These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2066 fasta sequence [GCTTTCCGCATTGCGGCGCGGCCTCAGCGGCGGCCGGCGGCGTGGGCTCCGGCGGCTCGAGCTCCGGCAGCGCCGGCGGCGGACGGCTTCCTTTTGGTCTTGCGCGCGTAGGAAATCGAAGCCTTCGTTTGACGATTCCTTCCCAAAGCTAAGCCCCTACCAAATGGAGAAGTTCCTCGTGGCGGCGCCTCCACCTTCCGGCGATGCTCCGGCGGCACCGGTTCCTCCGAGACGGCACCGGTGGAGCCGCGTCGCCGCCGAGCTGGACGGCCGCATCGACGCTAGGTTTCGGCACCGGGAGTCCGTTCGCCTGCGCGATTCGTTCTCCGAGATAAGGACCTTCAGTCACAATTACTACATGGAAGGCCAGGAGCGATGTACAACATATATGAATCGAGTTGTTAACGATTCAGTCCTGGGATTTCAAGCAGTAAGAGAGGGGATTTCAGCAATGGAATTTGATAAAAAGGGAATATACCTTGCATCAGTTACAGCCTCGGGATGTTTAACCGTGCATGATTTTGAGACCTTATACTGCTCCACATATGGTCCATCACGGGGTTTGCCAGATGAATCATCAAACTATTTGCTACATATATCAAACTCAATGCCCCTATGTGCTGTCCGATGGAATCCAGCAAATCAAGATGAGATAGTTTGTGTATCTAGACAAACTGACATGGTTCTCCTGTTTGATATTGGCTGTGTCTCGTCCACGCCAACTGAAATTTTACGGAAAGGAAGATCCAGATATCCTGTGCTCTCTGAATTCCGCAAAGGTTTGACTGATGTAGCTTTTTCTTCAGATGATAAGTCATGGTTATTTGCATCTGGCCTTGATGGAGCGGTCTTCATGTGGGACATGCGGCTAAGTAAAAAACACTGTCTTGAGCTCATAGGACATCCAGAATCTCAATTTAGCAGTGTCAAGCTAAATATAGATAACCGGACCGTGTTTGCTGCAACTAAAGAGGGCACCGTTCATGCCTGGGATCTCCGTGGAGGGAGGGCATCAGCTGCTTTTCAAAGCCATAATGAGGTTCAACAATTATCATCAGTGAAGATATCAACTTTGTTGGGCAAAATTCCATCGCTAAAGGACCAAACGAACATTGTGTCGAGTGAAATTCTTTCAATAGACTTCAACCCTAGTTGCTCATATCAGTTAGCCTTCCATCTTGACAATGGCTGGTCTGGAGCCTTGAACATTAACACCCTCAGTGTGAGTCACCTGCACTGCCCTCCTCCTGATTGGTTGGAGCACATGAACTTCATGTGGCAAAAGCTACATAGAAAACCGACCTGGTTGCCGACATCTTCAATTTATGCAGTTGGATCTGCCTCCAATACTGTTGGCATGCATCTACTGGATTTTCATCCAGATACAAGTTCAGCATGCCATGTCGACTACAATGAGGAAATAAGAGGCTCCGATGAAAAGAAACCTGCAGCAAACAAGTTTATTCCTTCATCTCAGAGAGTTGTTTCCTGTGCAGCACATCCCTTCTGTCATACTATACTTGCCGGTACTCAGTTTTCATCTTTGCTCGTGTTATCGCAAAAGCAAGAGTCTATCAAAAACTCGGAGTAGCGGTGTCATGGAACAATCTTGATTTGCCTCCAAGACAATATCTCCAAATGCAGTCACAGTGCTCTACATTAGCTCGTGGGCCGTCCTGCATCGGAGAATGATCAGCCGCATGGGAGCACAATCTATTGGTCCCACCACAGAGGCTCCCAACCTGATCGACCGGTCAAAAAGAACTAAATCTCTTGGCGTTACATGATTCGATCTTCTGCCAGTGCATTGCCTCCAAGATGGGCGACAGATTTCTGTGTTGCAACCGACCATGTATGTACTTTCATGGCATGCTCCTAGGGGCTCTGAAGGTTCGCTTACCTGTACATGATTTCCCCCGTTCCCTGAACTCCCTATCTCTGTAGATCGTACATAAGTTGTGTTTCCCAGTTTCTCGCAATGTCGGTGTATCTCCTGGATGTAATACTGTATAATGAACTGCTTCATCCGTTCCAAAATATAACATACTGGTACTAGATTATACATA] [+] EMBL AK102016 [GCTTTCCGCATTGCGGCGCGGCCTCAGCGGCGGCCGGCGGCGTGGGCTCCGGCGGCTCGAGCTCCGGCAGCGCCGGCGGCGGACGGCTTCCTTTTGGTCTTGCGCGCGTAGGAAATCGAAGCCTTCGTTTGACGATTCCTTCCCAAAGCTAAGCCCCTACCAAATGGAGAAGTTCCTCGTGGCGGCGCCTCCACCTTCCGGCGATGCTCCGGCGGCACCGGTTCCTCCGAGACGGCACCGGTGGAGCCGCGTCGCCGCCGAGCTGGACGGCCGCATCGACGCTAGGTTTCGGCACCGGGAGTCCGTTCGCCTGCGCGATTCGTTCTCCGAGATAAGGACCTTCAGTCACAATTACTACATGGAAGGCCAGGAGCGATGTACAACATATATGAATCGAGTTGTTAACGATTCAGTCCTGGGATTTCAAGCAGTAAGAGAGGGGATTTCAGCAATGGAATTTGATAAAAAGGGAATATACCTTGCATCAGTTACAGCCTCGGGATGTTTAACCGTGCATGATTTTGAGACCTTATACTGCTCCACATATGGTCCATCACGGGGTTTGCCAGATGAATCATCAAACTATTTGCTACATATATCAAACTCAATGCCCCTATGTGCTGTCCGATGGAATCCAGCAAATCAAGATGAGATAGTTTGTGTATCTAGACAAACTGACATGGTTCTCCTGTTTGATATTGGCTGTGTCTCGTCCACGCCAACTGAAATTTTACGGAAAGGAAGATCCAGATATCCTGTGCTCTCTGAATTCCGCAAAGGTTTGACTGATGTAGCTTTTTCTTCAGATGATAAGTCATGGTTATTTGCATCTGGCCTTGATGGAGCGGTCTTCATGTGGGACATGCGGCTAAGTAAAAAACACTGTCTTGAGCTCATAGGACATCCAGAATCTCAATTTAGCAGTGTCAAGCTAAATATAGATAACCGGACCGTGTTTGCTGCAACTAAAGAGGGCACCGTTCATGCCTGGGATCTCCGTGGAGGGAGGGCATCAGCTGCTTTTCAAAGCCATAATGAGGTTCAACAATTATCATCAGTGAAGATATCAACTTTGTTGGGCAAAATTCCATCGCTAAAGGACCAAACGAACATTGTGTCGAGTGAAATTCTTTCAATAGACTTCAACCCTAGTTGCTCATATCAGTTAGCCTTCCATCTTGACAATGGCTGGTCTGGAGCCTTGAACATTAACACCCTCAGTGTGAGTCACCTGCACTGCCCTCCTCCTGATTGGTTGGAGCACATGAACTTCATGTGGCAAAAGCTACATAGAAAACCGACCTGGTTGCCGACATCTTCAATTTATGCAGTTGGATCTGCCTCCAATACTGTTGGCATGCATCTACTGGATTTTCATCCAGATACAAGTTCAGCATGCCATGTCGACTACAATGAGGAAATAAGAGGCTCCGATGAAAAGAAACCTGCAGCAAACAAGTTTATTCCTTCATCTCAGAGAGTTGTTTCCTGTGCAGCACATCCCTTCTGTCATACTATACTTGCCGGTACTCAGTTTTCATCTTTGCTCGTGTTATCGCAAAAGCAAGAGTCTATCAAAAACTCGGAGTAGCGGTGTCATGGAACAATCTTGATTTGCCTCCAAGACAATATCTCCAAATGCAGTCACAGTGCTCTACATTAGCTCGTGGGCCGTCCTGCATCGGAGAATGATCAGCCGCATGGGAGCACAATCTATTGGTCCCACCACAGAGGCTCCCAACCTGATCGACCGGTCAAAAAGAACTAAATCTCTTGGCGTTACATGATTCGATCTTCTGCCAGTGCATTGCCTCCAAGATGGGCGACAGATTTCTGTGTTGCAACCGACCATGTATGTACTTTCATGGCATGCTCCTAGGGGCTCTGAAGGTTCGCTTACCTGTACATGATTTCCCCCGTTCCCTGAACTCCCTATCTCTGTAGATCGTACATAAGTTGTGTTTCCCAGTTTCTCGCAATGTCGGTGTATCTCCTGGATGTAATACTGTATAATGAACTGCTTCATCCGTTCCAAAATATAACATACTGGTACTAGATTATACATA] consensusID : consensus_1614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 980 fasta sequence [GCATTGCGGCGCGGCCTCAGCGGCGGCCGGCGGCGTGGGCTCCGGCGGCTCGAGCTCCGGCAGCGCCGGCGGCGGACGGCTTCCTTTTGGTCTTGCGCGCGAAATCGAAGCCTTCGTTTGACGATTCCTTCCCAAAGCTAAGCCCCTACCAAATGGAGAAGTTCCTCGTGGCGGCGCCTCCACCTTCCGGCGATGCTCCGGCGGCACCGGTTCCTCCGAGACGGCACCGGTGGAGCCGCGTCGCCGCCGAGCTGGACGGCCGCATCGACGCTAGGTTTCGGCACCGGGAGTCCGTTCGCCTGCGCGATTCGTTCTCCGAGGTGACAGAAATCTCGGAAAAGAGCATTTGCTTTGTTTCCGTGTTGGTTATTACGAAGTTGTTTTCACTACTGGGATTACTGCATATGAGTTAGACACTGGAACTGGAATTCTCTAGAGCGGCTAACGACATATTTACTTTTTTGTTTCTTTTTAGTAATGCTAATCATAGGTTGTAGATTCCAATAGCAAAGCTGCTCCCTTATGTTTCTTCTGTTGCAATAAGCTGGTAGAAGTGCTAGAACTTGCGAAGTAGCACTTATAGGATGTCATTGGTCGCCCTGATCTCTTTCCGGTTGCTCAATGTTCTTTCCTGAGCTGGTGGTCAGGCATCAGGAAAGGGGTCCCTAACAGCTTAGGCGCGGGTTCGATACCGTCGTCGTGCTCGCTGCCTAGTCCATCTGGAAGGAAAGGAACAACAGGGTGTTCTATCAGCAGCAGCACTCGTGGCCGGACGTAGCTAGGGCAGCGGCAGAGGAGGCTGCCTTGTGGAGATCGGCAGGTCTGCTCCCGGAGTTGACAATCAGCATTAGGGTCGCAAAATTTATGCCGGGACATATCACCTTTGTAACCTTCTCTTTGTTTCTTTTTTCTGTCCGGGTTGGTTTGTAAGTTGTTGACTTTATTCCCTAATCGTAATACAAAGATGCGCAAATATTTTG] [+] EMBL AK060151 [GCATTGCGGCGCGGCCTCAGCGGCGGCCGGCGGCGTGGGCTCCGGCGGCTCGAGCTCCGGCAGCGCCGGCGGCGGACGGCTTCCTTTTGGTCTTGCGCGCGAAATCGAAGCCTTCGTTTGACGATTCCTTCCCAAAGCTAAGCCCCTACCAAATGGAGAAGTTCCTCGTGGCGGCGCCTCCACCTTCCGGCGATGCTCCGGCGGCACCGGTTCCTCCGAGACGGCACCGGTGGAGCCGCGTCGCCGCCGAGCTGGACGGCCGCATCGACGCTAGGTTTCGGCACCGGGAGTCCGTTCGCCTGCGCGATTCGTTCTCCGAGGTGACAGAAATCTCGGAAAAGAGCATTTGCTTTGTTTCCGTGTTGGTTATTACGAAGTTGTTTTCACTACTGGGATTACTGCATATGAGTTAGACACTGGAACTGGAATTCTCTAGAGCGGCTAACGACATATTTACTTTTTTGTTTCTTTTTAGTAATGCTAATCATAGGTTGTAGATTCCAATAGCAAAGCTGCTCCCTTATGTTTCTTCTGTTGCAATAAGCTGGTAGAAGTGCTAGAACTTGCGAAGTAGCACTTATAGGATGTCATTGGTCGCCCTGATCTCTTTCCGGTTGCTCAATGTTCTTTCCTGAGCTGGTGGTCAGGCATCAGGAAAGGGGTCCCTAACAGCTTAGGCGCGGGTTCGATACCGTCGTCGTGCTCGCTGCCTAGTCCATCTGGAAGGAAAGGAACAACAGGGTGTTCTATCAGCAGCAGCACTCGTGGCCGGACGTAGCTAGGGCAGCGGCAGAGGAGGCTGCCTTGTGGAGATCGGCAGGTCTGCTCCCGGAGTTGACAATCAGCATTAGGGTCGCAAAATTTATGCCGGGACATATCACCTTTGTAACCTTCTCTTTGTTTCTTTTTTCTGTCCGGGTTGGTTTGTAAGTTGTTGACTTTATTCCCTAATCGTAATACAAAGATGCGCAAATATTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1614#0 GCTTTCCGCATTGCGGCGCGGCCTCAGCGGCGGCCGGCGGCGTGGGCTCCGGCGGCTCGA 60 consensus_1614#1 -------GCATTGCGGCGCGGCCTCAGCGGCGGCCGGCGGCGTGGGCTCCGGCGGCTCGA 53 ***************************************************** consensus_1614#0 GCTCCGGCAGCGCCGGCGGCGGACGGCTTCCTTTTGGTCTTGCGCGCGTAGGAAATCGAA 120 consensus_1614#1 GCTCCGGCAGCGCCGGCGGCGGACGGCTTCCTTTTGGTCTTGCGCGCG----AAATCGAA 109 ************************************************ ******** consensus_1614#0 GCCTTCGTTTGACGATTCCTTCCCAAAGCTAAGCCCCTACCAAATGGAGAAGTTCCTCGT 180 consensus_1614#1 GCCTTCGTTTGACGATTCCTTCCCAAAGCTAAGCCCCTACCAAATGGAGAAGTTCCTCGT 169 ************************************************************ consensus_1614#0 GGCGGCGCCTCCACCTTCCGGCGATGCTCCGGCGGCACCGGTTCCTCCGAGACGGCACCG 240 consensus_1614#1 GGCGGCGCCTCCACCTTCCGGCGATGCTCCGGCGGCACCGGTTCCTCCGAGACGGCACCG 229 ************************************************************ consensus_1614#0 