|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1699#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1674 fasta sequence
[CCGCCGCCGCCGCCGCCGTGCTCTCGCTCGCAGGGCGCATCGGCGAGCCGCCATGGCGGAGCGGAAGGAAGGGGAAGGGAAGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGCGGCGGCTGCGGGGGGCGCTGCGGAGCCTGCAGCAGGAGGCCGGGGTGCTGGAGCGGCTGGTGTACAAGCACCGGAACCAGCACCGCGGCGCCGCCTACTTCCAGTACCTCCTCAAGGTGAGGCGCGACGTGAGGCTGCTCCTCGCCGCCGGCCTCGGGGACGTCCTCACCGCCGTCTTCCCCGTCCTCGCCTCCCGCAAGCCGGCCAACACCATCCTCGCCGTCAACAGGCAGAGTAAGAAGAAGCCTGGTGCAAACCATTGTCACCATGAGAGGCTTTTGGGTGTCGCACGCTTGTTATCAGAGATGGCTGAACCTGTTATGATGGGAGCAGTTCAGATCTCGTTTTTACTTGCAAGATCATTTTTTGTTGATCTTTGCACAGCGATTCTTGCTTTGCTAGCAAGAGTGAGGGCTCTGGTTCAACAGATGCTACTTGATGTTGTCTCAGTTTACAACAAGGCTTCTGATCTTATTGATAGGAAGCAATCTGTTAAGATTAGTATTGGTGGAGCGCAGGCTTTCAGAGAGTACTATCCCTCAAGCAATGATGCCCGTACTTTTCTGGAATGTGTTTGGGTGAAAGATAAATTTGTTTTGCATGAAAATACAAAAGGTAACTGTGAGAAAACCCAAGCTGAGGATCAAAAGTCATGTGCTTCCGAATCAGCAGTCCTGTATGAAACTCTTGGACAAGTTTCTGAAGATATGGAAAATGCTGAAGGATTGAACTCTCCCATGAAGCTACCAGATGCCACCTTAGCAAACCAGCCAGAGAAAACCCATTGCCATCGTGATGAAGATTCTCAAAGTAGGAGGCAATTGGTGAATGACAACAATTCTAATTCTCTTTCAGATGCAGTTGCTACTCATGTGCATTCAACTCCATGCCCTGATGTCAAGCCTGAGACAAAGAAGAGAGTTGCATTCATTGCAGTTGGAAATCCGAAAGCCACTGCTAGTTCGATTGGAACAACTTTAACTAAGAAGCAGAGACTAGATGTGATTCCACGCGCCACTGCAGAACCTGAAGATCTATATGTCAAGCCTGAGACAAAGAAGAGAGTTGCATTCATCGCAGTAGGAAATCCGAAAGCCACTGCTAGTTCGAGTGGAACAACTTTAACTAAGAAGCAGAGACTAGAGGTGATTCCACGCGCCACTGCAGAACCTGAAGATCTATATGGCAAATTTTCTGAGGATACAGACAAGTCCATATTTTAGATTGTTTTGCACTGCAGCTGACCAGTGATCACTGAAATACTTCTCAGCTTTCTAACATGAAAAGAACAATCAATACAAAAGAGGGCTCGGTGTAGCTCAAGATATGGTTAAATTTTGAAGCAACTTTTGCTGTAGCATCTAGGAGGTTGCTTGGTTTATCTCGCTAAATCATTAGTATAGCCTTCATTGTATTCTGGGATGCAATATTATTTTGTCATCCATTTTTCAGGTGTAATTTTGCACAAAGATGAATTTTAGTTCGTCCCATCTGATGTTCAATGTAATATGCATTCATTCTTTGATTTGACGCTGACTGCATTACGTTTGTGGAGTGGCCT]
[+] EMBL AK099899 [CCGCCGCCGCCGCCGCCGTGCTCTCGCTCGCAGGGCGCATCGGCGAGCCGCCATGGCGGAGCGGAAGGAAGGGGAAGGGAAGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGCGGCGGCTGCGGGGGGCGCTGCGGAGCCTGCAGCAGGAGGCCGGGGTGCTGGAGCGGCTGGTGTACAAGCACCGGAACCAGCACCGCGGCGCCGCCTACTTCCAGTACCTCCTCAAGGTGAGGCGCGACGTGAGGCTGCTCCTCGCCGCCGGCCTCGGGGACGTCCTCACCGCCGTCTTCCCCGTCCTCGCCTCCCGCAAGCCGGCCAACACCATCCTCGCCGTCAACAGGCAGAGTAAGAAGAAGCCTGGTGCAAACCATTGTCACCATGAGAGGCTTTTGGGTGTCGCACGCTTGTTATCAGAGATGGCTGAACCTGTTATGATGGGAGCAGTTCAGATCTCGTTTTTACTTGCAAGATCATTTTTTGTTGATCTTTGCACAGCGATTCTTGCTTTGCTAGCAAGAGTGAGGGCTCTGGTTCAACAGATGCTACTTGATGTTGTCTCAGTTTACAACAAGGCTTCTGATCTTATTGATAGGAAGCAATCTGTTAAGATTAGTATTGGTGGAGCGCAGGCTTTCAGAGAGTACTATCCCTCAAGCAATGATGCCCGTACTTTTCTGGAATGTGTTTGGGTGAAAGATAAATTTGTTTTGCATGAAAATACAAAAGGTAACTGTGAGAAAACCCAAGCTGAGGATCAAAAGTCATGTGCTTCCGAATCAGCAGTCCTGTATGAAACTCTTGGACAAGTTTCTGAAGATATGGAAAATGCTGAAGGATTGAACTCTCCCATGAAGCTACCAGATGCCACCTTAGCAAACCAGCCAGAGAAAACCCATTGCCATCGTGATGAAGATTCTCAAAGTAGGAGGCAATTGGTGAATGACAACAATTCTAATTCTCTTTCAGATGCAGTTGCTACTCATGTGCATTCAACTCCATGCCCTGATGTCAAGCCTGAGACAAAGAAGAGAGTTGCATTCATTGCAGTTGGAAATCCGAAAGCCACTGCTAGTTCGATTGGAACAACTTTAACTAAGAAGCAGAGACTAGATGTGATTCCACGCGCCACTGCAGAACCTGAAGATCTATATGTCAAGCCTGAGACAAAGAAGAGAGTTGCATTCATCGCAGTAGGAAATCCGAAAGCCACTGCTAGTTCGAGTGGAACAACTTTAACTAAGAAGCAGAGACTAGAGGTGATTCCACGCGCCACTGCAGAACCTGAAGATCTATATGGCAAATTTTCTGAGGATACAGACAAGTCCATATTTTAGATTGTTTTGCACTGCAGCTGACCAGTGATCACTGAAATACTTCTCAGCTTTCTAACATGAAAAGAACAATCAATACAAAAGAGGGCTCGGTGTAGCTCAAGATATGGTTAAATTTTGAAGCAACTTTTGCTGTAGCATCTAGGAGGTTGCTTGGTTTATCTCGCTAAATCATTAGTATAGCCTTCATTGTATTCTGGGATGCAATATTATTTTGTCATCCATTTTTCAGGTGTAATTTTGCACAAAGATGAATTTTAGTTCGTCCCATCTGATGTTCAATGTAATATGCATTCATTCTTTGATTTGACGCTGACTGCATTACGTTTGTGGAGTGGCCT]
consensusID : consensus_1699#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence
[TCTATATGTCCAAGCCTGGAGCCACAAGAAGAGAGTCCATTCATCCCAGTAGGAAATCCGAAACCCCCTGCTAGTTCGAGTGGAACAACTTTAACTAAGAACACGAGACTAGAGGTGATTCCACGCCCACCTCAGAACCTGAAGATCTATATGCCAATTTTCTGAGGATACAGACACAGTCCATATTTTAGATTGTTTTGTACTGCAGCTGACCAGTGATCACTGAAATACTTCTCAGCTTTCTAACATGAAAAGAACCATCAATACCAAAGAGGGCTCGGTGTAGCTCAAGATATGGTTAAATTTTGAACCACTTTTGCTGTAGCATCTAGGAGGTTGCTTGGTTTATCTCGCTAAATCATTAGTATACCTTCACTTGTATTCTGGGATCAATATTATTTTGTCACCCATTTTTCAGGTGTAATTTTCCACAAGATGAATTTTAGTTCGTCCCATCTGATGTTCAATGTAATANCCATTCATTCTTTGATTTAAAAAAAAAA]
[+] EMBL BM038478 [TCTATATGTCCAAGCCTGGAGCCACAAGAAGAGAGTCCATTCATCCCAGTAGGAAATCCGAAACCCCCTGCTAGTTCGAGTGGAACAACTTTAACTAAGAACACGAGACTAGAGGTGATTCCACGCCCACCTCAGAACCTGAAGATCTATATGCCAATTTTCTGAGGATACAGACACAGTCCATATTTTAGATTGTTTTGTACTGCAGCTGACCAGTGATCACTGAAATACTTCTCAGCTTTCTAACATGAAAAGAACCATCAATACCAAAGAGGGCTCGGTGTAGCTCAAGATATGGTTAAATTTTGAACCACTTTTGCTGTAGCATCTAGGAGGTTGCTTGGTTTATCTCGCTAAATCATTAGTATACCTTCACTTGTATTCTGGGATCAATATTATTTTGTCACCCATTTTTCAGGTGTAATTTTCCACAAGATGAATTTTAGTTCGTCCCATCTGATGTTCAATGTAATANCCATTCATTCTTTGATTTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1699#0 CCGCCGCCGCCGCCGCCGTGCTCTCGCTCGCAGGGCGCATCGGCGAGCCGCCATGGCGGA 60
