These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 714 fasta sequence [ATCGATCTTAATTTCTCATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGCCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA-CGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGCNGGCGTC-GCG-CCGCCGT-CGGGGCTGGCGCTGACG-CGCCCTCGGGGTTGGCGCCGGCGCCGCC-GGCGCCGCCGGG-GCTGGAGTTGGAGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCTGAGGGCGCCGCCGGCG-TGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATTTTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGTGCTAATTCATCCTTCACTCCATTAATTTGTTATAAATATATATCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAGTTATGGGTGGATCAAAAAATACTCCCCCCGTCCCAAAAA] [+] EMBL AK109576 [ATCGATCTTAATTTCTCATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGCCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTAGCGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGCCGGCGTCGGCG CCGCCGT CGGGGCTGGCGCTGACGCCGCCCTCGGGGTTGGCGCCGGCGCCGCC GGCGCCGCCGGG GCTGGAGTTGGAGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCTGAGGGCGCCGCCGGCG TGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATTTTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGTGCTAATTCATCCTTCACTCCATTAATTTGTTATAAATATATATCCTTGTACTA ] [+] EMBL C72273 [ TTTCTCATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGCCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA NGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGCNGGCGTC GCG CCGCCGT CGGGGCTGGCGCTGACG CGNCCTCGGGGTTGGCGCCGGCGCCGCN GGCACCG GGG GCTGGAGTTGGAGCTGGAATTTGAGCCGCCGCCAACGT ] [+] EMBL C73304 [ TTCTNATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATNAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA NGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGCNGGCTTC GNG CCGCCNT CGGGGCTGGCGCTGACG CGCCC ] [+] EMBL C73301 [ CTCATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGGCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA GGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGTTAGNGTC GCG CCGCCGT CGGGGCTGGCGCTGACG CGNCCTCGGGGTTGGCGCCGNCGCCG ] [+] EMBL C98711 [ TCATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGCCGTGGCGGCGCTGTTCCTCGCNGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA CGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGTNGGCGTC GCG CCGCCGT CGGGGCTGGCGCTGACG CGCCCTCGGGGTTGGCGCCGGCG CGCCNGGCNCGG GGG GCTGGAGTTGGAGCTGGAATTGGAGCCGCCGCCAACGTCGCC ] [+] EMBL C72831 [ ATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGCCGTGGCGGCGCTGTTCCTCGCNGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA CGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGTGAGCGTC GCG CCGCCGT CGGGGCTGGCGCTGACG CGCCCTCGGGGTTGGCGCCGGCGCCGCC GNGACACNGGGNGCTGGAGTTGGAGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCTGAGGGCGCCGCCGGCGTTGGCAACCAAGGTGCATTTGTNAGATCG ] [+] EMBL AU069832 [ TCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA GGCCCACGTCGGGGTTGGGGCTGGGGCTGG ] [+] EMBL C73363 [ CTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA GNCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGCCGGCNTC GCGNCCGCCGTNCGGGGCTGGCGCTNACG CGCCTTCGGGGTTGGng ] [+] EMBL C73278 [ CTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTA NGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGCNGGCNTC GCG CCGCCGT CGGGGCTGGCGCTAACG CGCCCTCGGGGTTGGNGC ] [+] EMBL AU094200 [ TCCTCNCCGCCGTGGTGGT GCCGGCGNCGCTGGCGCTAGCGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGCCGGCGTCGGCG CCGCCGT CGGGGCTGGCGCTGACGCCGCCCTCGGGGTTGGCGCCGGCGCCGCC GGCGCCGCCGGG GCTGGAGTTGGAGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCTGAGGGCGCCGCCGGCG TGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATTTTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGTGCTAATTCATCCTTCACTCCATTAATTTGTTATAAATATATATCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAGTTATGGGTGGATCAAAAAA ] [+] EMBL AU182548 [ CGCCGT CGGGGCTGGCGCTGACGCCGCCTTCGGGGTTGGCGCCGGCGCCGCC GGCGCCGCCGGG GCTGGAGTTGGAGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCTGAGGGCGCCGCCGGCG TGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATTTTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGTGCTAATTCATCCTTCACTCCATTAATTTGTTATAAATAaaaaa ] [+] EMBL AU094238 [ GCCNT CGGGGCTGGCGCTGACGCCGCCCTNGGGGTTGGCGCCGGCGCCGCC GGCNCCGCCGGG GCTGNAGTTGGAGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCTGAGGGCGCCGCCGGCG TGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCANCGGCTCCGGCGATCCATATTTTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGTGCTAATTCATCCTTCACTCCATTAATTTGTTATAAATATATATCCTTGTACTAGTGTAAAaa ] [+] EMBL AU182541 [ CTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCTGAGGGCGCCGCCGGCG TGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATTTTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGTGCTAATTCATCCTTCACTCCATTAATTTGTTATAAATATATATCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAGTTATGGGTGGATCATCATATACTCCCCCCGTCCCAAAAA] consensusID : consensus_16456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 653 fasta sequence [TTAATTTCTCTCTTCATCATCATCTCGNTCTCGATCTNCTACAGAAGCTACAATAGCCAGGAAATNAATCGATCGNTCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCGCCGGCGCTA-CGCCCACGTCGGGGTTGGGGCTGGGGCCGGGGCCGACGCCGGCGTCGGTGCCGCCGTCGGGGCC-GGCGC-TGACGCCGCCCTCGGGGTTGGCGCCAACGCCGCCGGCGC-CGCCGGGGCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGAGGGCGCCGCCGGCGTG-GCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGGCGCGGCGTACATCTCCACGACTCCATCCGCCCGTAGCGGCGCCGGCCATCGATCCACGACCATTCGCCGTCGATTGTTTTTGTTGTTAATAATTAAAGTTTGGTTAATTTAACCGCCAAGTGTTTGGTTGTTTATTTTATACTCTATCCGTACTAATAAAGAAAGTCGTTTAGGATAAAAAAAAAGTCAAATCTTGGAAATATAAATAATGAACAACTCTCAAATTATTGAGTTTGAAAAAAAA] [+] EMBL C72795 [TTAATTTCTCTCTTCATCATCATCTCGNTCTCGATCTNCTACAGAAGCTACAATAGCCAGGAAATNAATCGATCGNTCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCGCCGGCGCTA CNCCCACNTCGGGGTTGGGGCT GGGCCGGGGCCGACGCCGGCGTCGGTGCCGCCGTCGGGGCC GGCGCTTGACGCCGCCCTCGGGGTTTGNGCCAANGCCGCC GCGCNCGCC GGGCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGT ] [+] EMBL AU182544 [ TCATCATCTCGCTCTCGATCTCCTACAGAAGCTACAATAGCCAGCAAATCAATCGATCGATCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCGCCGGCGCTAGCGCCCACGTCGGGGTTGGGGCTGGGGCCGGGGCCGACGCCGGCGTCGGTGCCGCCGTCGGGGCC GGCGC