GTGGAGCCGCGTCGCCGCCGAGCTGGACGGCCGCATCGACGCTAGGTTTCGGCACCGGGA 300 consensus_1614#1 GTGGAGCCGCGTCGCCGCCGAGCTGGACGGCCGCATCGACGCTAGGTTTCGGCACCGGGA 289 ************************************************************ consensus_1614#0 GTCCGTTCGCCTGCGCGATTCGTTCTCCGAGATAAGGACCTTCAGTCACAATTACTACAT 360 consensus_1614#1 GTCCGTTCGCCTGCGCGATTCGTTCTCCGAGGTGA-----------CAGAAAT----CTC 334 ******************************* * * ** ** * * consensus_1614#0 GGAAGGCCAGGAGCGATGTACAACATATATGAATCGAGTTGTTAACGATTCAGTCCTGGG 420 consensus_1614#1 GGAA----AAGAGC-ATTTGCTTTGTTTCCGTGTTG-GTTATTACGAAGTTGTTTTC--- 385 **** * **** ** * * * * * * * *** *** * * * consensus_1614#0 ATTTCAAGCAGTAAGAGAGGGGATTTCAGCAATGGAATTTGATAAAAAGGGAATATACCT 480 consensus_1614#1 ACTACTGGGATTACTGCATATGAGTTAGACACTGGAACTGGA------------ATTCTC 433 * * * * * ** * ** ** ** ***** * ** ** * consensus_1614#0 TGCATCAGTTACAGCCTCGGGATGTTTAACCGTGCATGATTTTGAGACCTTATACTGCTC 540 consensus_1614#1 TAGAGCGGCTAA-----CGACATATTTACTT--------TTTTGTTTCTTTTTAGTAAT- 479 * * * * ** ** ** **** ***** * ** ** * * consensus_1614#0 CACATATGGTCCATCACGGGGTTTGCCAGATGAATCATCAAACTATTTGCTACATATATC 600 consensus_1614#1 --------GCTAATCATAGG--TTGTAGATTCCAATAGCAAAGCTGCTCCCTTATGTTTC 529 * **** ** *** * * * **** * * ** * ** consensus_1614#0 AAACTCAATGCCCCTATGTGCTGTCCGATGGAATCCAGCAAATCAAGATGAGATAGTTTG 660 consensus_1614#1 ---TTC--TGTTGCAATAAGCTG---GTAGAAGTGCTAGAACTTGCGAAGTAGCACTTAT 581 ** ** * ** **** * * * * * ** * ** * * ** consensus_1614#0 TGTATCTAGACAAACTGACATGGTTCTCCTGTTTGATATTGGCTGTGTCTCGTCCACGCC 720 consensus_1614#1 AGGATGTC-ATTGGTCGCCCTGAT-CTCTTTCCGGTTGCTCAATGT-TCTTTCCTGAGCT 638 * ** * * * * ** * *** * * * * *** *** * ** consensus_1614#0 AACTGAAATTTTACGGAAAGGAAGATCCAGATATCCTGTGCTCTCTGAATTCCGCAAAGG 780 consensus_1614#1 GGTGGTCAGGCATCAGGAAAGGGGTCCCTAACAGCTTAGGCGC---GGGTTCGATACCGT 695 * * * * ** * * ** * * * * ** * * *** * * consensus_1614#0 TTTGACTGATGTAGCTTTTTCTTCAGATGATAAGTCATGGTTATTTGCATCTGGCCTTGA 840 consensus_1614#1 CGTCGTGCTCGCTGCCTAGTC--CATCTGGAAGGAAAGGAACAACAGGGTGTTCTATCAG 753 * * ** * ** ** ** * * * * * * * * * consensus_1614#0 TGGAGCGGTCTTCATGTGGGACATGCGGCTAAGTAAAAAACACTGTCTTGAGCTCATAGG 900 consensus_1614#1 C--AGCAGCACTCGTG-GCCGGACGTAGCTAGGGCAGCGGCAGAGGAGGCTGCCTTGTGG 810 *** * ** ** * * * **** * * ** * ** ** consensus_1614#0 ACATCCAGAATCTCAATTTAGCAGTGTCAAGCTAAATATAGATAACCGGACCGTGTTTGC 960 consensus_1614#1 AGATCGGCAGGTCTGCTCCCG-------GAGTTGACAATCAGCATTAGGGTCGCAAAATT 863 * *** * * * ** * * ** * ** ** consensus_1614#0 