These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [AACGTAATCGATTTGTCTCATCATCACGACGAANAGCTCGTAAACGTTATTTCAATGCACCATCACACGTTCGTCGTCGTTTAATGAGCGCACCATTAAATAAAGAATTACGACGACGATACAATGTTCGTAGTTTACCAGTTCGTAAAGATGATGAAGTGGCGATTACTCGTGGCCATTTCAAAGGTCAACCATCCGGTAAAATCACACAAGTTTACCAAAAAAAATTCGTCATTCATGTCGAACGAATTACACGTGAAAAAGCCAATGGTAATACTGTTCATATTGGTATCCATCCGTCGAAGGTTCAAATAACCGAATTGAAATTAGATCGTGATCGTAAACGTATTTTGGATCGTCGTTCGAAATCGAAATTGGCTGCGTAAGGCTAACATACCGAAGAAAGGATTCAACAAGCACCAATTGGAAACCTCCTGCTTAATCTTAGAGAAAGAAACAACATACGGAAGGAAAAACATGAAGCAAAATTCTATTCCAAGGTGTTGTGGTTTTCGTTTTGGTTTTGAGATTGCTTGTGGGCATGGGCGGTAAACCAGAGAACGAAAACAAGTCGTTACAGCTNTGGCACCAACGGAATGAGGACAGGAAGGATCAAGTA] [+] EMBL CA755110 [AACGTAATCGATTTGTCTCATCATCACGACGAANAGCTCGTAAACGTTATTTCAATGCACCATCACACGTTCGTCGTCGTTTAATGAGCGCACCATTAAATAAAGAATTACGACGACGATACAATGTTCGTAGTTTACCAGTTCGTAAAGATGATGAAGTGGCGATTACTCGTGGCCATTTCAAAGGTCAACCATCCGGTAAAATCACACAAGTTTACCAAAAAAAATTCGTCATTCATGTCGAACGAATTACACGTGAAAAAGCCAATGGTAATACTGTTCATATTGGTATCCATCCGTCGAAGGTTCAAATAACCGAATTGAAATTAGATCGTGATCGTAAACGTATTTTGGATCGTCGTTCGAAATCGAAATTGGCTGCGTAAGGCTAACATACCGAAGAAAGGATTCAACAAGCACCAATTGGAAACCTCCTGCTTAATCTTAGAGAAAGAAACAACATACGGAAGGAAAAACATGAAGCAAAATTCTATTCCAAGGTGTTGTGGTTTTCGTTTTGGTTTTGAGATTGCTTGTGGGCATGGGCGGTAAACCAGAGAACGAAAACAAGTCGTTACAGCTNTGGCACCAACGGAATGAGGACAGGAAGGATCAAGTA] consensusID : consensus_1758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [TAGCAACCNCGGCTGCAGGAATGCGGCACGAGCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGCTCTCTCTCTCTCTCTCTCACACAGAAGAAAATGAGACAAAATCGATTTGTCTCATCATCACGTCGAAAAGCTCGTAAACGTTATTTTATGCACCATCGCATATTCGTCGTCGTTTAATGAGCGCACCATTGAATAAAGAACTACGACGACGATACAATGTTCGTAGTTTACCTATTCGAAAAGATGATGAAGTTGCGATCACTCGTGGCCATTTCAGAGGGCAACCATCAGGCAAAATTACACAAGTTTACCGTAAGAAATATGTCATTCATGTTGGACGTATAACACGTGAAAAAGCCAATGGAAATACCGTTCACATTGGTATTCATCCATCGAAGGTGCAAATTACCAAAATCAAATTAGATCGTAATCGTCGTCAAATTCTCGAACGTCGTGCAAAATCGAAACTATTCCGGCAAAGGCAAACATACCGAAGAAAGCATTCAACAAGCACCAATGGAAACTCAGCTTATAAGAAACAAGAACAGCCCCAATGGTATA] [+] EMBL BE039195 [TAGCAACCNCGGCTGCAGGAATGCGGCACGAGCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGCTCTCTCTCTCTCTCTCTCACACAGAAGAAAATGAGACAAAATCGATTTGTCTCATCATCACGTCGAAAAGCTCGTAAACGTTATTTTATGCACCATCGCATATTCGTCGTCGTTTAATGAGCGCACCATTGAATAAAGAACTACGACGACGATACAATGTTCGTAGTTTACCTATTCGAAAAGATGATGAAGTTGCGATCACTCGTGGCCATTTCAGAGGGCAACCATCAGGCAAAATTACACAAGTTTACCGTAAGAAATATGTCATTCATGTTGGACGTATAACACGTGAAAAAGCCAATGGAAATACCGTTCACATTGGTATTCATCCATCGAAGGTGCAAATTACCAAAATCAAATTAGATCGTAATCGTCGTCAAATTCTCGAACGTCGTGCAAAATCGAAACTATTCCGGCAAAGGCAAACATACCGAAGAAAGCATTCAACAAGCACCAATGGAAACTCAGCTTATAAGAAACAAGAACAGCCCCAATGGTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1758#0 ------------------------------------------------------------ consensus_1758#1 TAGCAACCNCGGCTGCAGGAATGCGGCACGAGCTCTCTCTTCTCTCTCTCTCTCTCTCTC 60 consensus_1758#0 -------------------------------------------------------AACGT 5 consensus_1758#1 TCTCTCTCTCTCTGTGTGTGCTCTCTCTCTCTCTCTCTCACACAGAAGAAAATGAGACAA 120 ** consensus_1758#0 AATCGATTTGTCTCATCATCACGACGAANAGCTCGTAAACGTTATTTCAATGCACCATCA 65 consensus_1758#1 AATCGATTTGTCTCATCATCACGTCGAAAAGCTCGTAAACGTTATTTTA-TGCACCATCG 179 *********************** **** ****************** * ********* consensus_1758#0 CACGTTCGTCGTCGTTTAATGAGCGCACCATTAAATAAAGAATTACGACGACGATACAAT 125 consensus_1758#1 CATATTCGTCGTCGTTTAATGAGCGCACCATTGAATAAAGAACTACGACGACGATACAAT 239 ** **************************** ********* ***************** consensus_1758#0 GTTCGTAGTTTACCAGTTCGTAAAGATGATGAAGTGGCGATTACTCGTGGCCATTTCAAA 185 consensus_1758#1 GTTCGTAGTTTACCTATTCGAAAAGATGATGAAGTTGCGATCACTCGTGGCCATTTCAGA 299 ************** **** ************** ***** **************** * consensus_1758#0 GGTCAACCATCCGGTAAAATCACACAAGTTTACCAAAAAAAATTCGTCATTCATGTCGAA 245 consensus_1758#1 GGGCAACCATCAGGCAAAATTACACAAGTTTACCGTAAGAAATATGTCATTCATGTTGGA 359 ** ******** ** ***** ************* ** **** *********** * * consensus_1758#0 CGAATTACACGTGAAAAAGCCAATGGTAATACTGTTCATATTGGTATCCATCCGTCGAAG 305 consensus_1758#1 CGTATAACACGTGAAAAAGCCAATGGAAATACCGTTCACATTGGTATTCATCCATCGAAG 419 ** ** ******************** ***** ***** ******** ***** ****** consensus_1758#0 GTTCAAATAACCGAATTGAAATTAGATCGTGATCGTAAACGTATTTTGGATCGTCGTTCG 365 consensus_1758#1 GTGCAAATTACCAAAATCAAATTAGATCGTAATCGTCGTCAAATTCTCGAACGTCGTGCA 479 ** ***** *** ** * ************ ***** * *** * ** ****** * consensus_1758#0 AAATCGAAATTGGCTGCGTAA-GGCTAACATACCGAAGAAAGGATTCAACAAGCACCAAT 424 consensus_1758#1 AAATCGAAACTATTCCGGCAAAGGCAAACATACCGAAGAAAGCATTCAACAAGCACCAAT 539 ********* * * ** *** **************** ***************** consensus_1758#0 TGGAAACCTCCTGCTTAATCTTAGAGAAAGAAACAACATACGGAAGGAAAAACATGAAGC 484 consensus_1758#1 -GGAAACT--CAGCTTA---TAAGAAACAAGAACAGCC--CCAATGGTATA--------- 582 ****** * ***** * *** * * **** * * * ** * * consensus_1758#0 AAAATTCTATTCCAAGGTGTTGTGGTTTTCGTTTTGGTTTTGAGATTGCTTGTGGGCATG 544 consensus_1758#1 ------------------------------------------------------------ consensus_1758#0 GGCGGTAAACCAGAGAACGAAAACAAGTCGTTACAGCTNTGGCACCAACGGAATGAGGAC 604 consensus_1758#1 ------------------------------------------------------------ consensus_1758#0 AGGAAGGATCAAGTA 619 consensus_1758#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||