These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CGCCTCCAACACCGCTGGTTGCAGTCGCCTCCACTGCTGCCCAGTACCGCTGTCACATCGGCCAACGGGGAGGCCTAGGCCTCCAGATCTAGCGACCCCATCCTTCCCGCTAGTGGAACTAGCTAGATAGAGCGGGCCGAGTACAAGCGACGACGATGAGGGAGAGGGTGGCTGCGCGGGGAAGGGGCCGGCGCGGCGCAGGGAAGGAGGTGGTGGCAACAGCACCGGGAAGGGATTGGCGGTGGCTCACGACGGTAGAGGTGCGGGAGAGGGTGCGGCGAGGAGGGGATCCACTGATGCCGGGCCTCGGGAGCGGTGCTGGGAAGGGGCAGCAGGGACTCTCGGGGTTAGCGCCACGGGGGAGGGGACGACAGGGAACGGATCCGGTGCCGACGAGCCTTGGGTGAGTGGATCTGGCGCCACCGAGCCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGACAGAGGGAGCAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCTTACCTCGTGTTTCGTGATGTGATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTATGCTCTGTGATATGAATTTGATCTTGATCGAACC] [+] EMBL AK062425 [CGCCTCCAACACCGCTGGTTGCAGTCGCCTCCACTGCTGCCCAGTACCGCTGTCACATCGGCCAACGGGGAGGCCTAGGCCTCCAGATCTAGCGACCCCATCCTTCCCGCTAGTGGAACTAGCTAGATAGAGCGGGCCGAGTACAAGCGACGACGATGAGGGAGAGGGTGGCTGCGCGGGGAAGGGGCCGGCGCGGCGCAGGGAAGGAGGTGGTGGCAACAGCACCGGGAAGGGATTGGCGGTGGCTCACGACGGTAGAGGTGCGGGAGAGGGTGCGGCGAGGAGGGGATCCACTGATGCCGGGCCTCGGGAGCGGTGCTGGGAAGGGGCAGCAGGGACTCTCGGGGTTAGCGCCACGGGGGAGGGGACGACAGGGAACGGATCCGGTGCCGACGAGCCTTGGGTGAGTGGATCTGGCGCCACCGAGCCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGACAGAGGGAGCAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCTTACCTCGTGTTTCGTGATGTGATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTATGCTCTGTGATATGAATTTGATCTTGATCGAACC] consensusID : consensus_1735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [CCTCGAGTCTCTCCCTCCTCCCTCGGTCCCTCTGATTCCCTCCTCTTTCTATCTCTCTCCCACTCTTCTCCCTCCTCCCTTCTCTCTCCACCGTCGCCAGTTGTTGTCGCCTCCAACACCGCTGGTTGCAGTCGCCTCCACTGCTGCCCAGTACCGCTGTCACATCGGCCAACGGGGAGGCCTAGGCCTCCAGATCTAGCGACCCCATCCTTCCCGCTAGTGGAACTAGCTAGATAGAGCGGGCCGAGTACAAGCGACGACGATGAGGGAGAGGGTGGCTGCGCGGGGAAGGGGCCGGCGCGGCGCAGGGAAGGAGGTGGTGCCGACGAGCCTTGGGTGAGTGGATCTGGCGCCACCGAGCCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGACAGAGGGAGCAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCTTACCTCGTGTTTCGTGATGTGATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTATGCTCTGTGATATGAATTTG] [+] EMBL AK063091 [CCTCGAGTCTCTCCCTCCTCCCTCGGTCCCTCTGATTCCCTCCTCTTTCTATCTCTCTCCCACTCTTCTCCCTCCTCCCTTCTCTCTCCACCGTCGCCAGTTGTTGTCGCCTCCAACACCGCTGGTTGCAGTCGCCTCCACTGCTGCCCAGTACCGCTGTCACATCGGCCAACGGGGAGGCCTAGGCCTCCAGATCTAGCGACCCCATCCTTCCCGCTAGTGGAACTAGCTAGATAGAGCGGGCCGAGTACAAGCGACGACGATGAGGGAGAGGGTGGCTGCGCGGGGAAGGGGCCGGCGCGGCGCAGGGAAGGAGGTGGTGCCGACGAGCCTTGGGTGAGTGGATCTGGCGCCACCGAGCCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGACAGAGGGAGCAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCTTACCTCGTGTTTCGTGATGTGATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTATGCTCTGTGATATGAATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1735#0 