These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 782 fasta sequence [AGGAGGCAATCGGTGTGCTGAAGAAGATGTCCGAGAAGGGAGTGGCGCCGGATGTTGTGACATATAACACACTGATCAAGGGGCTCTCGGATGTGCTCGAGATGGATGAAGCAATGTGGTTGCTTGAGGAGATGGTTCGAGGTGAGAATATAGTTAAGCCTAATGTGGTGACATTCAACTCGGTTATACAGGGCCTTTGTGATATTGGTAGGATGAGGCAAGCGTTCCAAGTCCGTGCGATGATGGAAGAGACTGGGTGTATGGTTAACTTGGTGACATACAATCTGCTGATTGGTGGACTCCTTAGAGTCCACAAGGTAAGGAAGGCTATGGAGCTGATGGATGAGATGACTTGTCTAGGGCTGGAGCCTGATTCATTCACCTATAGTATACTGATAAAGGGTTCCTGCAAAATGTGGCAAGTTGACCGTGCAGAAGATCTTTTATCTACAATGAGAGATCGTGGGATAGAACCTGAGCTATTTCACTATATTCCTTTGCTTGTAGCCATGTGTGAACAGGGTATGATGGAACGAGCGAGGAATTTGTTCAATGAAATGGACAACAACTTTCCACTAGATGTGGTTGCATATAGCACTATGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAAACTGCGAAAGAGTTGCTTAAGAGCATGGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATATGTTTGCTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGTGGCTTT] [+] EMBL CB618725 [AGGAGGCAATCGGTGTGCTGAAGAAGATGTCCGAGAAGGGAGTGGCGCCGGATGTTGTGACATATAACACACTGATCAAGGGGCTCTCGGATGTGCTCGAGATGGATGAAGCAATGTGGTTGCTTGAGGAGATGGTTCGAGGTGAGAATATAGTTAAGCCTAATGTGGTGACATTCAACTCGGTTATACAGGGCCTTTGTGATATTGGTAGGATGAGGCAAGCGTTCCAAGTCCGTGCGATGATGGAAGAGACTGGGTGTATGGTTAACTTGGTGACATACAATCTGCTGATTGGTGGACTCCTTAGAGTCCACAAGGTAAGGAAGGCTATGGAGCTGATGGATGAGATGACTTGTCTAGGGCTGGAGCCTGATTCATTCACCTATAGTATACTGATAAAGGGTTCCTGCAAAATGTGGCAAGTTGACCGTGCAGAAGATCTTTTATCTACAATGAGAGATCGTGGGATAGAACCTGAGCTATTTCACTATATTCCTTTGCTTGTAGCCATGTGTGAACAGGGTATGATGGAACGAGCGAGGAATTTGTTCAATGAAATGGACAACAACTTTCCACTAGATGTGGTTGCATATAGCACTATGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAAACTGCGAAAGAGTTGCTTAAGAGCATGGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATATGTTTGCTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGTGGCTTT] consensusID : consensus_1768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [GGGGNGGGGGATCCNTNGGTCCNACAAGTAAGGAAGCTTTGGAGTTGTTGGATGANGAGATTNTTTAGGGTGGGCCCGATTCATTCACCTATAGTATACNATAAAGGGTTTNTGCCAAATGNGGCAAGTGACCGTGCAGANATNTTTTNTNTACAATGAGAGATCGTGGGATAGNACCTGAGCTATTTCACTATATTCCTTTGCTTGTANCCATGTGTGNACAGGGTATGATGGAACGAGCGAGGAATTTGTTCAATGAAATGGACAACAACTTTCCCACTAGATGTGGTTGCATATAGCACTATGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAAACTGCAAAAGAGTTGCTTAAGAGCATAGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATATGTTTGCTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGTGGCTTTTTGCCTGACGTTGCCGTATTTGATTCACTGATCCAAGGTTATAGCACAAAAGGAGAGAT] [+] EMBL AA753639 [GGGGNGGGGGATCCNTNGGTCCNACAAGTAAGGAAGCTTTGGAGTTGTTGGATGANGAGATTNTTTAGGGTGGGCCCGATTCATTCACCTATAGTATACNATAAAGGGTTTNTGCCAAATGNGGCAAGTGACCGTGCAGANATNTTTTNTNTACAATGAGAGATCGTGGGATAGNACCTGAGCTATTTCACTATATTCCTTTGCTTGTANCCATGTGTGNACAGGGTATGATGGAACGAGCGAGGAATTTGTTCAATGAAATGGACAACAACTTTCCCACTAGATGTGGTTGCATATAGCACTATGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAAACTGCAAAAGAGTTGCTTAAGAGCATAGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATATGTTTGCTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGTGGCTTTTTGCCTGACGTTGCCGTATTTGATTCACTGATCCAAGGTTATAGCACAAAAGGAGAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1768#0 