TGACGCCGCCCTCGGGGTTGGCGCCAACGCCGCCGGCGC CGCCGGGGCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGAGGGCGCCGCCGGCGTG GCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGGCGCGGCGTACATCTCCACGACTCCATCCGCCCG ] [+] EMBL AU182545 [ GCCCACGTCGGGGTTGGGGCTGGGGCCGGGGCCGACGCCGGCGTCGGTGCCGCCGTCGGGGCC GGCGC TGACGCCGCCCTCGGGGTTGGCGCCAACGCCGCCGGCGC CGCCGGGGCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGAGGGCGCCGCCGGCGTG GCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGGCGCGGCGTACATCTCCACGACTCCATCCGCCCGTAGCGGCGCCGGCCATCGATCCACGACCATTCGCCGTCGATTGTTTTTGTTGTTAATAATTAAAGTTTGGTTAATTTAACCGCCAAGTGTTTGGTTGTTTATTTTATACTCTATCCGTACTAATAAAGAAAGTCGTTTAGGATAAAAAAAA ] [+] EMBL AU076061 [ CGCCGGCGTCGGTGCCNCCGTCGGGGCCGGGCGC TAACNCCGCCCTCGGGGTTGGCGCCAACGCCGCCGGCGC CGCCGGGGCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGAGGGCGCCGCCGGCGTG GCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGGCGCGGCGTACATCTCCACGACTCCATCCGCCCGTAGCGGCGCCGGCCATCGATCCACGACCATTCGCCGTCGATTGTTTTTGTTGTTAATAATTAAAGTTTGGTTAATTTAACCGCCAAGTGTTTGGTTGTTTATTTTATACTCTATCCGTACTAATAAAGAAAGTCGTTTAGGATAATGTTTAAGTCAAATCTTGGAAATATAAATAATGAACAACTCTCAAATTATTGAGTTTGAAAAAAAA] [+] EMBL AU094018 [ GGGGTTGGCGCCAACGCCGCCGG GC CGCCGGNGCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGAGGGCGCCGCCGGCGTGNGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGGCGCGNCGTACATCTCCACGACTCCATCCGCCCGTAGCGGCGCCGGCCATCGATCCACGACCATTCGCCGTCGATTGTTTTTGTTGTTAATAATTAAAGTTTGGTTAATTTAACCGCCAAGTGTTTGGTTGTTTATTTTATACTCTATCCGTACTAATAAAGAAAGTCGTTTAGGAAAAAAAA ] consensusID : consensus_16456#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 428 fasta sequence [AATTTCTCTCTTCATCATCATCTCGCTCTCGATCTCCTACAGAAGCTACAATAGCCAGCAAATCAATCGATCGATCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCGCCGGCGCTANGCCCACGTCGGGGTTGGGGCTGGGGCCGGGGCCGACGCCGGCGTCGGTGCCGCCGTCGGGGCCGGCGCTGACGCGCCCTCGGGGTTGGCGCCAACGCCGCCGGGCCG-CGGGACTTGAGTTTGGGCTTNGAATTTGAGCCGCCGCAACGTCGNCGGGTCTTTTAACCGGCGNCGCCAAGGGCGCCGNCGAGTTGGCAACCAAAGTCATNTTTTAAATCAATCATTCAATCAACCGGCGGGCGTAAATTTCAAGAATTCAA] [+] EMBL C72231 [AATTTCTCTCTTCATCATCATCTCGCTCTCGATCTCCTACAGAAGCTACAATAGCCAGCAAATCAATCGATCGATCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCGCCGGCGCTAGGCCCACGTCGGGGTTGGGG TGGGG CGGGGCCGACGNCGGCGTCGGTGCCGCCGTCGGGGCCGGCGCTGACGCGCCCTCGGGGTTGGCGCCAACGCCGCCGGGCCG CGGGACTTGAGTTTGGGCTTNGAATTTGAGCCGCCGCAACGTCGNCGGGTCTTTTAACCGGCGNCGCCAAGGGCGCCGNCGAGTTGGCAAC ] [+] EMBL C72869 [ ATTTCTCTCTTCATCATCATCTCGCTCTCGATCTCCTACAGAAGCTACAATAGCCAGCAAATCAATCGATCGATCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCGCCGGCGCTACGCCCACGTCGGGGTTGGGGCTGGGGCCGGGGCCGACGCCGGCGTCGGTGCCGCCGTCGGGGCCGGCGCTGACGCGCCCTCGGGGTTGGCGCCAACGCCGCCGGGCCGCCGGGGCTGGAGTTGGGGC TGGAATTGGAGCCGCCGCAACGTCGCCGGGTC TCTCACAGGCGCCGCNAAGGGCGCCGCCGGGTTGGCAACCAAAGTCATNTTTTAAATCAATCATTCAATCAACCGGCGGGCGTAAATTTCAAGAATTCAA] [+] EMBL C73343 [ TCTCTTCATCATCATCTCGCTCTCGATCTCCTACAGAAGCTACAATAGCCAGCAAATCAATCGATCGATCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCG CGGCGCTANGCCCACGTNGGGGTTGGGGCTGGGGCCGGGGCCGACGCCGGCGTCGGTNCCGCCGTCGGGGCCGGCGCTNACGCGCCCTCGGGNTTG ] [+] EMBL C73401 [ TCGATCTCCTACAGAAGCTACAATAGCCAGCAAATCAATCGATCGATCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCGCCGGCGCTANGCCCACGTCGGGGTTGGGGCTGGGGCCGGGGCCGACGCNGGCTTCGGTGCCGCCNTCGGGGCCGGCGCTAACGCGCCCTCGGGTTTGGCGCCAACGCCGCC ] consensusID : consensus_16456#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 420 fasta sequence [ATTTCTCTCTTCATCTTCTCGCTCTCGATCTCCTACAGAAGCTATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCATGAAGATGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGNGGCGCCGGCGCTANGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGTNGGCTTCGCNCCGCCNTCGGGGCTGGCGCTAACGCGCCCTCGGGTTTGGNNCCGGCNCCGCCNGGCNCNGGNGCCCTGGAATTTGGAGCTGGANTTGGAGCCGCCGCCAACTTNGCCGGGTCTTTAAACGGGCCGNTAAGGGCGCNCCCGGTTTGGNAACCAAAGGTCAATGTTTTAAAATTCAATCGATCGATNGAACGNGCCGGGNTTTCCATTTTCAA] [+] EMBL C99070 [ATTTCTCTCTTCATCTTCTCGCTCTCGATCTCCTACAGAAGCTATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCATGAAGATGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGNGGGNGGCGCCGGCGCTAc ] [+] EMBL C73317 [ TCTCTTCATCTTCTCGCTCTCGATCTCCTACAGAAGCTATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCATGAAGATGAACAAGATTGNCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGNGGCG CGGCGCTAN ] [+] EMBL C73390 [ nTTCATCTTCTCGCTCTCGATCTCCTACAGAAGCTATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCATGAAGATGAACAAGATTGCCGTGGCGGCGCTGTTCCTCGTCGCCGTGGTGGTGGCGGGCGGCG CGGCGCTAg ] [+] EMBL C73191 [ TCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTANGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGTNGGCTTCGCNCCGCCNTCGGGGCTGGCGCTAACGCGCCCTCGGGTTTGGNNCCGGCNCCGCCNGGCNCNGGNGCCCTGGAATTTGGAGCTGGANTTGGAGCCGCCGCCAACTTNGCCGGGTCTTTAAACGGGCCGNTAAGGGCGCNCCCGGTTTGGNAACCAAAGGTCAATGTTTTAAAATTCAATCGATCGATNGAACGNGCCGGGNTTTCCATTTTCAA] consensusID : consensus_16456#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [CACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATTTTTATAAATTCNCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCANATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGNGCTAATTCATCCTTCACNCCATTAATTTGTTATAAANANANANCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU182494 [CACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATTTTTATAAATTCNCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCANATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGNGCTAATTCATCCTTCACNCCATTAATTTGTTATAAANANANANCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_16456#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 306 fasta sequence [TNATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTANNCCCACGTNGGGGTTGGGGCTGGGGCTGGGGCCGACGNAGGNTTCGC-GCCGCCNTCGGGGCTGGCGCTAACGCGCCCTCGGGTTTGGNGCCGGCNCCGCNGNCNCGNGGN-N-CT--GNATTTGGAGCTGGAATTGGAGCCGCCGCCAACTTNGCCGGG] [+] EMBL AU069827 [TNATCTTTNCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTANNCCCACGTNGGGNTTGGGGCTGGGGCTGGGGCCGACGNAGGNTTCGC NCCGCCNTCGGGGCTGGCGCTAACGCGCCCTCGGGTTTGGNNCCGGCCCCGCNGACNCGNGGN N CTTNGNATTTGGAGCTGGAATTGGAGCCG ] [+] EMBL AU069793 [tcATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGGCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTANGCCCACGTCGGGGTTGGGGCTGGGGCTGGGGCCGACGNCGGCTTCGC