These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1429 fasta sequence [CCCCTTCCATCTCCTCTTCTCCCCGATCTCGCTGCTTCCAATCTCAGATCAACTCAAAGCTTTCCAAACGAATCCTCTGTTTCCTTCCAGAAACATCGACTTCTTGGGAGGTTTCTGATCGATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGGGGAGACACCGGTCACCGGCGACTGGGCTTGCCCTGACGGCGGGAACACGGAGGTCGCCGCGTTTCTTGACAAGGCGGGGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGTCTTCCGGGAGCCATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGCGGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGCGCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGCTCCTCTTCGCCGCCTCCGTGTCTGCGTCCGCGTCCGCCGCGGTGGTCTCGCCGCCCGCGGAGCAGCGCGCCGCCTGTTGCAGCCTTGCAGGAGGTGGTGGGTGCCGTCGTCCCTGTCGCTGGTCGCGTCCCTCGCGCTCTCGGCGGCCGTGCAGCTCCGGGTCTGCGCCGGGAGTGCGCACGGCGACACGCGCGCTGGCGCGGTGCGTGCAGGAGCTCCGGATGAAGGGCGCGGCGTTCGGCCTGTCCAAGGAGCCGCAGTACGGGGGTGACGAGGGCCAAGTGCGCCAGCGTCGAGGGCGCCGGTGCGTGGGGCCCGCTCTGGTGGTGCTACCAGAACATCGTCGCCGCCGCCACCATGTGCTCCGACAAGTTCATCTTGTGCTCGTAGGCCGGAGGCTAAGAGTTGAAATGGCATTGCCATCTGCTTCAAGCGAATCCGATTTCATGCATGTTTCAAAGAAGACAAGGTGCTCTCCAAGGTTGAACAAGGGCTCAGCTTCACCCCGACTTGACAAATCTAACACTGCTCATTCCAACAAGAAGACATGTGCAATAAAACCCACTGTACATCGCAATGGTCCTATGGGAAAATCAAAATGCGCTTGCAAAAAAGAGTTGAAACTAGACAATGAAAATGCGGACTACATGAAAGAATATCGTAGGGAGCTATGCAAAAGGTTGCTGTACCATTGCTTCAACGACTTACATCCAAAACGTCGTTTCTAAGCTTCAGAACCAATATGCTCATTTGGTTCAAGCAGTGTTGGATGTGTGCTTAGTCCATTTTTGTAGCCCCCTCCCTCCCTCTGCCCCAACCAACATATGTAACAAGTCAAGTTTCAGAACTGTGTATGTGGCTACTGTTTTTGTCTTAAACTGGAAGGTTGTGAAGGGCACAACAATCAAATGACATGAACTGTGTATGTGGCTACTGTTTTCATGTACATATATGTTGGTAAA] [+] EMBL AK110964 [CCCCTTCCATCTCCTCTTCTCCCCGATCTCGCTGCTTCCAATCTCAGATCAACTCAAAGCTTTCCAAACGAATCCTCTGTTTCCTTCCAGAAACATCGACTTCTTGGGAGGTTTCTGATCGATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGGGGAGACACCGGTCACCGGCGACTGGGCTTGCCCTGACGGCGGGAACACGGAGGTCGCCGCGTTTCTTGACAAGGCGGGGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGTCTTCCGGGAGCCATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGCGGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGCGCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGCTCCTCTTCGCCGCCTCCGTGTCTGCGTCCGCGTCCGCCGCGGTGGTCTCGCCGCCCGCGGAGCAGCGCGCCGCCTGTTGCAGCCTTGCAGGAGGTGGTGGGTGCCGTCGTCCCTGTCGCTGGTCGCGTCCCTCGCGCTCTCGGCGGCCGTGCAGCTCCGGGTCTGCGCCGGGAGTGCGCACGGCGACACGCGCGCTGGCGCGGTGCGTGCAGGAGCTCCGGATGAAGGGCGCGGCGTTCGGCCTGTCCAAGGAGCCGCAGTACGGGGGTGACGAGGGCCAAGTGCGCCAGCGTCGAGGGCGCCGGTGCGTGGGGCCCGCTCTGGTGGTGCTACCAGAACATCGTCGCCGCCGCCACCATGTGCTCCGACAAGTTCATCTTGTGCTCGTAGGCCGGAGGCTAAGAGTTGAAATGGCATTGCCATCTGCTTCAAGCGAATCCGATTTCATGCATGTTTCAAAGAAGACAAGGTGCTCTCCAAGGTTGAACAAGGGCTCAGCTTCACCCCGACTTGACAAATCTAACACTGCTCATTCCAACAAGAAGACATGTGCAATAAAACCCACTGTACATCGCAATGGTCCTATGGGAAAATCAAAATGCGCTTGCAAAAAAGAGTTGAAACTAGACAATGAAAATGCGGACTACATGAAAGAATATCGTAGGGAGCTATGCAAAAGGTTGCTGTACCATTGCTTCAACGACTTACATCCAAAACGTCGTTTCTAAGCTTCAGAACCAATATGCTCATTTGGTTCAAGCAGTGTTGGATGTGTGCTTAGTCCATTTTTGTAGCCCCCTCCCTCCCTCTGCCCCAACCAACATATGTAACAAGTCAAGTTTCAGAACTGTGTATGTGGCTACTGTTTTTGTCTTAAACTGGAAGGTTGTGAAGGGCACAACAATCAAATGACATGAACTGTGTATGTGGCTACTGTTTTCATGTACATATATGTTGGTAAA] consensusID : consensus_1694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence [CGCGGCTTCCAATCTCAGATCAACTCGAAGCTTTCCAAACGAATCCCCGCTTTCCTTCCAGAACCATCGCTTCTTGACTTCTTGGGAGCTTCTGGATTCTGATCTATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGTGGAGATCCCGGTCACCGGCGACGGGGCTTGTCCTGATGGCGGGAACGCGGAGGTCGCCGCGTTTCTTGACAAGGCGGCGGAGGCGGAGTCTTCCGGGAGCCATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGCGGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGCGCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGCTCCTCTTCGCCGCCTCCGTGTCCGCGTCCGCCGTCTCGCCGCCCGCGGAGCAGCGCGCCGCCTGTTGCAGCAGGTGGTGGGTGCCGTCGTCCCTGTCGCTGGTCGCGTCCCTCGCGCTCGCGGCGGCCGTGCAGCTCCGGGTCTGCGCCTACTGGCGCGCGTCGCGGCGGCTGCGCCGGGAGCGCGGCGACGCGCGCGCGCTGGCGCGGNGCGTGCAGGAGCTCCGGATGAAGGGTGCGGTGCACAACCTGTAGCAGGACTCCCAGACAGGGGTGACCAGGCCCATGTGTCGCACTTTTGCGGTCCCCTCGTCTTTTGACCCTCCAGCATCGGAANCNA] [+] EMBL CA756958 [CGCGGCTTCCAATCTCAGATCAACTCGAAGCTTTCCAAACGAATCCCCGCTTTCCTTCCAGAACCATCGCTTCTTGACTTCTTGGGAGCTTCTGGATTCTGATCTATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGTGGAGATCCCGGTCACCGGCGACGGGGCTTGTCCTGATGGCGGGAACGCGGAGGTCGCCGCGTTTCTTGACAAGGCGGCGGAGGCGGAGTCTTCCGGGAGCCATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGCGGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGCGCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGCTCCTCTTCGCCGCCTCCGTGTCCGCGTCCGCCGTCTCGCCGCCCGCGGAGCAGCGCGCCGCCTGTTGCAGCAGGTGGTGGGTGCCGTCGTCCCTGTCGCTGGTCGCGTCCCTCGCGCTCGCGGCGGCCGTGCAGCTCCGGGTCTGCGCCTACTGGCGCGCGTCGCGGCGGCTGCGCCGGGAGCGCGGCGACGCGCGCGCGCTGGCGCGGNGCGTGCAGGAGCTCCGGATGAAGGGTGCGGTGCACAACCTGTAGCAGGACTCCCAGACAGGGGTGACCAGGCCCATGTGTCGCACTTTTGCGGTCCCCTCGTCTTTTGACCCTCCAGCATCGGAANCNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1694#0 CCCCTTCCATCTCCTCTTCTCCCCGATCTCGCTGCTTCCAATCTCAGATCAACTCAAAGC 60 consensus_1694#1 -----------------------------CGCGGCTTCCAATCTCAGATCAACTCGAAGC 31 *** ********************** **** consensus_1694#0 TTTCCAAACGAATCCTCTGTTTCCTTCCAGAAACATCG-------ACTTCTTGGGAGGTT 113 consensus_1694#1 TTTCCAAACGAATCCCCGCTTTCCTTCCAGAACCATCGCTTCTTGACTTCTTGGGAGCTT 91 *************** * ************* ***** ************ ** consensus_1694#0 ------TCTGATCGATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGGGGAGACAC 167 consensus_1694#1 CTGGATTCTGATCTATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGTGGAGATCC 151 ******* ************************************* ***** * consensus_1694#0 CGGTCACCGGCGACTGGGCTTGCCCTGACGGCGGGAACACGGAGGTCGCCGCGTTTCTTG 227 consensus_1694#1 CGGTCACCGGCGACGGGGCTTGTCCTGATGGCGGGAACGCGGAGGTCGCCGCGTTTCTTG 211 ************** ******* ***** ********* ********************* consensus_1694#0 ACAAGGCGGGGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGTCTTCCGGGAGCC 287 consensus_1694#1 ACAAGGCGG---------------------------CGGAGGCGGAGTCTTCCGGGAGCC 244 ********* ************************ consensus_1694#0 ATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGC 347 consensus_1694#1 ATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGC 304 ************************************************************ consensus_1694#0 GGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGC 407 consensus_1694#1 GGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGC 364 ************************************************************ consensus_1694#0 GCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGC 467 consensus_1694#1 GCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGC 424 ************************************************************ consensus_1694#0 TCCTCTTCGCCGCCTCCGTGTCTGCGTCCGCGTCCGCCGCGGTGGTCTCGCCGCCCGCGG 527 consensus_1694#1 TCCTCTTCGCCGCCTCCGTGTCCGCGTCCGCC------------GTCTCGCCGCCCGCGG 472 ********************** ******** **************** consensus_1694#0 AGCAGCGCGCCGCCTGTTGCAGCCTTGCAGGAGGTGGTGGGTGCCGTCGTCCCTGTCGCT 587 consensus_1694#1 AGCAGCGCGCCGCCTGTTGCAGC--------AGGTGGTGGGTGCCGTCGTCCCTGTCGCT 524 *********************** ***************************** consensus_1694#0 GGTCGCGTCCCTCGCGCTCTCGGCGGCCGTGCAGCTCCGGGTCTGCGCC----------- 636 consensus_1694#1 GGTCGCGTCCCTCGCGCTCGCGGCGGCCGTGCAGCTCCGGGTCTGCGCCTACTGGCGCGC 584 ******************* ***************************** consensus_1694#0 ------GGGAGTGCGC-------ACGGCGACACGCGCGC--TGGCGCGGTGCGTGCAGGA 681 consensus_1694#1 GTCGCGGCGGCTGCGCCGGGAGCGCGGCGACGCGCGCGCGCTGGCGCGGNGCGTGCAGGA 644 * * ***** ******* ******* ******** ********** consensus_1694#0 GCTCCGGATGAAGGGCGCGGCGTTCGGCCTGTCCAAGGAGCCGCAGTACGGGGGTGACGA 741 consensus_1694#1 GCTCCGGATGAAGGGTGCGGTGCACAACCTGTAGCAGGACTCCCAG-ACAGGGGTGACCA 703 *************** **** * * ***** **** * *** ** ******** * consensus_1694#0 GGGCCAAGTGCGCCAGCGTCGAGGGCGCCGGTGCGTGGGGCCCGCTCTGGTGGTGCTACC 801 consensus_1694#1 GGCCCATGTGTCGCACTTTTGCGGTCCCCTCGTCTTTTGACC--CTCCAGCATCGGAANC 761 ** *** *** ** * * ** * ** * * * ** *** * * * * consensus_1694#0 AGAACATCGTCGCCGCCGCCACCATGTGCTCCGACAAGTTCATCTTGTGCTCGTAGGCCG 861 consensus_1694#1 NA---------------------------------------------------------- 763 consensus_1694#0 GAGGCTAAGAGTTGAAATGGCATTGCCATCTGCTTCAAGCGAATCCGATTTCATGCATGT 921 consensus_1694#1 ------------------------------------------------------------ consensus_1694#0 TTCAAAGAAGACAAGGTGCTCTCCAAGGTTGAACAAGGGCTCAGCTTCACCCCGACTTGA 981 consensus_1694#1 ------------------------------------------------------------ consensus_1694#0 CAAATCTAACACTGCTCATTCCAACAAGAAGACATGTGCAATAAAACCCACTGTACATCG 1041 consensus_1694#1 ------------------------------------------------------------ consensus_1694#0 CAATGGTCCTATGGGAAAATCAAAATGCGCTTGCAAAAAAGAGTTGAAACTAGACAATGA 1101 consensus_1694#1 ------------------------------------------------------------ consensus_1694#0 AAATGCGGACTACATGAAAGAATATCGTAGGGAGCTATGCAAAAGGTTGCTGTACCATTG 1161 consensus_1694#1 ------------------------------------------------------------ consensus_1694#0 CTTCAACGACTTACATCCAAAACGTCGTTTCTAAGCTTCAGAACCAATATGCTCATTTGG 1221 consensus_1694#1 ------------------------------------------------------------ consensus_1694#0 TTCAAGCAGTGTTGGATGTGTGCTTAGTCCATTTTTGTAGCCCCCTCCCTCCCTCTGCCC 1281 consensus_1694#1 ------------------------------------------------------------ consensus_1694#0 CAACCAACATATGTAACAAGTCAAGTTTCAGAACTGTGTATGTGGCTACTGTTTTTGTCT 1341 consensus_1694#1 ------------------------------------------------------------ consensus_1694#0 TAAACTGGAAGGTTGTGAAGGGCACAACAATCAAATGACATGAACTGTGTATGTGGCTAC 1401 consensus_1694#1 ------------------------------------------------------------ consensus_1694#0 TGTTTTCATGTACATATATGTTGGTAAA 1429 consensus_1694#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||