These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1160 fasta sequence [CTAGAGCAAATAACTCATATCCGTAGAGCAAATAACTCATATTCCTAGAGTTTATCATTGGTGTAAGCTTCAATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATAATGCCATGAATTTGTCAAGCGTTCAAACCCACTGAAATGTTGTGTGAAGGTAAATATTTCAAAGTGTTCATGAAGAAAAGGCAGGTAAATATTTCGTTACTTCCCCGTGACATGCTAAGCCAGAAACAATCTCGCTGCATGTGATATGCTCAGCCAGAAACAGAAACAAAAGAGAAAAAGAGAGTTTCTTCCCAGCTTTTTTCATGTGTTGTCTGGTTAGAGCCTACTCGTTGAGTGCCTATAAAAGGAACGTTACGAACGAAAGAAGCAGACTCAAGAATAGTATATCATTGGTGTAAGCTTCAATAGGTTAGTGTACTTTGCGAATTCACAGGCCCTATATTGTGGTATGAACTGAGTACGCGATGATTTATGGTGCATATTGGGGGCTTACCATAAGATAATGCCATGAATTCGCAAAGTGTTCAAACCCACTAAAGTGTTATGTAAAGGTAAATATTTGTAAGTATTCGGGATGGAAAGGCAGGTAAATATTTAAAGTTTATTAATTTAGAAATGTAGCTGAGACATTAGAAAGTTTTAACACACAACATTACATATTAGTTTGAATGAGCAAAATATAAAAGCGTTCTACTCATTAGCCTCATCATCGAAATTTCGTGACGTGTTAGTGTCCTTTTTCTTTCCCTTTCTTCTAGCACCGGTTGGAGGTCTGCATCCTGACAAAGATAATCTTTTAGGTGAATGTCGCTCGCGGACAGACCTACGGACCACCTCAACACCGCTGAGATCAACGTGGCCGTAGTTTTGGGTCGCTGAGTTACTGGTGGCGATTCATCAAGCTGTGACGGTCCTATCTCGTGTTGTGCTGTTGACGACCCCCCACCGTAGCTATATGGTTCTCCGTAGGACTATGTGCTGCCAGCATATCCCATCATTTGTTCAGGGTTGTACATTCCTACAAAACATTGAATGCAAAGTTGTAGCGTACACACATAATGGAAATAAAATATTTTGTAGTAAATTATA] [+] EMBL AK102950 [CTAGAGCAAATAACTCATATCCGTAGAGCAAATAACTCATATTCCTAGAGTTTATCATTGGTGTAAGCTTCAATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATAATGCCATGAATTTGTCAAGCGTTCAAACCCACTGAAATGTTGTGTGAAGGTAAATATTTCAAAGTGTTCATGAAGAAAAGGCAGGTAAATATTTCGTTACTTCCCCGTGACATGCTAAGCCAGAAACAATCTCGCTGCATGTGATATGCTCAGCCAGAAACAGAAACAAAAGAGAAAAAGAGAGTTTCTTCCCAGCTTTTTTCATGTGTTGTCTGGTTAGAGCCTACTCGTTGAGTGCCTATAAAAGGAACGTTACGAACGAAAGAAGCAGACTCAAGAATAGTATATCATTGGTGTAAGCTTCAATAGGTTAGTGTACTTTGCGAATTCACAGGCCCTATATTGTGGTATGAACTGAGTACGCGATGATTTATGGTGCATATTGGGGGCTTACCATAAGATAATGCCATGAATTCGCAAAGTGTTCAAACCCACTAAAGTGTTATGTAAAGGTAAATATTTGTAAGTATTCGGGATGGAAAGGCAGGTAAATATTTAAAGTTTATTAATTTAGAAATGTAGCTGAGACATTAGAAAGTTTTAACACACAACATTACATATTAGTTTGAATGAGCAAAATATAAAAGCGTTCTACTCATTAGCCTCATCATCGAAATTTCGTGACGTGTTAGTGTCCTTTTTCTTTCCCTTTCTTCTAGCACCGGTTGGAGGTCTGCATCCTGACAAAGATAATCTTTTAGGTGAATGTCGCTCGCGGACAGACCTACGGACCACCTCAACACCGCTGAGATCAACGTGGCCGTAGTTTTGGGTCGCTGAGTTACTGGTGGCGATTCATCAAGCTGTGACGGTCCTATCTCGTGTTGTGCTGTTGACGACCCCCCACCGTAGCTATATGGTTCTCCGTAGGACTATGTGCTGCCAGCATATCCCATCATTTGTTCAGGGTTGTACATTCCTACAAAACATTGAATGCAAAGTTGTAGCGTACACACATAATGGAAATAAAATATTTTGTAGTAAATTATA] consensusID : consensus_173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [ATATTGTGGTATGAACCTAGGTCCCCGATTATTTATTGGTGCCTATTGGGGGCCTTACCATAAAATTAATGCCATGAATTCGCAAAGGGTTCCAACCCCCCTAAAGTGTTATGTAAAGGTAAATATTTGTAAGTTATTCTTGATGGAAAGGCAGGTAAATATTTCAAGTTTATTTATTTAGAAATGTAGCTGAGCCCTTAAAAAGTTTTTACCCCCACCACTTCCATATTAGTTCGAATGAGCAAAATATAAAAGCGTTTTACTCATTAGCCTCATCATCGAAATTTCGTGACGTGTTAGTGTCCTTTTTCTTTCCCTTTTTTCTAGCCCCGGTTGGAGGTTTGCATCCTGCCAAAAATAATTTTTTAGGTGAATGGCGCCCCCGGACAGACCTATGGACCCCCTCAACCCCCCTGAGATCAACGTGGCCGTAGTTTTGGGTCCCTGAGTTACTGGTGGCGATTCATCAGGCTGTGACGGTCCTATGTTGTGTTGTGCTGTTGACGACCCCCCCCCGTAGCTATATGGTTTTCCGTAGGACTATGTGCTACCGGCATATCCCATCATTTGTTCAGGGTTGTCCCTTCCTCCAAAACCTTGAATGTAAAGTTGTAGCGTCCCCCCATAATGGAAATAAAATTTTTTGTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760885 [ATATTGTGGTATGAACCTAGGTCCCCGATTATTTATTGGTGCCTATTGGGGGCCTTACCATAAAATTAATGCCATGAATTCGCAAAGGGTTCCAACCCCCCTAAAGTGTTATGTAAAGGTAAATATTTGTAAGTTATTCTTGATGGAAAGGCAGGTAAATATTTCAAGTTTATTTATTTAGAAATGTAGCTGAGCCCTTAAAAAGTTTTTACCCCCACCACTTCCATATTAGTTCGAATGAGCAAAATATAAAAGCGTTTTACTCATTAGCCTCATCATCGAAATTTCGTGACGTGTTAGTGTCCTTTTTCTTTCCCTTTTTTCTAGCCCCGGTTGGAGGTTTGCATCCTGCCAAAAATAATTTTTTAGGTGAATGGCGCCCCCGGACAGACCTATGGACCCCCTCAACCCCCCTGAGATCAACGTGGCCGTAGTTTTGGGTCCCTGAGTTACTGGTGGCGATTCATCAGGCTGTGACGGTCCTATGTTGTGTTGTGCTGTTGACGACCCCCCCCCGTAGCTATATGGTTTTCCGTAGGACTATGTGCTACCGGCATATCCCATCATTTGTTCAGGGTTGTCCCTTCCTCCAAAACCTTGAATGTAAAGTTGTAGCGTCCCCCCATAATGGAAATAAAATTTTTTGTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_173#0 CTAGAGCAAATAACTCATATCCGTAGAGCAAATAACTCATATTCCTAGAGTTTATCATTG 60 consensus_173#1 ------------------------------------------------------------ consensus_173#0 GTGTAAGCTTCAATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGA 120 consensus_173#1 ------------------------------------------------------------ consensus_173#0 ACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATAATGCCATGAA 180 consensus_173#1 ------------------------------------------------------------ consensus_173#0 TTTGTCAAGCGTTCAAACCCACTGAAATGTTGTGTGAAGGTAAATATTTCAAAGTGTTCA 240 consensus_173#1 ------------------------------------------------------------ consensus_173#0 TGAAGAAAAGGCAGGTAAATATTTCGTTACTTCCCCGTGACATGCTAAGCCAGAAACAAT 300 consensus_173#1 ------------------------------------------------------------ consensus_173#0 CTCGCTGCATGTGATATGCTCAGCCAGAAACAGAAACAAAAGAGAAAAAGAGAGTTTCTT 360 consensus_173#1 ------------------------------------------------------------ consensus_173#0 CCCAGCTTTTTTCATGTGTTGTCTGGTTAGAGCCTACTCGTTGAGTGCCTATAAAAGGAA 420 consensus_173#1 ------------------------------------------------------------ consensus_173#0 CGTTACGAACGAAAGAAGCAGACTCAAGAATAGTATATCATTGGTGTAAGCTTCAATAGG 480 consensus_173#1 ------------------------------------------------------------ consensus_173#0 TTAGTGTACTTTGCGAATTCACAGGCCCTATATTGTGGTATGAAC-TGAGTACGCGATGA 