These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 30 consensus length = 614 fasta sequence [CGCTTCTTCTTCCGCCTCCGCCT-CCCATGGCAGCTCCCAG-C-TCGT-GGGACA-CC-TCCTTCCACGAAGCAACCACAGCAAG-G-CAATA-GCGCCACCCACC-GCTCGCATCCACAGCTGCTGATTCGT-AGGAGGAGCAGGC-CAGGGAGGGATTCGTTGATTTTATTTGGCA-GGGAAGGAG-AT-CCGAGAGGAAGAA-GGGGAATATAGAT-CGATGGGGAAGTACGT-GGAGCTGCTC-GACAT-GGGGGTGCGCATCGCCGCG-C-GGTTCCACTCCCAC-T-GCCCGCAGACGGCGAGGATGTACTACCACCCG-CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC-TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG-GCCGCCGCC-GACA-CCGCGGAGATCATCCTCTACG-CCGTCGTCTAGAGT-T-AGCCTCT-AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA-GGAATGTATTTTTCTTTT-GTTTTTCTTTAAAGAGGAAAAAAAACA-AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAAAAAAAA] [+] EMBL AK070315 [CGCTTCTTCTTCCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGA ] [+] EMBL OS1321715 [ CTTCTTCTTCCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCACTT NCCCGCAGACGGCGAGGATGTACTACCACCCGNCCGCCGTCCTCCTCCTNGT ] [+] EMBL AA751030 [ttCTTCTTCTTCCGCCTCCGCCG CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAACGAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCTACCACAGCTGCTGTATCGTGAGGAGGAcgag ] [+] EMBL CB682721 [ TTCCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCCCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGAGGAGATCATCCTCTACG CCGTCGACTAAAGT T AGCCTCG AGACTCTCGATCCAGACACTTCACGCGGAAATGGA GGAATGTATTTTGCTTTT GTTTTTCTTTAGAGAGGAAAAAAAACA AAGAGGACTTGCAGATTGGGTGATTTATTGATGGA ] [+] EMBL AU174543 [ TTCCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAGAATCCCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCTTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGNCTTCGCCGCGAAGAGGATGCCCCG ] [+] EMBL OSR14722A [ TTCCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC ] [+] EMBL CB635679 [ TCCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGTTTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGA CGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGCATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGA ] [+] EMBL OSC904 [ TCCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCACTT GCCCGCAGACGGCGAGGATGTAC ] [+] EMBL OS1321867 [ CCGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GNTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG G GGTTCCACTCCCAC T GCCCGTAGACGNCGAG ] [+] EMBL CF589237 [ CGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCTTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGAGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGAT ] [+] EMBL AU094479 [ CGCCTCCGCCT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAA ] [+] EMBL AU164633 [ CCG CT CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAAAAAAA ] [+] EMBL CB681363 [ CGCCT CCCTTGGCAGCTCCCAG CATCGT GGGACA CCATCCTTCCACGAAGCAACCACAGCAAG G CAATAGGCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCACGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCG ] [+] EMBL BI797981 [ GCCTCCCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGTTTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGA CGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGCATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAAC AAGTGGACTTGGAGATT GCTGCTTTATTGATGGAGTGAAATGAAAaaaaa ] [-] EMBL CB685839 [ T CCCATGGCAGCTCCCAG C TCGT GGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACATAAGTGGACTTGGAGATTGGTTGGTTTATTGAGGGAGTGAAATGAAATGAATGGAATGATTTGATAtt ] [+] EMBL OSC9231 [ CATNGCAGCTCCCAG C TCGT NGGACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CANGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGA GAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT NGAGCTGCTC GACAT TGGGGTNCGCATC NCGCG GGTTCCACTCCCAC T NCCCGCAGACNGCGAGGATGTACTACCACCCN CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCNCCGCCGCg ] [+] EMBL CB685838 [ ATGGCAGCTCCCAGTC TCGTAGGGACACCC TCCTTCCACGAAGCAACCACAGCAAGTGTCAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCTT ACGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCAAGAGGAACAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGA ] [+] EMBL AU069787 [ GACA CC TCCTTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACCGGCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTT CTCAGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC Tn ] [+] EMBL CB680705 [ TTCCACGAAGCAACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CACGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGAACGT GGAGCTGCTC AACAT GGGGGTGCGCATCACCGCGAC GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCCAAGAGGATGCCCCGGAGCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGTGT AGCCTCT AAACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGGATTTGTCGTTT GCTTTTCTTTAGAGAGGAAAAAAAACA AA ] [+] EMBL OS1363A [ ACCACAGCAAG G CAATA GCGCCACCCACC GCTCGCATCCACAGCTGCTGATTCGT AGGAGGAGCAGGC CAGGGAGGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGNCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGCTTGCGCGGGCTTCGCCGGGAAGAGGATGCCCCGG GCCGNCGCC GACA ACGNGGAGATCATCCTNTACG GCGTNGTCTAGAGT T AG CTTT AGANT TTGATTCAGANG TTTA GGGGAAAT ] [+] EMBL BI795275 [ CTGCTGATTCGT AGGAGGAGCAGGCACAGGGA GGTTTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGA CGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGCATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAAC AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAA ] [+] EMBL BI799769 [ GT AGGAGGAGCAGGC CAGGGAGGGTTTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGA CGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGCATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACC AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAA ] [+] EMBL OSS15671A [ GGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCNGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCCCGGNCTTCGCCGCNAAGAGGATGCCCCGG GCCGCCGCC GACACCCGCGGAGATCATCCTCTANGNCCGTCGTCTAGAGT TAAGCCTCTAAGACTCTCGA ] [+] EMBL OSS15439A [ GGGATTCGTTGATTTTATTTGGCA GGGAAGGAG AT CCGAGAGGAAGAA GGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG NCGNCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGNCGNCGCCGGTTC GCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATTCCCCGG GCCGCCGCC GACA ACGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAAACGGTTCACGCGGAAATGGAGGGAATGTATTTTTCTTTTNGTTT ] [+] EMBL AU174542 [ CGTTGATTTTATTTGNCAGGGGAAGGAG AT CCGAGAGGAAGAAGGGGGAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCTTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGAGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAAAAA ] [+] EMBL BI795232 [ AG AT CCGAGAGGAAGAA GGGGAATATAGATGCGATGGGGAAGTACGTGGGAGCTGCTCGGACATGGGGGGTGCGCATC CCGCG CGGGTTCCACTCCCAC TGGCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGGCTGC AGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCCAGACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGCATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTAaccaaaaaa ] [+] EMBL CF324526 [ GAATATAGAT CGATGGGGAAGTACGT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCTTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCG ] [+] EMBL BI794881 [ GT GGAGCTGCTC GACAT GGGGGTGCGCATCGCCGCG C GGTTCCACTCCCAC T GCCCGCAGACGGCGAGGATGTACTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGA CGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGCATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACC AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAAA ] [+] EMBL AU069786 [ gcGTTCCA TCCCA T GCCCGCAGACGGCGAGGATGTATTACCACCCG CCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGGCGGCGNCGGC TGCGCGGG TTCGCCGCGAAGAGGATGCCCCGG GCCGCCGCC GACA CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTCT AGACTCTCGATCCAGAC CTTCACGCGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAA ] [+] EMBL AU223392 [ CGTCCTCCTCCTGGTCNCCGTCTTCCTCCGCCGCCGCCGGTTNGGCCGNCGGCGGCGGCGGCGGC TGCGCGGGCTTCGCCGCGAAGAGGATGCCCCGG GCCCCCGCC