These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1462 fasta sequence [CGTGCGTTCACCCCCCTAACAACTATCTCACCCCCCTAACAACTATCTCACCGGCTCGATCAATCTCTCACCGGAGATGGTGCCCGTCCGGCCGTCCGCGGCGGCGCTGCTGCTCGCCGCCACCGCTTTCCTCGTCGTCGCGGTGGGCGCCCAGCCGCTGAGCCCGGACAGCCCCATCCTGAGGGACCCCAACGTGATCCCCATCTACATGACCCCCGGCTCGTCGCCCACCGTGGCGAGCTGCTACAACCAGAACAACACGGCGTCGGGCCCCGACTGCACGGTCGAGCCGCGCGCGTGCCCGCGCGGCTGCCGCGACATGTGCTACGTTCACTGCCCCACCTGCAAGCTCGTCTGCCTGTGTGAGCTGACCGGCACGGAGTGCTACGACCCGCGGTTCGTCGGCGGCGACGGCAACAAGTTCCTGTTCCACGGGCGCAAGGACGCCGACTTCTGCCTGCTCTCCGACGCCAACCTGCACATCAACGCGCACTTCATCGGCAAGCGCAACGCGGCGGCGGCACGGGACTTCACCTGGGTGCAGGCCCTCGGCATCCGCTTCGGCGGCCACCGCCTCTACCTCGGCGTCAGGAGGACCGTCAGGTGGGACGCCGCCGTCGACCGCCTCGTGATCACCTTCGACGGCGCGCCCGTCGAGCTGGACGCCGTCCCCGCCGCCAGCTGGAGCCCAGCCTCCGTTCCGGCGCTCTCGGTCTTCCGCACCGGCCCGGCCAACGGCGTGGTGGTGCGCCTCGACGGCCGGTTCCGCATCGTCGCCAACGCGGTGCCCGTCACGGAGGAGGACTCGAGGATCCACGGCTACGGCCTCACCGCCGACGACAGCCTCGCCCACCTCAATGTGGCGTTCAAGTTCTACTCCATCAGCGCCGACGTGCACGGCGTGCTGGGCCAGACCTACCGCCCCGACTACGTCAGCGCCGGCGTGGACGTGGGCGCCAAGATCCCGGTCATGGGTAGCGCCGGGAAGTACGCCGTTTCCGACATCTTCGCCACGGACTGCGAGGTGGCGCGCTTCGCCGGCGAGGACGGCGCGCTCGCCTCGTCCGTTGGCATGGTCGACGCGCCGGCCGACGCGCTCTTCGGCAGCGGGAAGGGCAGCGCCGGCCTGGTCTGCAAGAAGTGAGGTGAGAAAGCGAAGTCGTAGAGCTGTTTTTTCTCGGTGTTTAATTACCTATATAAACTAATATAGTAATATATACGTGCTTAGCTGCTGCTACGGTTATTAGTGGTAGTTCAAAGAATAAAAGATTTGGTGATAATTGTCGCGTGTTAGTCGTCGTCGAACGAGCAAACGCTGGGAAGGGAACAAAGTGTTTCTCACTTGTCAGTGCCGTGATTTAGGATGAGATTGCCCGGTTCAAACTTCAAAATCGTGTCGTTGCAATCCTATATCCTCTTTTGTAATCGTGTTTGAGAATAAAAGTTGAACACTGAAGCTTAA] [+] EMBL AK108077 [CGTGCGTTCACCCCCCTAACAACTATCTCACCCCCCTAACAACTATCTCACCGGCTCGATCAATCTCTCACCGGAGATGGTGCCCGTCCGGCCGTCCGCGGCGGCGCTGCTGCTCGCCGCCACCGCTTTCCTCGTCGTCGCGGTGGGCGCCCAGCCGCTGAGCCCGGACAGCCCCATCCTGAGGGACCCCAACGTGATCCCCATCTACATGACCCCCGGCTCGTCGCCCACCGTGGCGAGCTGCTACAACCAGAACAACACGGCGTCGGGCCCCGACTGCACGGTCGAGCCGCGCGCGTGCCCGCGCGGCTGCCGCGACATGTGCTACGTTCACTGCCCCACCTGCAAGCTCGTCTGCCTGTGTGAGCTGACCGGCACGGAGTGCTACGACCCGCGGTTCGTCGGCGGCGACGGCAACAAGTTCCTGTTCCACGGGCGCAAGGACGCCGACTTCTGCCTGCTCTCCGACGCCAACCTGCACATCAACGCGCACTTCATCGGCAAGCGCAACGCGGCGGCGGCACGGGACTTCACCTGGGTGCAGGCCCTCGGCATCCGCTTCGGCGGCCACCGCCTCTACCTCGGCGTCAGGAGGACCGTCAGGTGGGACGCCGCCGTCGACCGCCTCGTGATCACCTTCGACGGCGCGCCCGTCGAGCTGGACGCCGTCCCCGCCGCCAGCTGGAGCCCAGCCTCCGTTCCGGCGCTCTCGGTCTTCCGCACCGGCCCGGCCAACGGCGTGGTGGTGCGCCTCGACGGCCGGTTCCGCATCGTCGCCAACGCGGTGCCCGTCACGGAGGAGGACTCGAGGATCCACGGCTACGGCCTCACCGCCGACGACAGCCTCGCCCACCTCAATGTGGCGTTCAAGTTCTACTCCATCAGCGCCGACGTGCACGGCGTGCTGGGCCAGACCTACCGCCCCGACTACGTCAGCGCCGGCGTGGACGTGGGCGCCAAGATCCCGGTCATGGGTAGCGCCGGGAAGTACGCCGTTTCCGACATCTTCGCCACGGACTGCGAGGTGGCGCGCTTCGCCGGCGAGGACGGCGCGCTCGCCTCGTCCGTTGGCATGGTCGACGCGCCGGCCGACGCGCTCTTCGGCAGCGGGAAGGGCAGCGCCGGCCTGGTCTGCAAGAAGTGAGGTGAGAAAGCGAAGTCGTAGAGCTGTTTTTTCTCGGTGTTTAATTACCTATATAAACTAATATAGTAATATATACGTGCTTAGCTGCTGCTACGGTTATTAGTGGTAGTTCAAAGAATAAAAGATTTGGTGATAATTGTCGCGTGTTAGTCGTCGTCGAACGAGCAAACGCTGGGAAGGGAACAAAGTGTTTCTCACTTGTCAGTGCCGTGATTTAGGATGAGATTGCCCGGTTCAAACTTCAAAATCGTGTCGTTGCAATCCTATATCCTCTTTTGTAATCGTGTTTGAGAATAAAAGTTGAACACTGAAGCTTAA] consensusID : consensus_1776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [GGCTGCAGGAATTCGGCACGAGTAACAACTATCTCACCCCCCTAACAACTATCTCACCGGCTCGAGCGGTCTCTCACCGGAGATGGTGCCCGTCCGGCCGTCCGCGGCGGCGCTGCTGCTCGCCGCCACCGCTTTCCTCGTCGTCGCGGTGGGCGCCCAGCCGCTGAGCCCGGACAGCCCCATCCTGAGGGACCCCAACGTGATCCCCATCTACATGACCCCCGGCTCGTCGCCCACCGTGGCGAGCTGCTACAACCAGAACAACACGGCGTCGGGCCCCGACTGCACGGTCGAGCCGCGCGCGTGCCCGCGCGGCTGCCGCGACATGTGCTACGTTCACTGCCCCACCTGCAAGCTCGTCTGCCTGTGTGAGCTGACCGGCACGGAGTGCTACGACCCGCGGGTCGTCGGCGGCGACGGCAACAAGTTCCTGTTTCACGGGCGCAAGGACGCCCACTTTTGCCTGCTCTCCCACGCCAACCTGCACATTAACGGCGCACTTTAACGGCAAGCGCAACCGCGGCGGCGGGAACGGGACTTTACCTGGGGTGGAGGGCCCTCGGGATTCCCTTCGGCGGGCACC] [+] EMBL BE039213 [GGCTGCAGGAATTCGGCACGAGTAACAACTATCTCACCCCCCTAACAACTATCTCACCGGCTCGAGCGGTCTCTCACCGGAGATGGTGCCCGTCCGGCCGTCCGCGGCGGCGCTGCTGCTCGCCGCCACCGCTTTCCTCGTCGTCGCGGTGGGCGCCCAGCCGCTGAGCCCGGACAGCCCCATCCTGAGGGACCCCAACGTGATCCCCATCTACATGACCCCCGGCTCGTCGCCCACCGTGGCGAGCTGCTACAACCAGAACAACACGGCGTCGGGCCCCGACTGCACGGTCGAGCCGCGCGCGTGCCCGCGCGGCTGCCGCGACATGTGCTACGTTCACTGCCCCACCTGCAAGCTCGTCTGCCTGTGTGAGCTGACCGGCACGGAGTGCTACGACCCGCGGGTCGTCGGCGGCGACGGCAACAAGTTCCTGTTTCACGGGCGCAAGGACGCCCACTTTTGCCTGCTCTCCCACGCCAACCTGCACATTAACGGCGCACTTTAACGGCAAGCGCAACCGCGGCGGCGGGAACGGGACTTTACCTGGGGTGGAGGGCCCTCGGGATTCCCTTCGGCGGGCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1776#0 -----CGTGCGTTCACCCCCC-TAACAACTATCTCACCCCCCTAACAACTATCTCACCGG 54 consensus_1776#1 