TGCAACTAAAGAGGGCACCGTTCATGCCTGGGATCTCCGTGGAGGGAGGGCATCAGCTGC 1020 consensus_1614#1 TATGCCGGGACATATCACCTTTGTAACCTTCTCTTTGTTTCTTTTTTCTGTCCGGGTTGG 923 * * * * **** ** *** * * * * * ** consensus_1614#0 TTTTCAAAGCCATAATGAGGTTCAACAATTATCATCAGTGAAGATAT-CAACTTTGTTGG 1079 consensus_1614#1 TTTGTAAGTTGTTGACTTTATTCCCTAATCGTAAT--ACAAAGATGCGCAAATATTTTG- 980 *** ** * * *** *** * ** ***** *** * * *** consensus_1614#0 GCAAAATTCCATCGCTAAAGGACCAAACGAACATTGTGTCGAGTGAAATTCTTTCAATAG 1139 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 ACTTCAACCCTAGTTGCTCATATCAGTTAGCCTTCCATCTTGACAATGGCTGGTCTGGAG 1199 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 CCTTGAACATTAACACCCTCAGTGTGAGTCACCTGCACTGCCCTCCTCCTGATTGGTTGG 1259 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 AGCACATGAACTTCATGTGGCAAAAGCTACATAGAAAACCGACCTGGTTGCCGACATCTT 1319 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 CAATTTATGCAGTTGGATCTGCCTCCAATACTGTTGGCATGCATCTACTGGATTTTCATC 1379 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 CAGATACAAGTTCAGCATGCCATGTCGACTACAATGAGGAAATAAGAGGCTCCGATGAAA 1439 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 AGAAACCTGCAGCAAACAAGTTTATTCCTTCATCTCAGAGAGTTGTTTCCTGTGCAGCAC 1499 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 ATCCCTTCTGTCATACTATACTTGCCGGTACTCAGTTTTCATCTTTGCTCGTGTTATCGC 1559 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 AAAAGCAAGAGTCTATCAAAAACTCGGAGTAGCGGTGTCATGGAACAATCTTGATTTGCC 1619 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 TCCAAGACAATATCTCCAAATGCAGTCACAGTGCTCTACATTAGCTCGTGGGCCGTCCTG 1679 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 CATCGGAGAATGATCAGCCGCATGGGAGCACAATCTATTGGTCCCACCACAGAGGCTCCC 1739 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 AACCTGATCGACCGGTCAAAAAGAACTAAATCTCTTGGCGTTACATGATTCGATCTTCTG 1799 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 CCAGTGCATTGCCTCCAAGATGGGCGACAGATTTCTGTGTTGCAACCGACCATGTATGTA 1859 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 CTTTCATGGCATGCTCCTAGGGGCTCTGAAGGTTCGCTTACCTGTACATGATTTCCCCCG 1919 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 TTCCCTGAACTCCCTATCTCTGTAGATCGTACATAAGTTGTGTTTCCCAGTTTCTCGCAA 1979 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 TGTCGGTGTATCTCCTGGATGTAATACTGTATAATGAACTGCTTCATCCGTTCCAAAATA 2039 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 TAACATACTGGTACTAGATTATACATA 2066 consensus_1614#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||