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 GCGGAAGGAAGGGGAAGGGAAGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGCGGCGGCT 120
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 GCGGGGGGCGCTGCGGAGCCTGCAGCAGGAGGCCGGGGTGCTGGAGCGGCTGGTGTACAA 180
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 GCACCGGAACCAGCACCGCGGCGCCGCCTACTTCCAGTACCTCCTCAAGGTGAGGCGCGA 240
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 CGTGAGGCTGCTCCTCGCCGCCGGCCTCGGGGACGTCCTCACCGCCGTCTTCCCCGTCCT 300
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 CGCCTCCCGCAAGCCGGCCAACACCATCCTCGCCGTCAACAGGCAGAGTAAGAAGAAGCC 360
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 TGGTGCAAACCATTGTCACCATGAGAGGCTTTTGGGTGTCGCACGCTTGTTATCAGAGAT 420
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 GGCTGAACCTGTTATGATGGGAGCAGTTCAGATCTCGTTTTTACTTGCAAGATCATTTTT 480
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 TGTTGATCTTTGCACAGCGATTCTTGCTTTGCTAGCAAGAGTGAGGGCTCTGGTTCAACA 540
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 GATGCTACTTGATGTTGTCTCAGTTTACAACAAGGCTTCTGATCTTATTGATAGGAAGCA 600
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 ATCTGTTAAGATTAGTATTGGTGGAGCGCAGGCTTTCAGAGAGTACTATCCCTCAAGCAA 660
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 TGATGCCCGTACTTTTCTGGAATGTGTTTGGGTGAAAGATAAATTTGTTTTGCATGAAAA 720
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 TACAAAAGGTAACTGTGAGAAAACCCAAGCTGAGGATCAAAAGTCATGTGCTTCCGAATC 780
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 AGCAGTCCTGTATGAAACTCTTGGACAAGTTTCTGAAGATATGGAAAATGCTGAAGGATT 840
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 GAACTCTCCCATGAAGCTACCAGATGCCACCTTAGCAAACCAGCCAGAGAAAACCCATTG 900
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 CCATCGTGATGAAGATTCTCAAAGTAGGAGGCAATTGGTGAATGACAACAATTCTAATTC 960
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 TCTTTCAGATGCAGTTGCTACTCATGTGCATTCAACTCCATGCCCTGATGTCAAGCCTGA 1020
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 GACAAAGAAGAGAGTTGCATTCATTGCAGTTGGAAATCCGAAAGCCACTGCTAGTTCGAT 1080
