTTGCCGTGCTCATGTTCACGGCCACCGCGGTNCGCACCCGGCTCCGGCGAAGAAGCACGGCCACACGCCGGCGCACCACCACCCGGCGAAGAAGCACGGGGCGCGCAACACGGCGGCCATGGCGGCCACACCAAGCCTCACCACCGCATGTAACCGGATGCCGACGCGCGCACGCATGCAGCAATCAGCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTCTTGTTGTTTTGATTAGCGCCCTTACTTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGATTTGATCTTCTCCTTCTTCTACCTAAAAAANAGAN]
[+] EMBL AU091481 [CAAGAAGAGGAGGAGGAGGAAGAAGAAGACATACTGTCCATCCATGGCGGGATTGTTGAAGAGGTTGCTGGTGGCGCTGGCGCTTGCCGTGCTCATGTTCACGGCCACCGCGGTNCGCACCCGGCTCCGGCGAAGAAGCACGGCCACACGCCGGCGCACCACCACCCGGCGAAGAAGCACGGGGCGCGCAACACGGCGGCCATGGCGGCCACACCAAGCCTCACCACCGCATGTAACCGGATGCCGACGCGCGCACGCATGCAGCAATCAGCAATGCCATCTCGCCTTCATTCTTTTTCATTCTTCTTCTTGTTGTTTTGATTAGCGCCCTTACTTTATGATCATTTGGTTTAATTTGTACGCTTACCATGAGTTGATTTGATCTTCTCCTTCTTCTACCTAAAAAANAGAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16117#1 AGAGAGAGAGCAAGAAGAGGAGGAGGAGGAAGAAGAAGACATACTGTCCATCCATGGCGG 60
consensus_16117#3 ----------CAAGAAGAGGAGGAGGAGGAAGAAGAAGACATACTGTCCATCCATGGCGG 50
consensus_16117#2 -----------------------AGGAGGAAGAAGAAGACATACTGTCCATCCATGGCGG 37
consensus_16117#0 ----------------------------------------------TCCATCCATGGCGG 14
**************
consensus_16117#1 GATTGTTGAAGAGGTTGCTGGTGGCGCTGGCGCTTGCCGTGCTCATGTTCACGGCCACCG 120
consensus_16117#3 GATTGTTGAAGAGGTTGCTGGTGGCGCTGGCGCTTGCCGTGCTCATGTTCACGGCCACCG 110
consensus_16117#2 GATTGTTGAAGAGGTTGCTGGTGGCGCTGGT--TTNCCGTNCTCATGTTCACGGCCACCG 95
consensus_16117#0 GATTGTTGAAGAGGTTGCTGGTGGCGCTGGCGCTTGCCGTGCTCATGTTCACGGCCACCG 74
****************************** ** **** *******************
consensus_16117#1 CGGTGGCCGGGCACCCGGCTCC-GGCG-AAGAAGCACGGCCACACGCCGGCGCACCACCA 178
consensus_16117#3 CGGTNC----GCACCCGGCTCC-GGCG-AAGAAGCACGGCCACACGCCGGCGCACCACCA 164
consensus_16117#2 CGGCGC--GAACTCCNGGCTNCCGGCGCAAGAAGCACGGCCACACNCCG-CGCACCACCA 152
consensus_16117#0 CGGTGGCCGGGCACCCGGCTCC-GGCG-AACAAGCACGGCCACACGCCGGCGCACCACCA 132
*** * ** **** * **** ** ************** *** **********
consensus_16117#1 CCCGGC-GAAGAAGCACGGG-GCGCGCAAGCACGGCGGCCATGGCGGCCACACCAAGCCT 236
consensus_16117#3 CCCGGC-GAAGAAGCACGGG-GCGCGCAA-CACGGCGGCCATGGCGGCCACACCAAGCCT 221
consensus_16117#2 CCCGGC-GAAGAAGCACGGG-GCGCGCAA--ACGGCGNCCATGG-GGCACNACCAAGCCT 207
consensus_16117#0 CCCGGCTGAAGAAGCACGCCCGCGCGCAAGCACGGCGGCCATGGCGGCCACACCAAGCCT 192
****** *********** ******** ****** ****** *** *********
consensus_16117#1 CACCACCGCATGTAACCGGATGCCGACGCGCGCACGCATGCAGCAATCAGCAATGCCATC 296