CGCCTCCAACACCGCTGGTTGCAGTCGCCTCCACTGCTGCCCAGTACCGCTGTCACATCG 60 consensus_1735#1 -----------------CCTCGAGTCTCTCCCTCCTCC-CTCGGTCCCTCTG--ATTCCC 40 * **** * ** * * * * ** ** *** * * consensus_1735#0 GCCAACGGGGAGGCCTAGGCCTCCAGATCTAGCGACCCCATCCTTCCCGCTAGTGGAACT 120 consensus_1735#1 TCCTCTTTCTATCTCT----CTCCCACTCTTCTCCCTCCTCCCTTCTCTCT--CCACCGT 94 ** * ** **** *** * ** ***** * ** * consensus_1735#0 AGCTAGATAGAGCGGGCCGAGTACAAGCGACGACGATGAGGGAGAGGGTGGCTGCGCGGG 180 consensus_1735#1 CGCCAGTTGTTGTCGCCT--CCAACACCGCTGGTTGCAGTCGCCTCCACTGCTGCCCAGT 152 ** ** * * * * * * ** * * ***** * * consensus_1735#0 GAAGGGGCCGGCGCGGCGCAGGGAAGGAGGTGGTGGCAACAGCACCGGGAAGGGATTGGC 240 consensus_1735#1 ACCGCTGTCACATCGGCCAACGG--GGAGGCCTAGGCCTCCAGATCT---AGCGACC--C 205 * * * **** * ** ***** *** * * * ** ** * consensus_1735#0 GGTGGCTCACGACGGTAGAGGT-GCGGGAGAGGGTGCGGCGAGGAGGGGATCCACTGATG 299 consensus_1735#1 CATCCTTCCCGCTAGTGGAACTAGCTAGATAGAGCGGGCCGAGTACAAGCGACGACGATG 265 * ** ** ** ** * ** ** ** * * * **** * * * **** consensus_1735#0 CCGGGCCTCGGGAGCGGTGCTGGGAAGGGGCAGCAGGGACTCTCGGGGTTAGCGCCACGG 359 consensus_1735#1 A-GGGAGAGGGTGGCTGCGCGGGGAAGGGGC---------------------CGGCGCGG 303 *** ** ** * ** ********** ** * *** consensus_1735#0 GGGAGGGGACGACAGGGAACGGATCCGGTGCCGACGAGCCTTGGGTGAGTGGATCTGGCG 419 consensus_1735#1 CGCAGGGAA-----------GGAGGTGGTGCCGACGAGCCTTGGGTGAGTGGATCTGGCG 352 * **** * *** ********************************** consensus_1735#0 CCACCGAGCCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGAC 479 consensus_1735#1 CCACCGAGCCTCAGGAGCAGAGCGGGGAAGGGGGTGACGGCGGCACTTGGCGGCAGCGAC 412 ************************************************************ consensus_1735#0 AGAGGGAGCAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCT 539 consensus_1735#1 AGAGGGAGCAAATCTGGCACCGACCATTCACACCCTTCCTCGGGAGCACAAATCCTTCCT 472 ************************************************************ consensus_1735#0 TACCTCGTGTTTCGTGATGTGATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTA 599 consensus_1735#1 TACCTCGTGTTTCGTGATGTGATGTGAATTTTTTGTGCTTGATCTGTGATGTGGAATTTA 532 ************************************************************ consensus_1735#0 TGCTCTGTGATATGAATTTGATCTTGATCGAACC 633 consensus_1735#1 TGCTCTGTGATATGAATTTG-------------- 552 ******************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||