GCCGCCNTCGGGGCTGGCGCTNACGCGCCCTCGGGTTTNGCGCCGGCNACGCNGNCNCGNGGN N CT GGANTTNGAGCTGGAATTGGAG ] [+] EMBL AU069795 [ TCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTANGCCCACGTCGGGNTTGGGGCTGGGGCTGGGGCCGACGTNGGNTTCGC GCCGCCNTCGGGGCTGGCGCTNACGCGCCCTCGGGTTTGGNGCCGGCNCCGCNGNCNC NGGNGNACT GNATTTGGAGCTGGAATTGNAGCCGCCGCCAACTTNGCCGGG] [+] EMBL AU069807 [ TCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTANNCCCACGTNGGGGTTGGGGCTGGGGCTGGGGCCGACGCNGGCTTCGC NCCGCCGTCGGGGCTGGCGCTAACGCGCCCTCGGGNTTGGAGCCGGCNCCGCNGGACCGNGGN N CT GGANTTGGAGCTGGAATTGGAGCCG ] [+] EMBL AU069806 [ TCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAGCAAATCAATCGATCGATCCGTACAATGGCGGCCCTGAAGATGAACAGGATGGNCGTGGCGGCGCTGTTCCTCGCCGCCGTGGTGGTGGCGGGCGGCGCTGGCGCTANNCCCACNTNGGGGTTGGGGCTGGGGCTGGGGCCGACGNAGGNTTCGCGGCCGCCNTCGGGGCTGGCGCTAACGCGCCC ] consensusID : consensus_16456#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 296 fasta sequence [GCCGCCGGCGCCGCCGGGTCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGGCGTGGCACCCAAGGTGCATGTGTGAGATCGATCGATCCATCGATCGATCGAGCGCGCGGCGGCGTCATCTCCACTACTCCATCCGCCCGTAGCAGCGCCGGCCATCGATCCACGACCATTCGCCGTCCATTGTTTTTGTTGTTAATAATCAAAGTTTGGTTAATTTAACCGTCAAGTGTTTGGTTGTTTATTTTATACTCCATCCGTACTGAT] [+] EMBL AU076060 [GCCGCCGGCGCCGCCGGGTCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGGCGTGGCACCCAAGGTGCATGTGTGAGATCGATCGATCCATCGATCGATCGAGCGCGCGGCGGCGTCATCTCCACTACTCCATCCGCCCGTAGCAGCGCCGGCCATCGATCCACGACCATTCGCCGTCCATTGTTTTTGTTGTTAATAATCAAAGTTTGGTTAATTTAACCGTCAAGTGTTTGGTTGTTTATTTTATACTCCATCCGTACTGAT] [+] EMBL AK107837 [ CGGCGCCGCCGGGGCTGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAACGTCGCCGGGTCTCTCACCGGCGCCGCCGGCGTGGCACCCAAGGTGCATGTGTGAGATCGATCGATCCATCGATCGATCGAGCGCGCGGCGGCGTCATCTCCACTACTCCATCCGCCCGTAGCAGCGCCGGCCATCGATCCACGACCATTCGCCGTCCATTGTTTTTGTTGTTAATAATCAAAGTTTGGTTAATTTAACCGTCAAGTGTTTGGTTGTTTATTTTATACTCCATCCGTACTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16456#3 ------ATTTCTCTCTTCATCTTCTCGCTCTCGATCTCCTACAGAAGCTATAGTAGCCAG 54 consensus_16456#5 ----------------TNATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAG 44 consensus_16456#2 --AATTTCTCTCTTCATCATCATCTCGCTCTCGATCTCCTACAGAAGCTACAATAGCCAG 58 consensus_16456#1 TTAATTTCTCTCTTCATCATCATCTCGNTCTCGATCTNCTACAGAAGCTACAATAGCCAG 60 consensus_16456#0 -ATCGATCTTAATTTCTCATCTTTTCGCTCTCGATCTCCTACAGAAGCAATAGTAGCCAG 59 consensus_16456#6 -------------------------------------------------------GCCGC 5 consensus_16456#4 ---------------------------------------CACCCAAGGTGCATGTGTGAG 21 * consensus_16456#3 CAAATCAATCGATCGATC----CGTACAATGGCGGCCATGAAGATGAACAAGATTGCC-G 109 consensus_16456#5 CAAATCAATCGATCGATC----CGTACAATGGCGGCCCTGAAGATGAACAGGATGGNC-G 99 consensus_16456#2 CAAATCAATCGATCGATCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCC-G 117 consensus_16456#1 GAAATNAATCGATCGNTCGATACGTGCAATGGCGGCCATGAAGGTGAACAAGATTGCC-G 119 consensus_16456#0 CAAATCAATCGATCGATC----CGTACAATGGCGGCCCTGAAGATGAACAGGATGGCC-G 114 consensus_16456#6 CGGCGCCGCCG---GGTC------TGGAGTTGGGGCTGGAATTGGAGCCGCCGCCAAC-G 55 consensus_16456#4 ---ATCGATCGATCGATCGA-GCGCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCG 77 ** * ** * * * * consensus_16456#3 TGGCGGCGCTGTTCCTCGTCGCCGTGGTGG--TGGCGGGN--GGCGCCGGCGCTANGCCC 165 consensus_16456#5 TGGCGGCGCTGTTCCTCGCCGCCGTGGTGG--TGGCGGGC--GGCGCTGGCGCTANNCCC 155 consensus_16456#2 TGGCGGCGCTGTTCCTCGTCGCCGTGGTGG--TGGCGGGC--GGCGCCGGCGCTANGCCC 173 consensus_16456#1 TGGCGGCGCTGTTCCTCGTCGCCGTGGTGG--TGGCGGGC--GGCGCCGGCGCTACGCCC 175 consensus_16456#0 TGGCGGCGCTGTTCCTCGCCGCCGTGGTGG--TGGCGGGC--GGCGCTGGCGCTACGCCC 170 consensus_16456#6 TCGCCGGGTCTCTCACCGGCGCCGCCGGCG--TGGCACCCAAGGTGCATGTGTGAGATCG 113 consensus_16456#4 CAGCGGCTCCGGCGATCCATATTTTTATAAATTCNCAGTCGATTGTTTGTTGTTAATCAA 137 ** * * * * * * consensus_16456#3 ACGTCGGGGTTGGGGCTGGGGCTGGGGCCGAC-GTNGGCTTC-G-CNCCGCCNTCGGGGC 222 consensus_16456#5 ACGTNGGGGTTGGGGCTGGGGCTGGGGCCGAC-GNAGGNTTC-G-CGCCGCCNTCGGGGC 212 consensus_16456#2 ACGTCGGGGTTGGGGCTGGGGCCGGGGCCGAC-GCCGGCGTC-GGTGCCGCCGTCGGGGC 231 consensus_16456#1 ACGTCGGGGTTGGGGCTGGGGCCGGGGCCGAC-GCCGGCGTC-GGTGCCGCCGTCGGGGC 233 consensus_16456#0 ACGTCGGGGTTGGGGCTGGGGCTGGGGCCGAC-GCNGGCGTC-G-CGCCGCCGTCGGGGC 227 consensus_16456#6 A--TCGATCCATCGATCGATCGAGCGCGCGGC-GGCGTCATC-TCCACTACTCCATCCGC 169 consensus_16456#4 AGTTTGGTTAATTTATCCGTCGAGTGTTTGGTTGTTTATTTCANATGCAAACCTCGCGAT 197 * * * * * * * ** * consensus_16456#3 TGGCGCTAACGC-GCCCTCGGGTTTGGNNCCGG-CNCCGCCNGGCNCNGGNGCCCTGGAA 280 consensus_16456#5 TGGCGCTAACGC-GCCCTCGGGTTTGGNGCCGG-CNCCGCNGN--CNCGNGGNNCTGNA- 267 consensus_16456#2 CGGCGCTGACGC-GCCCTCGGGGTTGGCGCCAA-CGCCGCCGG--GCCGCGGGACTTGAG 287 consensus_16456#1 CGGCGCTGACGCCGCCCTCGGGGTTGGCGCCAA-CGCCGCCGGCGCCGCCGGGGCTGGA- 291 consensus_16456#0 TGGCGCTGACGC-GCCCTCGGGGTTGGCGCCGG-CGCCGCCGGCGCCGCCGGGGCTGGA- 284 consensus_16456#6 CCGTAGCAGCGCCGGCCATCGATCCACGACCATTCGCCGTCCATTGTTTTTGTTGTTAAT 229 consensus_16456#4 TTGTGATAA-ATAATTACCGAAATGTATGTGTG-TGTGGGGNGCTAATTCATCCTTCACN 255 * * * consensus_16456#3 -TTTGGAGCTGGANT--TGGAGCCGCCGCCAACTTNGCCGGGTCTTTAAACGGGC--CGN 335 consensus_16456#5 -TTTGGAGCTGGAAT--TGGAGCCGCCGCCAACTTNGCCGGG------------------ 306 consensus_16456#2 -TTTGGGCTTNGAAT--TTGAGCCGCCGC-AACGTCGNCGGGTCTTTTAACCGGCGNCGC 343 consensus_16456#1 -GTTGGGGCTGGAAT--TGGAGCCGCCGCCAACGTCGCCGGGTCTCTCA-CCGGCGCCGC 347 consensus_16456#0 -GTTGGAGCTGGAAT--TGGAGCCGCCGCCAACGTCGCCGGGTCTCTCA-CCGGCGCCGC 340 consensus_16456#6 AATCAAAGTTTGGTTAATTTAACCGTCAAGTGTTTGGTTGTTTATTTTATACTCCATCCG 289 consensus_16456#4 CCATTAATTTGTTATAAANANANANCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAA 315 * * * consensus_16456#3 TAAGGGCGCNCCCGGTTTGGNAACCAAAG-GTCAATGTTTTAAAATTCAATCGATCGATN 394 consensus_16456#5 ------------------------------------------------------------ consensus_16456#2 CAAGGGCGCCGNCGAGTTGGCAACCAAAG-TCATNTTTTAAATCAATCATTCAATCAACC 402 consensus_16456#1 CGAGGGCGCCGCCGGCGTGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGC 407 consensus_16456#0 TGAGGGCGCCGCCGGCGTGGCACCCAAGGTGCATGTGTGAGATCGATCGATCGATCGAGC 400 consensus_16456#6 TACTGAT----------------------------------------------------- 296 consensus_16456#4 AAAAAAAAAAAAAAAAAAAAAAAA------------------------------------ 339 consensus_16456#3 GAA---CGNGCCGGGNTTTCCATTTTCAA------------------------------- 