GGCTGCAGGAATTCGGCACGAGTAACAACTATCTCACCCCCCTAACAACTATCTCACCGG 60 * * *** * * ************************************** consensus_1776#0 CTCGATCAATCTCTCACCGGAGATGGTGCCCGTCCGGCCGTCCGCGGCGGCGCTGCTGCT 114 consensus_1776#1 CTCGAGCGGTCTCTCACCGGAGATGGTGCCCGTCCGGCCGTCCGCGGCGGCGCTGCTGCT 120 ***** * *************************************************** consensus_1776#0 CGCCGCCACCGCTTTCCTCGTCGTCGCGGTGGGCGCCCAGCCGCTGAGCCCGGACAGCCC 174 consensus_1776#1 CGCCGCCACCGCTTTCCTCGTCGTCGCGGTGGGCGCCCAGCCGCTGAGCCCGGACAGCCC 180 ************************************************************ consensus_1776#0 CATCCTGAGGGACCCCAACGTGATCCCCATCTACATGACCCCCGGCTCGTCGCCCACCGT 234 consensus_1776#1 CATCCTGAGGGACCCCAACGTGATCCCCATCTACATGACCCCCGGCTCGTCGCCCACCGT 240 ************************************************************ consensus_1776#0 GGCGAGCTGCTACAACCAGAACAACACGGCGTCGGGCCCCGACTGCACGGTCGAGCCGCG 294 consensus_1776#1 GGCGAGCTGCTACAACCAGAACAACACGGCGTCGGGCCCCGACTGCACGGTCGAGCCGCG 300 ************************************************************ consensus_1776#0 CGCGTGCCCGCGCGGCTGCCGCGACATGTGCTACGTTCACTGCCCCACCTGCAAGCTCGT 354 consensus_1776#1 CGCGTGCCCGCGCGGCTGCCGCGACATGTGCTACGTTCACTGCCCCACCTGCAAGCTCGT 360 ************************************************************ consensus_1776#0 CTGCCTGTGTGAGCTGACCGGCACGGAGTGCTACGACCCGCGGTTCGTCGGCGGCGACGG 414 consensus_1776#1 CTGCCTGTGTGAGCTGACCGGCACGGAGTGCTACGACCCGCGGGTCGTCGGCGGCGACGG 420 ******************************************* **************** consensus_1776#0 CAACAAGTTCCTGTTCCACGGGCGCAAGGACGCCGACTTCTGCCTGCTCTCCGACGCCAA 474 consensus_1776#1 CAACAAGTTCCTGTTTCACGGGCGCAAGGACGCCCACTTTTGCCTGCTCTCCCACGCCAA 480 *************** ****************** **** ************ ******* consensus_1776#0 CCTGCACATCAACG-CGCACTTCATCGGCAAGCGCAAC-GCGGCGGCGGCA-CGGGACTT 531 consensus_1776#1 CCTGCACATTAACGGCGCACTTTAACGGCAAGCGCAACCGCGGCGGCGGGAACGGGACTT 540 ********* **** ******* * ************* ********** * ******** consensus_1776#0 CACCTGGGT--GCAGGCCCTCGGCATCCGCTTCGGCGGCCACCGCCTCTACCTCGGCGTC 589 consensus_1776#1 TACCTGGGGTGGAGGGCCCTCGGGATTCCCTTCGGCGGGCACC----------------- 583 ******* * ********* ** * ********* **** consensus_1776#0 AGGAGGACCGTCAGGTGGGACGCCGCCGTCGACCGCCTCGTGATCACCTTCGACGGCGCG 649 consensus_1776#1 ------------------------------------------------------------ consensus_1776#0 CCCGTCGAGCTGGACGCCGTCCCCGCCGCCAGCTGGAGCCCAGCCTCCGTTCCGGCGCTC 709 consensus_1776#1 ------------------------------------------------------------ consensus_1776#0 TCGGTCTTCCGCACCGGCCCGGCCAACGGCGTGGTGGTGCGCCTCGACGGCCGGTTCCGC 769 consensus_1776#1 ------------------------------------------------------------ consensus_1776#0 ATCGTCGCCAACGCGGTGCCCGTCACGGAGGAGGACTCGAGGATCCACGGCTACGGCCTC 829 consensus_1776#1 ------------------------------------------------------------ consensus_1776#0 ACCGCCGACGACAGCCTCGCCCACCTCAATGTGGCGTTCAAGTTCTACTCCATCAGCGCC 889 consensus_1776#1 ------------------------------------------------------------ consensus_1776#0 GACGTGCACGGCGTGCTGGGCCAGACCTACCGCCCCGACTACGTCAGCGCCGGCGTGGAC 949 consensus_1776#1 ------------------------------------------------------------ consensus_1776#0 GTGGGCGCCAAGATCCCGGTCATGGGTAGCGCCGGGAAGTACGCCGTTTCCGACATCTTC 1009 consensus_1776#1 ------------------------------------------------------------ consensus_1776#0 GCCACGGACTGCGAGGTGGCGCGCTTCGCCGGCGAGGACGGCGCGCTCGCCTCGTCCGTT 1069 consensus_1776#1 ------------------------------------------------------------ consensus_1776#0 GGCATGGTCGACGCGCCGGCCGACGCGCTCTTCGGCAGCGGGAAGGGCAGCGCCGGCCTG 1129 consensus_1776#1 ------------------------------------------------------------ consensus_1776#0 GTCTGCAAGAAGTGAGGTGAGAAAGCGAAGTCGTAGAGCTGTTTTTTCTCGGTGTTTAAT 1189 consensus_1776#1 ------------------------------------------------------------ consensus_1776#0 TACCTATATAAACTAATATAGTAATATATACGTGCTTAGCTGCTGCTACGGTTATTAGTG 1249 consensus_1776#1 ------------------------------------------------------------ consensus_1776#0 GTAGTTCAAAGAATAAAAGATTTGGTGATAATTGTCGCGTGTTAGTCGTCGTCGAACGAG 1309 consensus_1776#1 ------------------------------------------------------------ consensus_1776#0 CAAACGCTGGGAAGGGAACAAAGTGTTTCTCACTTGTCAGTGCCGTGATTTAGGATGAGA 1369 consensus_1776#1 ------------------------------------------------------------ consensus_1776#0 TTGCCCGGTTCAAACTTCAAAATCGTGTCGTTGCAATCCTATATCCTCTTTTGTAATCGT 1429 consensus_1776#1 ------------------------------------------------------------ consensus_1776#0 GTTTGAGAATAAAAGTTGAACACTGAAGCTTAA 1462 consensus_1776#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||