539 consensus_173#1 -----------------------------ATATTGTGGTATGAACCTAGGTCCCCGATTA 31 **************** * ** * **** * consensus_173#0 TTTAT-GGTGCATATTGGGGGC-TTACCATAAGAT-AATGCCATGAATTCGCAAAGTGTT 596 consensus_173#1 TTTATTGGTGCCTATTGGGGGCCTTACCATAAAATTAATGCCATGAATTCGCAAAGGGTT 91 ***** ***** ********** ********* ** ******************** *** consensus_173#0 CAAACCCAC-TAAAGTGTTATGTAAAGGTAAATATTTGTAAGT-ATTCGGGATGGAAAGG 654 consensus_173#1 CCAACCCCCCTAAAGTGTTATGTAAAGGTAAATATTTGTAAGTTATTCTTGATGGAAAGG 151 * ***** * ********************************* **** ********** consensus_173#0 CAGGTAAATATTTAAAGTTTATTAATTTAGAAATGTAGCTGAGACATTAGAAAGTTTTAA 714 consensus_173#1 CAGGTAAATATTTCAAGTTTATTTATTTAGAAATGTAGCTGAGCCCTTAAAAAGTTTTTA 211 ************* ********* ******************* * *** ******** * consensus_173#0 CACACAACA-TTACATATTAGTTTGAATGAGCAAAATATAAAAGCGTTCTACTCATTAGC 773 consensus_173#1 CCCCCACCACTTCCATATTAGTTCGAATGAGCAAAATATAAAAGCGTTTTACTCATTAGC 271 * * ** ** ** ********** ************************ *********** consensus_173#0 CTCATCATCGAAATTTCGTGACGTGTTAGTGTCCTTTTTCTTTCCCTTTCTTCTAGCACC 833 consensus_173#1 CTCATCATCGAAATTTCGTGACGTGTTAGTGTCCTTTTTCTTTCCCTTTTTTCTAGCCCC 331 ************************************************* ******* ** consensus_173#0 GGTTGGAGGTCTGCATCCTGACAAAGATAATCTTTTAGGTGAATGTCGCTCGCGGACAGA 893 consensus_173#1 GGTTGGAGGTTTGCATCCTGCCAAAAATAATTTTTTAGGTGAATGGCGCCCCCGGACAGA 391 ********** ********* **** ***** ************* *** * ******** consensus_173#0 CCTACGGACCACCTCAACACCGCTGAGATCAACGTGGCCGTAGTTTTGGGTCGCTGAGTT 953 consensus_173#1 CCTATGGACCCCCTCAACCCCCCTGAGATCAACGTGGCCGTAGTTTTGGGTCCCTGAGTT 451 **** ***** ******* ** ****************************** ******* consensus_173#0 ACTGGTGGCGATTCATCAAGCTGTGACGGTCCTATCTCGTGTTGTGCTGTTGACGACCCC 1013 consensus_173#1 ACTGGTGGCGATTCATCAGGCTGTGACGGTCCTATGTTGTGTTGTGCTGTTGACGACCCC 511 ****************** **************** * ********************** consensus_173#0 CCACCGTAGCTATATGGTTCTCCGTAGGACTATGTGCTGCCAGCATATCCCATCATTTGT 1073 consensus_173#1 CCCCCGTAGCTATATGGTTTTCCGTAGGACTATGTGCTACCGGCATATCCCATCATTTGT 571 ** **************** ****************** ** ****************** consensus_173#0 TCAGGGTTGTACATTCCTACAAAACATTGAATGCAAAGTTGTAGCGTACACACATAATGG 1133 consensus_173#1 TCAGGGTTGTCCCTTCCTCCAAAACCTTGAATGTAAAGTTGTAGCGTCCCCCCATAATGG 631 ********** * ***** ****** ******* ************* * * ******** consensus_173#0 AAATAAAATATTTTGTAGTAAATTATA--------------------- 1160 consensus_173#1 AAATAAAATTTTTTGTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 679 ********* ************ * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||