GACN CCGCGGAGATCATCCTCTACG CCGTCGTCTAGAGT T AGCCTNT AGACTCTCGATCCAGACGCTTCACGCGGAAATGGA GGAATGTATTTTTCTTTT GTTTTTCTTTAAAGAGGAAAAAAAACA AAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATATTTAAAAAAA] consensusID : consensus_16494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [CATGGACTGAGGAGTAGAAATTTTCTTTAAAGAGGAAAAAAAACAAAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATATTTACGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGTTTCCCTTTTCTTAAAAAAGGGGAAATTCCGGGCCCAAAAAAAAAAATCCCCCTAAAGGGGAGGGTAAAAAAAATAAAGGGGCGGGTTTTAAAAAACTGGGAAAGGGAAAAAACCTGGGGTTACCAAAATAAAATCCTTTGAAAAAAAACCCCTTTTTCCAAAGGGGGGAAAAAAAA] [+] EMBL CF336696 [CATGGACTGAGGAGTAGAAATTTTCTTTAAAGAGGAAAAAAAACAAAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATATTTACGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGTTTCCCTTTTCTTAAAAAAGGGGAAATTCCGGGCCCAAAAAAAAAAATCCCCCTAAAGGGGAGGGTAAAAAAAATAAAGGGGCGGGTTTTAAAAAACTGGGAAAGGGAAAAAACCTGGGGTTACCAAAATAAAATCCTTTGAAAAAAAACCCCTTTTTCCAAAGGGGGGAAAAAAAA] consensusID : consensus_16494#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [CCTCCTGGTCGCCGTCTTCCTCCTCCGCCGCCGGTTTGTCCTACGGCGGCGGCGGCGGGCTGCGCGGGCTTNTCCGCGAAGAGGATGCCCCGGGCCGCCNCCGACACCGCGGAGATCATCCTNTNCGCCGTCGTCTAGAGTTAGCCTCTAGACTNTCGATCCAGACGCTTCNCGCGGAAATGGAGGAATGTATTTTTCTTTTGTTTTTCTTTAAAGAGGAAAAAAAACAAAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATATTTACGTGAAAAAAAA] [+] EMBL AU184174 [CCTCCTGGTCGCCGTCTTCCTCCTCCGCCGCCGGTTTGTCCTACGGCGGCGGCGGCGGGCTGCGCGGGCTTNTCCGCGAAGAGGATGCCCCGGGCCGCCNCCGACACCGCGGAGATCATCCTNTNCGCCGTCGTCTAGAGTTAGCCTCTAGACTNTCGATCCAGACGCTTCNCGCGGAAATGGAGGAATGTATTTTTCTTTTGTTTTTCTTTAAAGAGGAAAAAAAACAAAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATATTTACGTGAAAAAAAA] consensusID : consensus_16494#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [CCGCGTAGAGGATGCCCCGGACCGCCAGCCGACACCGCCGGAGAGTCATCCTCGTACGCCGTCGTCTTAGAGTTAGCCTCTAGACTCTCGATCCATGACGCTTCACGCGCAAACTGGCGGATATGCATCTTTTCATTTTGTTTTTCCTTTGATAAGACGGAGATAACAAACCACAGTGGACTTGTGAGATTGGTTGGTTTATTGACTGGAGATGAAATGCAATGAATGGAATGCACTTTGATATTTACGTGTTTTAAAAAAA] [+] EMBL BI796426 [CCGCGTAGAGGATGCCCCGGACCGCCAGCCGACACCGCCGGAGAGTCATCCTCGTACGCCGTCGTCTTAGAGTTAGCCTCTAGACTCTCGATCCATGACGCTTCACGCGCAAACTGGCGGATATGCATCTTTTCATTTTGTTTTTCCTTTGATAAGACGGAGATAACAAACCACAGTGGACTTGTGAGATTGGTTGGTTTATTGACTGGAGATGAAATGCAATGAATGGAATGCACTTTGATATTTACGTGTTTTAAAAAAA] consensusID : consensus_16494#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence [GGAAGGATGCCCCCGGGGCCCCCCCCCCGACCACCCCCGGGAGGATCAATCCCTTTACCCCCTTCGGTTCTTAAGAGTTTAGCCCTCTAGGACTCTCGATCCCAAGACGCTTTCACGCGGAAATGGAGGAATGCAATGTTTTCTTTTGTTTTTCTTTAAAGAGGAAAAAAAACCAAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAAAAAAA] [+] EMBL BI812401 [GGAAGGATGCCCCCGGGGCCCCCCCCCCGACCACCCCCGGGAGGATCAATCCCTTTACCCCCTTCGGTTCTTAAGAGTTTAGCCCTCTAGGACTCTCGATCCCAAGACGCTTTCACGCGGAAATGGAGGAATGCAATGTTTTCTTTTGTTTTTCTTTAAAGAGGAAAAAAAACCAAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGAAATGAATGGAATGATTTGATAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16494#0 CGCTTCTTCTTCCGCCTCCGCCTCCCATGGCAGCTCCCAGCTCGTGGGACACCTCCTTCC 60 consensus_16494#2 ------------------------------------------------------------ consensus_16494#3 ------------------------------------------------------------ consensus_16494#4 ------------------------------------------------------------ consensus_16494#1 ------------------------------------------------------------ consensus_16494#0 ACGAAGCAACCACAGCAAGGCAATAGCGCCACCCACCGCTCGCATCCACAGCTGCTGATT 120 consensus_16494#2 ------------------------------------------------------------ consensus_16494#3 ------------------------------------------------------------ consensus_16494#4 ------------------------------------------------------------ consensus_16494#1 ------------------------------------------------------------ consensus_16494#0 CGTAGGAGGAGCAGGCCAGGGAGGGATTCGTTGATTTTATTTGGCAGGGAAGGAGATCCG 180 consensus_16494#2 ------------------------------------------------------------ consensus_16494#3 ------------------------------------------------------------ consensus_16494#4 ------------------------------------------------------------ consensus_16494#1 ------------------------------------------------------------ consensus_16494#0 AGAGGAAGAAGGGGAATATAGATCGATGGGGAAGTACGTGGAGCTGCTCGACATGGGGGT 240 consensus_16494#2 ------------------------------------------------------------ consensus_16494#3 ------------------------------------------------------------ consensus_16494#4 ------------------------------------------------------------ consensus_16494#1 ------------------------------------------------------------ consensus_16494#0 GCGCATCGCCGCGCGGTTCCACTCCCACTGCCCGCAGACGGCGAGGATGTACTACCACCC 300 consensus_16494#2 ------------------------------------------------------------ consensus_16494#3 ------------------------------------------------------------ consensus_16494#4 ------------------------------------------------------------ consensus_16494#1 -------------------------------CATGGACTGAGGAGTAGAAATTTTCTTTA 29 consensus_16494#0 GCCGCCGTCCTCCTCCTCGTCGCCGTCTTCCTCCGCCGCCGCCGGTTCGGCCGACGGCGG 360 consensus_16494#2 -----------CCTCCTGGTCGCCGTCTTCCTCCTCCGCCGCCGGTTTGTCCTACGGCGG 49 consensus_16494#3 ------------------------------------------------------------ consensus_16494#4 ------------------------------------------------------------ consensus_16494#1 AAGAGGAAAAAAAACAAAGTGGACTTGGAGATTGGTTGGTTTATTGATGGAGTGAAATGA 89 consensus_16494#0 CGGCGGCGG-CTGCGCGGGCTTCGCCGCGAAGAGGATGCCCC---GGGCCGCC-GCCGAC 415 consensus_16494#2 CGGCGGCGGGCTGCGCGGGCTTNTCCGCGAAGAGGATGCCCC---GGGCCGCC-NCCGAC 105 consensus_16494#3 ------------------------CCGCGTAGAGGATGCCCC---GGACCGCCAGCCGAC 33 consensus_16494#4 -----------------------------GGAAGGATGCCCCCGGGGCCCCCCCCCCGAC 31 consensus_16494#1 AATGAATGGAATGATTTGATATTTACGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 149 * * * consensus_16494#0 -ACCGC--GGAGA-TCA-TCCTC-TACGCCGTCG---TCT--AGAGTTAG--CCTCTAG- 461 consensus_16494#2 -ACCGC--GGAGA-TCA-TCCTN-TNCGCCGTCG---TCT--AGAGTTAG--CCTCTAG- 151 consensus_16494#3 -ACCGCC-GGAGAGTCA-TCCTCGTACGCCGTCG---TCTT-AGAGTTAG--CCTCTAG- 83 consensus_16494#4 CACCCCCGGGAGGATCAATCCCTTTACCCCCTTCGGTTCTTAAGAGTTTAGCCCTCTAGG 91 consensus_16494#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 209 * * * * * * consensus_16494#0 ACTCTCGATCC-A-GACGCTT-CACGCGGAAA-TGGAGGA-ATGTATTTTTC---TTTTG 513 consensus_16494#2 ACTNTCGATCC-A-GACGCTT-CNCGCGGAAA-TGGAGGA-ATGTATTTTTC---TTTTG 203 consensus_16494#3 ACTCTCGATCC-ATGACGCTT-CACGCGCAAACTGGCGGATATGCATCTTTTCA-TTTTG 140 consensus_16494#4 ACTCTCGATCCCAAGACGCTTTCACGCGGAAA-TGGAGGA-ATGCAATGTTTTC-TTTTG 148 consensus_16494#1 AAAAAAAACCCCGGGTTTCCCTTTTCTTAAAAAAGGGGAAATTCCGGGCCCAAAAAAAAA 269 * * ** * * *** ** * * * consensus_16494#0 TTTTTCTTTAAAGAGGA-------AAAAAAACAAAGTGGA----CTTG-GAGATTGGTTG 561 consensus_16494#2 TTTTTCTTTAAAGAGGA-------AAAAAAACAAAGTGGA----CTTG-GAGATTGGTTG 251 consensus_16494#3 TTTTTCCTTTGATAAGACGGAGATAACAAACCACAGTGGA----CTTGTGAGATTGGTTG 196 consensus_16494#4 TTTTTCTTTAAAGAGGA-------AAAAAAACCAAGTGGA----CTTG-GAGATTGGTTG 196 consensus_16494#1 AATCCCCCTAAAGGGGAGGGTA--AAAAAAATAAAGGGGCGGGTTTTAAAAAACTGGGAA 327 * * * * ** ** *** ** ** ** * * *** consensus_16494#0 GTTTATTGA---TGGAG----TGAAATGAAATGAATGGAATGA--TTTGATAA------A 606 consensus_16494#2 GTTTATTGA---TGGAG----TGAAATGAAATGAATGGAATGA--TTTGATATTTACGTG 302 consensus_16494#3 GTTTATTGAC--TGGAGA---TGAAATGCAATGAATGGAATGCACTTTGATATTTACGTG 251 consensus_16494#4 GTTTATTGA---TGGAG----TGAAATGAAATGAATGGAATGA--TTTGATAAA------ 241 consensus_16494#1 AGGGAAAAAACCTGGGGTTACCAAAATAAAATCCTTTGAAAAAAAACCCCTTTTTCCAAA 387 * * *** * **** *** * *** * consensus_16494#0 A---AAAAAAA--- 614 consensus_16494#2 A---AAAAAAA--- 310 consensus_16494#3 TTTTAAAAAAA--- 262 consensus_16494#4 ----AAAAAAA--- 248 consensus_16494#1 GGGGGGAAAAAAAA 401 ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||