These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [TTTGTCAGTTTCTTCCTCATTCTTCACATCCTCCTTAGTTTCCACANCTTTCTCACCTACTTGTAATTCTTCTCTNGGCTTTTACTCCACTTGAGTAGACAGAGGTACTTGTTTCTCTGCTTTTACAAGCAATGATCCTGACTCTGAGGNGCCAGCCTCTTCACCAGCTCAGTATCT] [+] EMBL AA750355 [TTTGTCAGTTTCTTCCTCATTCTTCACATCCTCCTTAGTTTCCACANCTTTCTCACCTACTTGTAATTCTTCTCTNGGCTTTTACTCCACTTGAGTAGACAGAGGTACTTGTTTCTCTGCTTTTACAAGCAATGATCCTGACTCTGAGGNGCCAGCCTCTTCACCAGCTCAGTATCT] consensusID : consensus_163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence [CTCTTCACTTTTGTCAGTTTCTNNCTCATTCTTCACATCCTCCTTAGTTTCCNNGNCTTTCTNACCTACTTGTAATTCTTCTCTNGGCTTTTNCTCCACTTGAGTAGACAGAGGTTCTTGTTTCTCTNCTTTNACAGAGCAATGA] [+] EMBL AA750317 [CTCTTCACTTTTGTCAGTTTCTNNCTCATTCTTCACATCCTCCTTAGTTTCCNNGNCTTTCTNACCTACTTGTAATTCTTCTCTNGGCTTTTNCTCCACTTGAGTAGACAGAGGTTCTTGTTTCTCTNCTTTNACAGAGCAATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_163#0 ---------TTTGTCAGTTTCTTCCTCATTCTTCACATCCTCCTTAGTTTCCACANCTTT 51 consensus_163#1 CTCTTCACTTTTGTCAGTTTCTNNCTCATTCTTCACATCCTCCTTAGTTTCCNNGNCTTT 60 ************* **************************** ***** consensus_163#0 CTCACCTACTTGTAATTCTTCTCTNGGCTTTTACTCCACTTGAGTAGACAGAGGTACTTG 111 consensus_163#1 CTNACCTACTTGTAATTCTTCTCTNGGCTTTTNCTCCACTTGAGTAGACAGAGGTTCTTG 120 ** ***************************** ********************** **** consensus_163#0 TTTCTCTGCTTTTACA-AGCAATGATCCTGACTCTGAGGNGCCAGCCTCTTCACCAGCTC 170 consensus_163#1 TTTCTCTNCTTTNACAGAGCAATGA----------------------------------- 145 ******* **** *** ******** consensus_163#0 AGTATCT 177 consensus_163#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||