These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1630#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 909 fasta sequence [TGGCTTGGCAAAGCCAGCGAGCGCCCTTGATATCGACGGCCACGCCTCCTCCAACCTCGTCTGCACCCACGCCACCAACGACCACCGAAATACCGTCAAAATGGCCCGTCGTCCCGCGAGATGTTACCGTTACTGCAAGAACAAGCCGTACCCTAAGTCGCGCTTCAACCGTGGTGTCCCCGACCCCAAGATTCGCATCTTCGATCTCGGTCGCAAGAAGGCCAACGTCGACGAGTTCCCCCTCTGCGTTCACCTCGTCTCCAACGAGTATGAGCAGGTCTCCTCTGAGGCCCTCGAGGCTGCCCGTATTTGCGCCAACAAGTACATGGTGAAGACCGCCGGAAAGGAAGCCTTCCACCTCCGCGTCCGCGCCCACCCCTACCACGTCGTCCGTATCAACAAGATGTTGTCTTGCGCCGGTGCCGATAGACTTCAGACTGGTATGCGTGGTGCCTTCGGCAAGCCCAACGGCCTTGTCGCCCGTGTCAACATTGGCCAGATCATCCTTTCTTGCCGTACTCGCGACGCCCTCCGCCCCAACGTCATTGAGGCTCTCCGTCGCTCCCAGTACAAGTTCCCCGGTCGCCAAAAGATCATCGTCTCCAAGAACTGGGGCTTCACTCCCCTCCGCCGTGAGGAGTACGTCGCCAAGCGCCAGTCTGGCCAGGTCCGTGTCGACGGTGCCTACGTCCAGTTCCTCAGCACCAGGGGTCCCCTTGAGTACAACATGCGCCGTTTCCCCGAGGCCTTCGAGACTGAGGCTTAGATACCCCAGTCCAAGGACATTCGGTGTGGTGGCGAGGAGGCTAGTTGGAGGGCAGGCATGAAAGTATACCGGCGTTGGTAGAATATGTTTGCTTCCCTTCTTTTTTCGGAACGCCTCTGAGCCGCTAGATGACAATGAAAGCA] [+] EMBL AK119983 [TGGCTTGGCAAAGCCAGCGAGCGCCCTTGATATCGACGGCCACGCCTCCTCCAACCTCGTCTGCACCCACGCCACCAACGACCACCGAAATACCGTCAAAATGGCCCGTCGTCCCGCGAGATGTTACCGTTACTGCAAGAACAAGCCGTACCCTAAGTCGCGCTTCAACCGTGGTGTCCCCGACCCCAAGATTCGCATCTTCGATCTCGGTCGCAAGAAGGCCAACGTCGACGAGTTCCCCCTCTGCGTTCACCTCGTCTCCAACGAGTATGAGCAGGTCTCCTCTGAGGCCCTCGAGGCTGCCCGTATTTGCGCCAACAAGTACATGGTGAAGACCGCCGGAAAGGAAGCCTTCCACCTCCGCGTCCGCGCCCACCCCTACCACGTCGTCCGTATCAACAAGATGTTGTCTTGCGCCGGTGCCGATAGACTTCAGACTGGTATGCGTGGTGCCTTCGGCAAGCCCAACGGCCTTGTCGCCCGTGTCAACATTGGCCAGATCATCCTTTCTTGCCGTACTCGCGACGCCCTCCGCCCCAACGTCATTGAGGCTCTCCGTCGCTCCCAGTACAAGTTCCCCGGTCGCCAAAAGATCATCGTCTCCAAGAACTGGGGCTTCACTCCCCTCCGCCGTGAGGAGTACGTCGCCAAGCGCCAGTCTGGCCAGGTCCGTGTCGACGGTGCCTACGTCCAGTTCCTCAGCACCAGGGGTCCCCTTGAGTACAACATGCGCCGTTTCCCCGAGGCCTTCGAGACTGAGGCTTAGATACCCCAGTCCAAGGACATTCGGTGTGGTGGCGAGGAGGCTAGTTGGAGGGCAGGCATGAAAGTATACCGGCGTTGGTAGAATATGTTTGCTTCCCTTCTTTTTTCGGAACGCCTCTGAGCCGCTAGATGACAATGAAAGCA] consensusID : consensus_1630#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 851 fasta sequence [CGACATCCAACACCCAGTTCGCAGGAAGTGCATTCACCCCATTTCCAGCACTCAAAATGGCCCGCCGTCCCGCACGTTGCTACCGGTACTGCAAGAACAAGCCGTACCCTAAGTCCCGTTTCAACCGTGGTGTTCCCGACCCCAAGATTCGCATCTTCGACCTTGGTCGCAAGAAGGCTTCCGTCGATGACTTCCCCATGTGTGTTCACCTCGTCTCCAACGAGTACGAGCAGCTGTCCTCCGAGGCTCTTGAGGCCGCCCGTATCTGTGCCAACAAGTACCTCGTGAAGATCGCTGGTAAGGAAGGTTTCCACCTGCGTGTCCGTGTCCACCCCTTCCACGTCGTCCGTATCAACAAGATGTTGTCGTGCGCTGGTGCCGATCGTCTGCAGACCGGTATGCGTGGTGCCTTCGGTAAGCCCCAGGGTCTCGTCGCCCGTGTGAACATTGGCCAGATTCTTCTGTCCGTCCGCACCCGTGACTCCAACCGTGCCGCCGCCATCGAGGCTCTCCGCCGCTCCATGTACAAGTTCCCCGGTCGCCAAAAGATCATTGTCTCCAAGAACTGGGGTTTCACCCCCGTTCGCCGCGAGGAGTACGTCCAGCTCCGCCAGGAGGGCAAGCTCCGCCAGGACGGTGCCTACGTTCAGTTCCTCCGTGGCCACGGTCTGATCGAGGAGAACATGAAGCGCTTCCCCGAGGCCTACGAGAACGTTTCTCAGGCTTAGATGGTTATTGGATGAATCCAGAATACGAATTCAGAACGAAAAAATTACATGGATGTTCTATTAACTGTCTCCTTCCTGTTTAACAAAGCTTGATATCTCGTCTGCAATCTTAATGGAGTTCTT] [+] EMBL AK110755 [CGACATCCAACACCCAGTTCGCAGGAAGTGCATTCACCCCATTTCCAGCACTCAAAATGGCCCGCCGTCCCGCACGTTGCTACCGGTACTGCAAGAACAAGCCGTACCCTAAGTCCCGTTTCAACCGTGGTGTTCCCGACCCCAAGATTCGCATCTTCGACCTTGGTCGCAAGAAGGCTTCCGTCGATGACTTCCCCATGTGTGTTCACCTCGTCTCCAACGAGTACGAGCAGCTGTCCTCCGAGGCTCTTGAGGCCGCCCGTATCTGTGCCAACAAGTACCTCGTGAAGATCGCTGGTAAGGAAGGTTTCCACCTGCGTGTCCGTGTCCACCCCTTCCACGTCGTCCGTATCAACAAGATGTTGTCGTGCGCTGGTGCCGATCGTCTGCAGACCGGTATGCGTGGTGCCTTCGGTAAGCCCCAGGGTCTCGTCGCCCGTGTGAACATTGGCCAGATTCTTCTGTCCGTCCGCACCCGTGACTCCAACCGTGCCGCCGCCATCGAGGCTCTCCGCCGCTCCATGTACAAGTTCCCCGGTCGCCAAAAGATCATTGTCTCCAAGAACTGGGGTTTCACCCCCGTTCGCCGCGAGGAGTACGTCCAGCTCCGCCAGGAGGGCAAGCTCCGCCAGGACGGTGCCTACGTTCAGTTCCTCCGTGGCCACGGTCTGATCGAGGAGAACATGAAGCGCTTCCCCGAGGCCTACGAGAACGTTTCTCAGGCTTAGATGGTTATTGGATGAATCCAGAATACGAATTCAGAACGAAAAAATTACATGGATGTTCTATTAACTGTCTCCTTCCTGTTTAACAAAGCTTGATATCTCGTCTGCAATCTTAATGGAGTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1630#0 TGGCTTGGCAAAGCCAGCGAGCGCCCTTGATATCGACGGCCACGCCTCCTCCAACCTCGT 60 consensus_1630#1 ------------------------------------------CGACATCCAACACCCAGT 18 ** * * *** ** consensus_1630#0 CTGCACCCACGCCACCAACGACCACCGAAATACCGTCAAAATGGCCCGTCGTCCCGCGAG 120 consensus_1630#1 TCGCAGGAAGTGCATTCACCCCATTTCCAGCAC--TCAAAATGGCCCGCCGTCCCGCACG 76 *** * ** ** * * ** ************* ******** * consensus_1630#0 ATGTTACCGTTACTGCAAGAACAAGCCGTACCCTAAGTCGCGCTTCAACCGTGGTGTCCC 180 consensus_1630#1 TTGCTACCGGTACTGCAAGAACAAGCCGTACCCTAAGTCCCGTTTCAACCGTGGTGTTCC 136 ** ***** ***************************** ** ************** ** consensus_1630#0 CGACCCCAAGATTCGCATCTTCGATCTCGGTCGCAAGAAGGCCAACGTCGACGAGTTCCC 240 consensus_1630#1 CGACCCCAAGATTCGCATCTTCGACCTTGGTCGCAAGAAGGCTTCCGTCGATGACTTCCC 196 ************************ ** ************** ****** ** ***** consensus_1630#0 CCTCTGCGTTCACCTCGTCTCCAACGAGTATGAGCAGGTCTCCTCTGAGGCCCTCGAGGC 300 consensus_1630#1 