420 consensus_16456#5 ------------------------------------------------------------ consensus_16456#2 GGC---GGGCGTAAATTTCAAGAATTCAA------------------------------- 428 consensus_16456#1 GGCG--CGGCGTACATCTCCACGACTCCATCCGCCCGTAGCGGCGCCGGCCATCGATCCA 465 consensus_16456#0 GCGCCGCGGCTTCCATCTCCACGACTCCATCCGCCCGCAGCGGCTCCGGCGATCCATATT 460 consensus_16456#6 ------------------------------------------------------------ consensus_16456#4 ------------------------------------------------------------ consensus_16456#3 ------------------------------------------------------------ consensus_16456#5 ------------------------------------------------------------ consensus_16456#2 ------------------------------------------------------------ consensus_16456#1 CGACCATTCGCCGTCGATTGTTTTTGTTGTTAATAATTAAAGTTTGGTTAATTTAACCGC 525 consensus_16456#0 ---TTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGT 517 consensus_16456#6 ------------------------------------------------------------ consensus_16456#4 ------------------------------------------------------------ consensus_16456#3 ------------------------------------------------------------ consensus_16456#5 ------------------------------------------------------------ consensus_16456#2 ------------------------------------------------------------ consensus_16456#1 CAAGTGTTTGGTTGTTTATTTTATACTCTATCCGTACTAATAAAGAAAGTCGTTTAGGAT 585 consensus_16456#0 CGAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGA 577 consensus_16456#6 ------------------------------------------------------------ consensus_16456#4 ------------------------------------------------------------ consensus_16456#3 ------------------------------------------------------------ consensus_16456#5 ------------------------------------------------------------ consensus_16456#2 ------------------------------------------------------------ consensus_16456#1 AAAAAAAAAGTCAAATCTTGGAAATATAAATAATGAACAACTCTCAAATTATTGAGTTTG 645 consensus_16456#0 AATGTATGTGTGTGTGGGGTGCTAATTCATCCTTCACTCCATTAATTTGTTATAAATATA 637 consensus_16456#6 ------------------------------------------------------------ consensus_16456#4 ------------------------------------------------------------ consensus_16456#3 ------------------------------------------------------------ consensus_16456#5 ------------------------------------------------------------ consensus_16456#2 ------------------------------------------------------------ consensus_16456#1 AAAAAAAA---------------------------------------------------- 653 consensus_16456#0 TATCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAGTTATGGGTGGATCAAAAAATAC 697 consensus_16456#6 ------------------------------------------------------------ consensus_16456#4 ------------------------------------------------------------ consensus_16456#3 ----------------- consensus_16456#5 ----------------- consensus_16456#2 ----------------- consensus_16456#1 ----------------- consensus_16456#0 TCCCCCCGTCCCAAAAA 714 consensus_16456#6 ----------------- consensus_16456#4 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||