These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 828 fasta sequence [AAATTGTTAGTGAAGTAATTAATCAAGTAATTAAGTCTGCTTAATTAATCAACTACTACACAAAGAAAAAGATCGATGGCGTCTCCCGGCGTTGTGTGTACTACTGTAACGCCGACGTCGTCGGCCGGGTCGGACCAGGTCGTGGCCGGCGGCGGCGAGGCGGCGCGGCGGCCGGTGGCGCCGGCGGTGATGGAGGAGCGGAAGCGGAAGCGGAAGGAGTCGAACAGGCTGTCCGCGCAGCGGTCGCGGGCGCGGAAGCAGCAGCAGCTGGACGAGCTGGCCGGGCAGGTGGCGGCGCTGCGCGCCCGGAACGGCGCCCTGGGCCTCGCCGCGCGCGAGGCGGCGCGCCGGTGCGCCGCCGTGCGCGCCGAGAACGAGCTGCTCCGCGCGCGCTCCGTCGAGCTCGCCGCGCGCCTCGACTCCCTCACCGACCTGGCGCAGTGCCTGCACGACGCCGCCGCGGCCTCCTCCTTCGCCGCCGCGCCCCCGATGATGATGGCGGGCGCCGCCACCGCCTTCCCCACCGGCGCCGTCGGCGCCGCCGCCGGCTTCATGATGCCCCAGCTGCCGCCGCCGCTCCTCGACGCCACCACCATGGGCATGCATTGCAACTACTACTACTAGTCTACTATAGCTATAGCTAGCGTGTCAAGTCTTCATTAAGTTAGCTCTAGTAAGCTCTCTCTCTCTAGTCTCTCTACATGTGTCCAAAGTGTTTGTGCCTCTTCTTTTGTGTTGTTATTAGGTGACCTAATCAAAGGGCAAGAAGGACATTTCATGTGTGTATGAGACTTTATTATAAATGTGAAATGGACATCAAGGACAATT] [+] EMBL AK110526 [AAATTGTTAGTGAAGTAATTAATCAAGTAATTAAGTCTGCTTAATTAATCAACTACTACACAAAGAAAAAGATCGATGGCGTCTCCCGGCGTTGTGTGTACTACTGTAACGCCGACGTCGTCGGCCGGGTCGGACCAGGTCGTGGCCGGCGGCGGCGAGGCGGCGCGGCGGCCGGTGGCGCCGGCGGTGATGGAGGAGCGGAAGCGGAAGCGGAAGGAGTCGAACAGGCTGTCCGCGCAGCGGTCGCGGGCGCGGAAGCAGCAGCAGCTGGACGAGCTGGCCGGGCAGGTGGCGGCGCTGCGCGCCCGGAACGGCGCCCTGGGCCTCGCCGCGCGCGAGGCGGCGCGCCGGTGCGCCGCCGTGCGCGCCGAGAACGAGCTGCTCCGCGCGCGCTCCGTCGAGCTCGCCGCGCGCCTCGACTCCCTCACCGACCTGGCGCAGTGCCTGCACGACGCCGCCGCGGCCTCCTCCTTCGCCGCCGCGCCCCCGATGATGATGGCGGGCGCCGCCACCGCCTTCCCCACCGGCGCCGTCGGCGCCGCCGCCGGCTTCATGATGCCCCAGCTGCCGCCGCCGCTCCTCGACGCCACCACCATGGGCATGCATTGCAACTACTACTACTAGTCTACTATAGCTATAGCTAGCGTGTCAAGTCTTCATTAAGTTAGCTCTAGTAAGCTCTCTCTCTCTAGTCTCTCTACATGTGTCCAAAGTGTTTGTGCCTCTTCTTTTGTGTTGTTATTAGGTGACCTAATCAAAGGGCAAGAAGGACATTTCATGTGTGTATGAGACTTTATTATAAATGTGAAATGGACATCAAGGACAATT] consensusID : consensus_166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 106 fasta sequence [TTTTTTTTTTTTAACCACATAAAATTGTCCTTGATGTCCATTTCACATTTATAATAAAGTCTCATACACACATGAAATGTCCTTCTTGCCCTTTGTCTCGTCCTCT] [+] EMBL CA760903 [TTTTTTTTTTTTAACCACATAAAATTGTCCTTGATGTCCATTTCACATTTATAATAAAGTCTCATACACACATGAAATGTCCTTCTTGCCCTTTGTCTCGTCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_166#0 AAATTGTTAGTGAAGTAATTAATCAAGTAATTAAGTCTGCTTAATTAATCAACTACTACA 