These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [GACGTCGACATCGGCAGCTCCGCCATCGCCAGCGCCATCCTCCACCTCGCGCTCGGCGCGGTCACCTCCGTCACCATCGACATGGGGTTCCTCGTCGAGTCCCAGTCCGAGGAGGAGCTCCCCGAGAGGCTCTTCGGCGCCGTGCGCATCGCGCAGATGGAGATGGGCGCCGCCAAGTATGTCGAGACGGCGCCCGACGATGTGGTCCCCGACGCCGGCAGGGCTGGCGCCGGATTCAGGGTTCACTCGGCGAAGGTGGCCAACGATAGCCGCCACCAAGAACGCGCCGCCGGCAAGGTCGGGAGGTCGATGAGCTGCCAGGAACGCGGGAGCGGAGGAGGAGGAAAATAGATGCGAAGGAAGAGAGATCTTTGGATGGAGAAAGAGGGGATTGAGATCGAACTAGCCGGAGGAGAAAGGCCGGGGCACATAAAATGGGGAAGCGGCGAATACTCCCTTGATCATAATGTGCAAGTCACTGATTAAGCTGTGATCAGAACTGAAACCTGATCGATGAGAATAGTATATTATTCGTAATTATGATGCCAT] [+] EMBL AK062416 [GACGTCGACATCGGCAGCTCCGCCATCGCCAGCGCCATCCTCCACCTCGCGCTCGGCGCGGTCACCTCCGTCACCATCGACATGGGGTTCCTCGTCGAGTCCCAGTCCGAGGAGGAGCTCCCCGAGAGGCTCTTCGGCGCCGTGCGCATCGCGCAGATGGAGATGGGCGCCGCCAAGTATGTCGAGACGGCGCCCGACGATGTGGTCCCCGACGCCGGCAGGGCTGGCGCCGGATTCAGGGTTCACTCGGCGAAGGTGGCCAACGATAGCCGCCACCAAGAACGCGCCGCCGGCAAGGTCGGGAGGTCGATGAGCTGCCAGGAACGCGGGAGCGGAGGAGGAGGAAAATAGATGCGAAGGAAGAGAGATCTTTGGATGGAGAAAGAGGGGATTGAGATCGAACTAGCCGGAGGAGAAAGGCCGGGGCACATAAAATGGGGAAGCGGCGAATACTCCCTTGATCATAATGTGCAAGTCACTGATTAAGCTGTGATCAGAACTGAAACCTGATCGATGAGAATAGTATATTATTCGTAATTATGATGCCAT] consensusID : consensus_1640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [ACAGTGTGAGAGATGGGCGCCCCCAAGTATGTCGAGACGGCGCCCGGAACAATGTGGTCCCCGAGCCCAGACAGGCTGGCACCAGGATTCAGGGTTCACTCGCCGAAGGTGCCAACGATAGCCCCCCCCCAGAGAACGCGCCCGCCGGCAAGGTCGGGAGTCGATGACTGCCACGAGGAACGCGAGACCGGAGGAGGAGGAAAATAAGATGCGAAGGAAAGAGAGATCTTTGGATGGAGAAAGAGGGGATTGAGATCGAACTACCGGAGGAGAAAGCCCGGGGCACATAAAATGGGGAACCGGCGAATACTCCCCGTGGATCATAAGTGTCGCAAGTCACTGATTAAGCTGTGGATCAAGAACTGAAACCTGATCGATGAGAATAGTA] [+] EMBL BI811372 [ACAGTGTGAGAGATGGGCGCCCCCAAGTATGTCGAGACGGCGCCCGGAACAATGTGGTCCCCGAGCCCAGACAGGCTGGCACCAGGATTCAGGGTTCACTCGCCGAAGGTGCCAACGATAGCCCCCCCCCAGAGAACGCGCCCGCCGGCAAGGTCGGGAGTCGATGACTGCCACGAGGAACGCGAGACCGGAGGAGGAGGAAAATAAGATGCGAAGGAAAGAGAGATCTTTGGATGGAGAAAGAGGGGATTGAGATCGAACTACCGGAGGAGAAAGCCCGGGGCACATAAAATGGGGAACCGGCGAATACTCCCCGTGGATCATAAGTGTCGCAAGTCACTGATTAAGCTGTGGATCAAGAACTGAAACCTGATCGATGAGAATAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1640#0 GACGTCGACATCGGCAGCTCCGCCATCGCCAGCGCCATCCTCCACCTCGCGCTCGGCGCG 60 consensus_1640#1 ------------------------------------------------------------ consensus_1640#0 GTCACCTCCGTCACCATCGACATGGGGTTCCTCGTCGAGTCCCAGTCCGAGGAGGAGCTC 120 consensus_1640#1 ------------------------------------------------------------ consensus_1640#0 CCCGAGAGGCTCTTCGGCGCCGTGCGCATCGCGCAGATGGAGATGGGCGCCGCCAAGTAT 180 consensus_1640#1 ------------------------------ACAGTGTGAGAGATGGGCGCCCCCAAGTAT 30 * * ************ ******** consensus_1640#0 GTCGAGACGGCGCCCG--ACGATGTGGTCCCCGACGCCGGCAGGGCTGGCGCC-GGATTC 237 consensus_1640#1 GTCGAGACGGCGCCCGGAACAATGTGGTCCCCGAGCCCAGACAGGCTGGCACCAGGATTC 90 **************** ** ************* ** * ******* ** ****** consensus_1640#0 AGGGTTCACTCGGCGAAGGTGGCCAACGATAGCCGCCACC--AAGAACGCGCC-GCCGGC 294 consensus_1640#1 AGGGTTCACTCGCCGAAGGTG-CCAACGATAGCCCCCCCCCAGAGAACGCGCCCGCCGGC 149 ************ ******** ************ ** ** ********** ****** consensus_1640#0 AAGGTCGGGAGGTCGATGA--GCTGCCAGGAACGCGGGAGCGGAGGAGGAGGAAAATA-G 351 consensus_1640#1 AAGGTCGGGAG-TCGATGACTGCCACGAGGAACGCGAGACCGGAGGAGGAGGAAAATAAG 208 *********** ******* ** * ********* ** ****************** * consensus_1640#0 ATGCGAAGGAA-GAGAGATCTTTGGATGGAGAAAGAGGGGATTGAGATCGAACTAGCCGG 410 consensus_1640#1 ATGCGAAGGAAAGAGAGATCTTTGGATGGAGAAAGAGGGGATTGAGATCGAACTA-CCGG 267 *********** ******************************************* **** consensus_1640#0 AGGAGAAAGGCCGGGGCACATAAAATGGGGAAGCGGCGAATACTCCC--TTGATCATAA- 467 consensus_1640#1 AGGAGAAAGCCCGGGGCACATAAAATGGGGAACCGGCGAATACTCCCCGTGGATCATAAG 327 ********* ********************** ************** * ******** consensus_1640#0 TGT-GCAAGTCACTGATTAAGCTGTG-ATCA-GAACTGAAACCTGATCGATGAGAATAGT 524 consensus_1640#1 TGTCGCAAGTCACTGATTAAGCTGTGGATCAAGAACTGAAACCTGATCGATGAGAATAGT 387 *** ********************** **** **************************** consensus_1640#0 ATATTATTCGTAATTATGATGCCAT 549 consensus_1640#1 A------------------------ 388 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||