These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1433 fasta sequence [CACTCGCAGCCATTCTGCTTTGCTTTGCTGCTTCTTCCTCCTCCCTCCCTGCTTCTTTGCTTTCTTGCTAATTTGCAGGTAACTAGAGGTAGTACAGTTTAGCAAGCTCAAAGCTGAGAGAGAGAGAGGGGTTATAATCTGTCATGGAGTACGAGAGGATACACAAAGTTCAGATGGGAGTGATGTCTCCAACCAAGCTGAGGATGAAGCTGCTGGGATCCCATGGCGGCAGCATCGGCAGGGTTGACGAGGCAAAGAAGTCGCCGCGAGCGTCGCCGGCGAGGCTCGACGCCGACGAGGACGACGACGACCACCCCAAGAACAGCCTCCTGCCCCAAGAACTCGACGAAGATTATCCCAAGGACCAGTCGGATTCTTCTCGCTCGCGCTCCGACGCGAGCCATGGGAGAGCTGGCAATGGCTACGACAGCGGCGGCTTCGAGTTCTACAGGGAGGAGAGGCCGCCGCCACCGCCGCCGGCGGCGGTGGCGGTGGTCGGCGGGACGTTCTTCAGGCAGGTGCCGTCAAAGTGGAACGACGCCGAGAAGTGGCTCGCCGGGAGACACGTCGTGCACTCCAACCCAATCTTCTCCAAGAAGGCCGCCGCCGCAGCAGCGGCCGTGTCCGGCCGCGTTGCGCCGGAGGCCTCGGCGTCGTCGTCGCCGCCGTCGGTGGCGAGCAGGCAGCGCCAGCAGAAGAGGCTCCGCGTGTCGTCGGAGGCGGCGGCGGTGTCGATGCGGGACGTGGGGACGGAGATGACGCCGATGGCGAGCAAGGAGCAGTCGCGGAGCGGCACGCCCGCCGGCGCCGCCACGCCGTCGCTGAGTCCGCTCTGCTCGGTGCCGACGAGCCCGAGGGGCGCCGCGTCCGCGTCGTCGGCGTCGTCGGAGCGGGAGCTCCAGATCAGGACGCGCCGCGAGATCGCCGCGCTCGGGCTGCAGCTGGGCAAGATGAACATCGCGTCGTGGGCCAGCAAGGACGACGACGACGAGCTCCCCCGCGCCTCGCCGGAGAAGAGACCGAGACCGAGACCGAGACCTCACTCCGGCGACGGCGGCGGCGAGGCCAAGAAGAGGGAGTTCGAGGCGCGCGCCATGGCGTGGCAGGAGACGCACAAGTGCAAGCTCGCGTTGAGGTTTCAGAGGAAGGAGGTGAAGATTCAGGAATGGGAGAGCTGCCAGAAGGCCAAATTCGAAGCCAAGATGAGGCACGCAGAGGTGCAGGCAGAGCAGATGAAGGCGAGGGCGAAGCAGAAGCTGAGCAGGAGGCTGTCGGCGTTGAGCCACAAGGCGGAGGGGAAGCAGGCGAGGGTGGAGGCTCGCCGGAGCCGGCAGGCGGCGCGGCTGGCCCGCCAGGTGCACCGCATCCGGGAGACCGGCGCCGCGCCGTCGCGCCTCCGCCGCTGCTGCAGCTGGCTGTTCCTCTGAACATCT] [+] EMBL AK111002 [CACTCGCAGCCATTCTGCTTTGCTTTGCTGCTTCTTCCTCCTCCCTCCCTGCTTCTTTGCTTTCTTGCTAATTTGCAGGTAACTAGAGGTAGTACAGTTTAGCAAGCTCAAAGCTGAGAGAGAGAGAGGGGTTATAATCTGTCATGGAGTACGAGAGGATACACAAAGTTCAGATGGGAGTGATGTCTCCAACCAAGCTGAGGATGAAGCTGCTGGGATCCCATGGCGGCAGCATCGGCAGGGTTGACGAGGCAAAGAAGTCGCCGCGAGCGTCGCCGGCGAGGCTCGACGCCGACGAGGACGACGACGACCACCCCAAGAACAGCCTCCTGCCCCAAGAACTCGACGAAGATTATCCCAAGGACCAGTCGGATTCTTCTCGCTCGCGCTCCGACGCGAGCCATGGGAGAGCTGGCAATGGCTACGACAGCGGCGGCTTCGAGTTCTACAGGGAGGAGAGGCCGCCGCCACCGCCGCCGGCGGCGGTGGCGGTGGTCGGCGGGACGTTCTTCAGGCAGGTGCCGTCAAAGTGGAACGACGCCGAGAAGTGGCTCGCCGGGAGACACGTCGTGCACTCCAACCCAATCTTCTCCAAGAAGGCCGCCGCCGCAGCAGCGGCCGTGTCCGGCCGCGTTGCGCCGGAGGCCTCGGCGTCGTCGTCGCCGCCGTCGGTGGCGAGCAGGCAGCGCCAGCAGAAGAGGCTCCGCGTGTCGTCGGAGGCGGCGGCGGTGTCGATGCGGGACGTGGGGACGGAGATGACGCCGATGGCGAGCAAGGAGCAGTCGCGGAGCGGCACGCCCGCCGGCGCCGCCACGCCGTCGCTGAGTCCGCTCTGCTCGGTGCCGACGAGCCCGAGGGGCGCCGCGTCCGCGTCGTCGGCGTCGTCGGAGCGGGAGCTCCAGATCAGGACGCGCCGCGAGATCGCCGCGCTCGGGCTGCAGCTGGGCAAGATGAACATCGCGTCGTGGGCCAGCAAGGACGACGACGACGAGCTCCCCCGCGCCTCGCCGGAGAAGAGACCGAGACCGAGACCGAGACCTCACTCCGGCGACGGCGGCGGCGAGGCCAAGAAGAGGGAGTTCGAGGCGCGCGCCATGGCGTGGCAGGAGACGCACAAGTGCAAGCTCGCGTTGAGGTTTCAGAGGAAGGAGGTGAAGATTCAGGAATGGGAGAGCTGCCAGAAGGCCAAATTCGAAGCCAAGATGAGGCACGCAGAGGTGCAGGCAGAGCAGATGAAGGCGAGGGCGAAGCAGAAGCTGAGCAGGAGGCTGTCGGCGTTGAGCCACAAGGCGGAGGGGAAGCAGGCGAGGGTGGAGGCTCGCCGGAGCCGGCAGGCGGCGCGGCTGGCCCGCCAGGTGCACCGCATCCGGGAGACCGGCGCCGCGCCGTCGCGCCTCCGCCGCTGCTGCAGCTGGCTGTTCCTCTGAACATCT] consensusID : consensus_1700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence [TGGCTGCTCTATTCAAAGCTGTGGCTGCTCTCCAATGGCAACTGCAGTATGAGCAATGGGAGTGATGTCTCCAACCAAGCTGAGGATGAAGCTGCTGGGATCCCATGGCGGCAGATCGGCAGGGTTGACGAGGCAAAGAAGTCGCCGCGAGCGTCGCCGGCGAGGCTCGACGCCGACGAGGACGACGACGACCACCCCAAGAACAGCCTCCTGCCCCAAGAACTCGACGAAGATTATCCCAAGGACCAGTCGGATTCTTCTCGTTCGCGCTCCGACGCGANCCATGGGAGAGCTGGCAATGGCTACGACAGCGGCGGTTTCGAGTTCTACAA] [+] EMBL C72537 [TGGCTGCTCTATTCAAAGCTGTGGCTGCTCTCCAATGGCAACTGCAGTATGAGCAATGGGAGTGATGTCTCCAACCAAGCTGAGGATGAAGCTGCTGGGATCCCATGGCGGCAGATCGGCAGGGTTGACGAGGCAAAGAAGTCGCCGCGAGCGTCGCCGGCGAGGCTCGACGCCGACGAGGACGACGACGACCACCCCAAGAACAGCCTCCTGCCCCAAGAACTCGACGAAGATTATCCCAAGGACCAGTCGGATTCTTCTCGTTCGCGCTCCGACGCGANCCATGGGAGAGCTGGCAATGGCTACGACAGCGGCGGTTTCGAGTTCTACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1700#0 CACTCGCAGCCATTCTGCTTTGCTTTGCTGCTTCTTCCTCCTCCCTCCCTGCTTCTTTGC 60 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 TTTCTTGCTAATTTGCAGGTAACTAGAGGTAGTACAGTTTAGCAAGCTCAAAGCTGAGAG 120 consensus_1700#1 --------------------------------------------------TGGCTGCTCT 10 **** consensus_1700#0 AGAGAGAGGGGTTATAATCTGTCATGGAGTACGAGAGGATACACAAAGTTCAGATGGGAG 180 consensus_1700#1 ATTCAAAGCTGTGGCTGCTCTCCAATGGCAACTGCAGTATGAGCAA--------TGGGAG 62 * * ** ** ** * ** ** ** *** ****** consensus_1700#0 TGATGTCTCCAACCAAGCTGAGGATGAAGCTGCTGGGATCCCATGGCGGCAGCATCGGCA 240 consensus_1700#1 TGATGTCTCCAACCAAGCTGAGGATGAAGCTGCTGGGATCCCATGGCGGCAG-ATCGGCA 121 **************************************************** ******* consensus_1700#0 GGGTTGACGAGGCAAAGAAGTCGCCGCGAGCGTCGCCGGCGAGGCTCGACGCCGACGAGG 300 consensus_1700#1 GGGTTGACGAGGCAAAGAAGTCGCCGCGAGCGTCGCCGGCGAGGCTCGACGCCGACGAGG 181 ************************************************************ consensus_1700#0 ACGACGACGACCACCCCAAGAACAGCCTCCTGCCCCAAGAACTCGACGAAGATTATCCCA 360 consensus_1700#1 ACGACGACGACCACCCCAAGAACAGCCTCCTGCCCCAAGAACTCGACGAAGATTATCCCA 241 ************************************************************ consensus_1700#0 AGGACCAGTCGGATTCTTCTCGCTCGCGCTCCGACGCGAGCCATGGGAGAGCTGGCAATG 420 consensus_1700#1 AGGACCAGTCGGATTCTTCTCGTTCGCGCTCCGACGCGANCCATGGGAGAGCTGGCAATG 301 ********************** **************** ******************** consensus_1700#0 GCTACGACAGCGGCGGCTTCGAGTTCTACAGGGAGGAGAGGCCGCCGCCACCGCCGCCGG 480 consensus_1700#1 GCTACGACAGCGGCGGTTTCGAGTTCTACAA----------------------------- 332 **************** ************* consensus_1700#0 CGGCGGTGGCGGTGGTCGGCGGGACGTTCTTCAGGCAGGTGCCGTCAAAGTGGAACGACG 540 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 CCGAGAAGTGGCTCGCCGGGAGACACGTCGTGCACTCCAACCCAATCTTCTCCAAGAAGG 600 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 CCGCCGCCGCAGCAGCGGCCGTGTCCGGCCGCGTTGCGCCGGAGGCCTCGGCGTCGTCGT 660 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 CGCCGCCGTCGGTGGCGAGCAGGCAGCGCCAGCAGAAGAGGCTCCGCGTGTCGTCGGAGG 720 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 CGGCGGCGGTGTCGATGCGGGACGTGGGGACGGAGATGACGCCGATGGCGAGCAAGGAGC 780 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 AGTCGCGGAGCGGCACGCCCGCCGGCGCCGCCACGCCGTCGCTGAGTCCGCTCTGCTCGG 840 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 TGCCGACGAGCCCGAGGGGCGCCGCGTCCGCGTCGTCGGCGTCGTCGGAGCGGGAGCTCC 900 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 AGATCAGGACGCGCCGCGAGATCGCCGCGCTCGGGCTGCAGCTGGGCAAGATGAACATCG 960 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 CGTCGTGGGCCAGCAAGGACGACGACGACGAGCTCCCCCGCGCCTCGCCGGAGAAGAGAC 1020 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 CGAGACCGAGACCGAGACCTCACTCCGGCGACGGCGGCGGCGAGGCCAAGAAGAGGGAGT 1080 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 TCGAGGCGCGCGCCATGGCGTGGCAGGAGACGCACAAGTGCAAGCTCGCGTTGAGGTTTC 1140 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 AGAGGAAGGAGGTGAAGATTCAGGAATGGGAGAGCTGCCAGAAGGCCAAATTCGAAGCCA 1200 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 AGATGAGGCACGCAGAGGTGCAGGCAGAGCAGATGAAGGCGAGGGCGAAGCAGAAGCTGA 1260 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 GCAGGAGGCTGTCGGCGTTGAGCCACAAGGCGGAGGGGAAGCAGGCGAGGGTGGAGGCTC 1320 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 GCCGGAGCCGGCAGGCGGCGCGGCTGGCCCGCCAGGTGCACCGCATCCGGGAGACCGGCG 1380 consensus_1700#1 ------------------------------------------------------------ consensus_1700#0 CCGCGCCGTCGCGCCTCCGCCGCTGCTGCAGCTGGCTGTTCCTCTGAACATCT 1433 consensus_1700#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||