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 TGGAACAACTTTAACTAAGAAGCAGAGACTAGATGTGATTCCACGCGCCACTGCAGAACC 1140
consensus_1699#1 ------------------------------------------------------------
consensus_1699#0 TGAAGATCTATATGTC-AAGCCTGAGACAA--AGAAGAGAGTTGCATTCATCGCAGTAGG 1197
consensus_1699#1 ------TCTATATGTCCAAGCCTGGAGCCACAAGAAGAGAGTC-CATTCATCCCAGTAGG 53
********** ******* * * ********** ******** *******
consensus_1699#0 AAATCCGAAAGCCACTGCTAGTTCGAGTGGAACAACTTTAACTAAGAAGCAGAGACTAGA 1257
consensus_1699#1 AAATCCGAAACCCCCTGCTAGTTCGAGTGGAACAACTTTAACTAAGAACACGAGACTAGA 113
********** ** ********************************** *********
consensus_1699#0 GGTGATTCCACGCGCCACTGCAGAACCTGAAGATCTATATGGCAAATTTTCTGAGGATAC 1317
consensus_1699#1 GGTGATTCCACGC-CCACCTCAGAACCTGAAGATCTATATGCCAA-TTTTCTGAGGATAC 171
************* **** ********************* *** **************
consensus_1699#0 AGACA-AGTCCATATTTTAGATTGTTTTGCACTGCAGCTGACCAGTGATCACTGAAATAC 1376
consensus_1699#1 AGACACAGTCCATATTTTAGATTGTTTTGTACTGCAGCTGACCAGTGATCACTGAAATAC 231
***** *********************** ******************************
consensus_1699#0 TTCTCAGCTTTCTAACATGAAAAGAACAATCAATACAAAAGAGGGCTCGGTGTAGCTCAA 1436
consensus_1699#1 TTCTCAGCTTTCTAACATGAAAAGAACCATCAATACCAAAGAGGGCTCGGTGTAGCTCAA 291
*************************** ******** ***********************
consensus_1699#0 GATATGGTTAAATTTTGAAGCAACTTTTGCTGTAGCATCTAGGAGGTTGCTTGGTTTATC 1496
consensus_1699#1 GATATGGTTAAATTTTGAACCA-CTTTTGCTGTAGCATCTAGGAGGTTGCTTGGTTTATC 350
******************* ** *************************************
consensus_1699#0 TCGCTAAATCATTAGTATAGCCTTCATTGTATTCTGGGATGCAATATTATTTTGTCATCC 1556
consensus_1699#1 TCGCTAAATCATTAGTATACCTTCACTTGTATTCTGGGAT-CAATATTATTTTGTCACCC 409
******************* * * ************** **************** **
consensus_1699#0 ATTTTTCAGGTGTAATTTTGCACAAAGATGAATTTTAGTTCGTCCCATCTGATGTTCAAT 1616
consensus_1699#1 ATTTTTCAGGTGTAATTTTCCACAA-GATGAATTTTAGTTCGTCCCATCTGATGTTCAAT 468
******************* ***** **********************************
consensus_1699#0 GTAATATGCATTCATTCTTTGATTTGACGCTGACTGCATTACGTTTGTGGAGTGGCCT 1674
consensus_1699#1 GTAATANCCATTCATTCTTTGATTTAAAAAAAAAA----------------------- 503
****** ***************** * *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||