60 consensus_166#1 ------------------------------------------------------------ consensus_166#0 CAAAGAAAAAGATCGATGGCGTCTCCCGGCGTTGTGTGTACTACTGTAACGCCGACGTCG 120 consensus_166#1 ------------------------------------------------------------ consensus_166#0 TCGGCCGGGTCGGACCAGGTCGTGGCCGGCGGCGGCGAGGCGGCGCGGCGGCCGGTGGCG 180 consensus_166#1 ------------------------------------------------------------ consensus_166#0 CCGGCGGTGATGGAGGAGCGGAAGCGGAAGCGGAAGGAGTCGAACAGGCTGTCCGCGCAG 240 consensus_166#1 ------------------------------------------------------------ consensus_166#0 CGGTCGCGGGCGCGGAAGCAGCAGCAGCTGGACGAGCTGGCCGGGCAGGTGGCGGCGCTG 300 consensus_166#1 ------------------------------------------------------------ consensus_166#0 CGCGCCCGGAACGGCGCCCTGGGCCTCGCCGCGCGCGAGGCGGCGCGCCGGTGCGCCGCC 360 consensus_166#1 ------------------------------------------------------------ consensus_166#0 GTGCGCGCCGAGAACGAGCTGCTCCGCGCGCGCTCCGTCGAGCTCGCCGCGCGCCTCGAC 420 consensus_166#1 ------------------------------------------------------------ consensus_166#0 TCCCTCACCGACCTGGCGCAGTGCCTGCACGACGCCGCCGCGGCCTCCTCCTTCGCCGCC 480 consensus_166#1 ------------------------------------------------------------ consensus_166#0 GCGCCCCCGATGATGATGGCGGGCGCCGCCACCGCCTTCCCCACCGGCGCCGTCGGCGCC 540 consensus_166#1 ------------------------------------------------------------ consensus_166#0 GCCGCCGGCTTCATGATGCCCCAGCTGCCGCCGCCGCTCCTCGACGCCACCACCATGGGC 600 consensus_166#1 ------------------------------------------------------------ consensus_166#0 ATGCATTGCAACTACTACTACTAGTCTACTATAGCTATAGCTAGCGTGTCAAGTCTTCAT 660 consensus_166#1 -----------------------------TTTTTTTTTTTTAACCACATAAAATTGTCCT 31 * * * * * * * ** * ** * consensus_166#0 TAAGTTAGCTCTAGTAAGCTCTCTCTCTCTAGTCTCTCTACATGTGTCCAAAGTGTTTGT 720 consensus_166#1 TGATGT----CCATTTCACATTTATAATAAAGTCTCA-TACACACATGAAATGTCCTTCT 86 * * * * * * * * * ****** **** * ** ** ** * consensus_166#0 -GCCTCTTCTTTTGTGTTGTTATTAGGTGACCTAATCAAAGGGCAAGAAGGACATTTCAT 779 consensus_166#1 TGCCCTTTGTCTCGTCCTCT---------------------------------------- 106 *** ** * * ** * * consensus_166#0 GTGTGTATGAGACTTTATTATAAATGTGAAATGGACATCAAGGACAATT 828 consensus_166#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||