CATGTGTGTTCACCTCGTCTCCAACGAGTACGAGCAGCTGTCCTCCGAGGCTCTTGAGGC 256 * * ** *********************** ****** * ***** ***** ** ***** consensus_1630#0 TGCCCGTATTTGCGCCAACAAGTACATGGTGAAGACCGCCGGAAAGGAAGCCTTCCACCT 360 consensus_1630#1 CGCCCGTATCTGTGCCAACAAGTACCTCGTGAAGATCGCTGGTAAGGAAGGTTTCCACCT 316 ******** ** ************ * ******* *** ** ******* ******** consensus_1630#0 CCGCGTCCGCGCCCACCCCTACCACGTCGTCCGTATCAACAAGATGTTGTCTTGCGCCGG 420 consensus_1630#1 GCGTGTCCGTGTCCACCCCTTCCACGTCGTCCGTATCAACAAGATGTTGTCGTGCGCTGG 376 ** ***** * ******** ****************************** ***** ** consensus_1630#0 TGCCGATAGACTTCAGACTGGTATGCGTGGTGCCTTCGGCAAGCCCAACGGCCTTGTCGC 480 consensus_1630#1 TGCCGATCGTCTGCAGACCGGTATGCGTGGTGCCTTCGGTAAGCCCCAGGGTCTCGTCGC 436 ******* * ** ***** ******************** ****** * ** ** ***** consensus_1630#0 CCGTGTCAACATTGGCCAGATCATCCTTTCTTGCCGTACTCGCGACGCCCTCCGCCCCAA 540 consensus_1630#1 CCGTGTGAACATTGGCCAGATTCTTCTGTCCGTCCGCACCCGTGACTCCAACCGTGCCGC 496 ****** ************** * ** ** *** ** ** *** ** *** ** consensus_1630#0 CGTCATTGAGGCTCTCCGTCGCTCCCAGTACAAGTTCCCCGGTCGCCAAAAGATCATCGT 600 consensus_1630#1 CGCCATCGAGGCTCTCCGCCGCTCCATGTACAAGTTCCCCGGTCGCCAAAAGATCATTGT 556 ** *** *********** ****** ****************************** ** consensus_1630#0 CTCCAAGAACTGGGGCTTCACTCCCCTCCGCCGTGAGGAGTACGTCGCCAAGCGCCAGTC 660 consensus_1630#1 CTCCAAGAACTGGGGTTTCACCCCCGTTCGCCGCGAGGAGTACGTCCAGCTCCGCCAGGA 616 *************** ***** *** * ***** ************ ****** consensus_1630#0 TGGCCAGGTCCGTGTCGACGGTGCCTACGTCCAGTTCCTCAGCACCAGGGGTCCCCTTGA 720 consensus_1630#1 GGGCAAGCTCCGCCAGGACGGTGCCTACGTTCAGTTCCTCCGTGGCCACGGTCTGATCGA 676 *** ** **** ************** ********* * * **** * ** consensus_1630#0 GTACAACATGCGCCGTTTCCCCGAGGCCTTCGAGACTGAGGCTTAGATACCCCAGTCCAA 780 consensus_1630#1 GGAGAACATGAAGCGCTTCCCCGAGGCCTACGAGAACGTTTCTCAGG---CTTAG---AT 730 * * ****** ** ************* ***** * ** ** * ** * consensus_1630#0 GGACATTCGGTGTGGTGGCGAGGAGGCTAGTTGGAGGGCAGGCATGAAAGTATACCGGCG 840 consensus_1630#1 GGTTATTGGATGAAT---CCAGAATACGAATTC-AGAACG---AAAAAATTACATGGATG 783 ** *** * ** * ** * * * ** ** * * *** ** * * * consensus_1630#0 TTGGTAGAATATGTTTGCTTCCCTTCTTTTTTCGGAACGCCTCTGAGCCGCTAGATGACA 900 consensus_1630#1 TTC-TATTAACTGTCTCCTTCCTGTTTAACAAAGCTTGATATCTCGTCTGC--AATCTTA 840 ** ** * *** * ***** * * * *** * ** ** * consensus_1630#0 ATGAAAGCA-- 909 consensus_1630#1 ATGGAGTTCTT 851 *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||