AGGAGGCAATCGGTGTGCTGAAGAAGATGTCCGAGAAGGGAGTGGCGCCGGATGTTGTGA 60 consensus_1768#1 ------------------------------------------------------------ consensus_1768#0 CATATAACACACTGATCAAGGGGCTCTCGGATGTGCTCGAGATGGATGAAGCAATGTGGT 120 consensus_1768#1 ------------------------------------------------------------ consensus_1768#0 TGCTTGAGGAGATGGTTCGAGGTGAGAATATAGTTAAGCCTAATGTGGTGACATTCAACT 180 consensus_1768#1 ------------------------------------------------------------ consensus_1768#0 CGGTTATACAGGGCCTTTGTGATATTGGTAGGATGAGGCAAGCGTTCCAAGTCCGTGCGA 240 consensus_1768#1 ------------------------------------------------------------ consensus_1768#0 TGATGGAAGAGACTGGGTGTATGGTTAACTTGGTGACATACAATCTGCTGATTGGTGGAC 300 consensus_1768#1 -------------------------------------------------GGGGNGGGGGA 11 * * ** consensus_1768#0 TCCTTAGAGTCCACAAGGTAAGGAAGGCTATGGAGCTGATGGATGAGATGACTTGTCTAG 360 consensus_1768#1 TCCNTNGGTCCNACAAG-TAAGGAAG-CTTTGGAGTTGTTGGATGANGAGA-TTNTTTAG 68 *** * * * ***** ******** ** ***** ** ******* ** ** * *** consensus_1768#0 GGCTGGAGCCTGATTCATTCACCTATAGTATACTGATAAAGGGTTCCTGCAAAATGTGGC 420 consensus_1768#1 GGT--GGGCCCGATTCATTCACCTATAGTATACN-ATAAAGGGTTTNTGCCAAATGNGGC 125 ** * *** ********************** ********** *** ***** *** consensus_1768#0 AAGTTGACCGTGCAGAAGATCTTTTATCTACAATGAGAGATCGTGGGATAGAACCTGAGC 480 consensus_1768#1 AAGT-GACCGTGCAGAN-ATNTTTTNTNTACAATGAGAGATCGTGGGATAGNACCTGAGC 183 **** *********** ** **** * *********************** ******** consensus_1768#0 TATTTCACTATATTCCTTTGCTTGTAGCCATGTGTGAACAGGGTATGATGGAACGAGCGA 540 consensus_1768#1 TATTTCACTATATTCCTTTGCTTGTANCCATGTGTGNACAGGGTATGATGGAACGAGCGA 243 ************************** ********* *********************** consensus_1768#0 GGAATTTGTTCAATGAAATGGACAACAACTTTCC-ACTAGATGTGGTTGCATATAGCACT 599 consensus_1768#1 GGAATTTGTTCAATGAAATGGACAACAACTTTCCCACTAGATGTGGTTGCATATAGCACT 303 ********************************** ************************* consensus_1768#0 ATGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAAACTGCGAAAGAGTTGCTTAAGAGC 659 consensus_1768#1 ATGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAAACTGCAAAAGAGTTGCTTAAGAGC 363 ***************************************** ****************** consensus_1768#0 ATGGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATATGTTT 719 consensus_1768#1 ATAGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATATGTTT 423 ** ********************************************************* consensus_1768#0 GCTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGTGGC 779 consensus_1768#1 GCTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGTGGC 483 ************************************************************ consensus_1768#0 TTT--------------------------------------------------------- 782 consensus_1768#1 TTTTTGCCTGACGTTGCCGTATTTGATTCACTGATCCAAGGTTATAGCACAAAAGGAGAG 543 *** consensus_1768#0 -- consensus_1768#1 AT 545 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||