consensus_16117#3 CACCACCGCATGTAACCGGATGCCGACGCGCGCACGCATGCAGCAATCAGCAATGCCATC 281
consensus_16117#2 CACCACCGCATGTAACCGGATGCCGACGCGCGCACGATTGCAGCAATCAGCAATNCCATC 267
consensus_16117#0 CACCACCGCATGTAACCGGATGCCGACGCGCGCACGCATGCCGCAATCAGCAATGCCCTC 252
************************************ *** ************ ** **
consensus_16117#1 TCGCCTTCATTCTTTTTCATTCTTCTTCTTGTTGTTTTGATTAGCGCCCTTACTTT-ATG 355
consensus_16117#3 TCGCCTTCATTCTTTTTCATTCTTCTTCTTGTTGTTTTGATTAGCGCCCTTACTTT-ATG 340
consensus_16117#2 TCGNCTTCATTCTTTTTCATTCTTCTTCTTGTTGTTTTGATTAGCGCCCTTACTTTTATG 327
consensus_16117#0 TCGCCTTCATTCTTTTTCATTCTTCTTCTTGTTGTTTTGATTAGCGCCCTTACTTT-ATC 311
*** **************************************************** **
consensus_16117#1 ATCATTTGG-TTTAATTTGTACGCTTACCATGAGTTGATTTGATCTTCTCCTTCTTCTAC 414
consensus_16117#3 ATCATTTGG-TTTAATTTGTACGCTTACCATGAGTTGATTTGATCTTCTCCTTCTTCTAC 399
consensus_16117#2 ATCATTTGGGTTTAATTTGTACGGTTACCATGAGTTGATTTGATCTTCTTCTTCTTCTAC 387
consensus_16117#0 ATCATTTGG-TTTAATTTGTACGCTTACCCTGAGTTGATTTGATCTTCTCCTTCTTCTAC 370
********* ************* ***** ******************* **********
consensus_16117#1 CTACGCGTATGTGTCATGTGGGATGAGTNAAATGAAATCCATGGNATAAAATCAGATGCT 474
consensus_16117#3 CTAAAAAANAGAN----------------------------------------------- 412
consensus_16117#2 CTACGGGTATGTGTCATGTGGGATGAGTTAAATGAAATCCATNGGATTAAATCAGAT--- 444
consensus_16117#0 CTACGCGCATGTGTCATGTGCCATGAGTGAACTGAACCCCATCGGAATAAACCAGATGCT 430
*** *
consensus_16117#1 CCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------- 525
consensus_16117#3 ------------------------------------------------------------
consensus_16117#2 ------------------------------------------------------------
consensus_16117#0 CCTCCACCTGCTCCTCATGCCCCCACCCACCTCCTCCCTTCCTCCGCCTGCCTTCCTCCC 490
consensus_16117#1 ------------------------------------------------------------
consensus_16117#3 ------------------------------------------------------------
consensus_16117#2 ------------------------------------------------------------
consensus_16117#0 CCCTCCCCTCTCCCCCCCGACTCCCCCTCCGCGCGCGCCCCGGACCCCCCTCCCCCCCTT 550
consensus_16117#1 ------------------------------------------------
consensus_16117#3 ------------------------------------------------
consensus_16117#2 ------------------------------------------------
consensus_16117#0 CAGGGCGCCCCGCTTACCCCGCCCCCCCTGCCCCCCCTTTCCCCCGCT 598
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||