These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1808#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2080 fasta sequence [GACCGGGCTAGAACGATTTTTCACCATCTTTATCTGGTCGGTTTCATGATAAAACTGTGAAAAGTTGTGTCTTCTTCCAAAGCTGTGTGGGTATGGAAGGGTTTGTACGAGGAGAGCGCATGGAGGGTTTGGGGGAAAGAAGAAAAGATTCACGCCTTCTTTTGCCGCGGCGATGGGGTTTTGGGCCGTGGGCGGATGCGGCCGAGAGAGAGAGACCTCCCGCGCGGCGGCCGAGAGCAGCCGAGGCAGGGGGGACGGCCGGCGGCGGCGACCACGAAGCCGTCGGTTTGTTTTGTTACTACTCCATTTCTGTTCCCCCTCCCTGATCAAGTAAACTAGTTTGTAGGATCGCATCAACTCGGATGAGGAATTTTTGCCGATTAGATTTAGTTTTCAAGCTGGAAATATGGTGATTCACGGGCCTTTTTCTTGTGGTGGTTGTCGTTGTTGTTCATGCCATTTTTCTGAAGTGAAAGATGAACAAAAATTTCCACTGAAAAGTAATATTTTGACACTGCAGGTTTGTTGAAAAACGATGGGCACATCGTGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGATTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCCAAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACGTAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGAGGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCAGATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTTGATCAAATTGGCCGCGAGAAAGCATGTTCTGCTGTTGTGGATGATTCTCAGAATCCTAATGTGCAAGAAAGGCGTGTAGATGCTACTGAAACATTGAACAGTTCGCGCGCTCATTCTCAGCCCATGCCAATGCAGTCAACTACTGAAACTGTGAACCATTCACATGCTCGTCCTTGTCCCATGCATACTGCTGTTGATTGCATGCCCCTTTCTCATGCTCATCCTCAACCCATGCCGATGCAATTCCCTACCGAAACTGTGAACCATTGTCATGCTCCTACTGGTCCCATGGAAATGCCACTTGAAAACGTTGCCCTTTCTCATGCTCATGCTAGGCCCTTGCAAATGCAGTCACAACCAACGGATAGATTGACACAGGTGCAAAGAGGTAACTCAAGTAAAGGCAACATGACCACGATGAGTTCCTCCTCCATGTCATCTGGTTACAACTCAATTATTATATGCATTTCCTGATAAAGCACATCTGATGTTTTCTTTTCTTTGCACACAGGATATTCTTTGTCCTCTAAAGATCAGGATTGCAGAGTAGGTGTTATACCTGATCCCATCATCGGGCAAAAGACCATACTAAGTCGAGTTCAGGTGAATGTGGTGAAGCGCAAGATCCAAAATATTGGTTCTCAAATTCCAATCTTTGTATCTGTCATTGGAAAGAACAACGCCTCTGGAAGAATATCCTCTCTAAGTATCGCCAACCGATATGTTGATAATTACCTTCAAGACGAGAAAACTATCCGTCTTTCGCGTCTTGGGGACAAGTGGAACATCAGGCTTTCTGATTCGAGTGGTAACAGAAGGATGGTTGGTGGATGCCGAAAGTTTGCGGAAGACAATGATGTTGGAGTGGGTGATATCTGCCTGTTCGAGCTGTTGAAGAATCATAAATGCACAATGAAAGTTCATATCATCAGGGCAAAGGATATCTGTTAATCGAAAAGCCTGTTGAATCTGCTGATTTCTCTGATGACTGTTGCTGGTGCTTTTGTGCTGCTGAGAATGGTAGTCTATCCACAGTTTATGCAACTACTGGTACTAAGTTGTTATTGAACTAGTACATTGCATGCTGATTAGATGGTGATTTCCCTTGCTAATTCTCTTTTTTTGGGTGATACACTAGGGGGGTTCCCTTGCTAATTAATGACCCATGTAATTACTGATACTTACTTTTGGTGCAATGCTTTTGTA] [+] EMBL AK068359 [GACCGGGCTAGAACGATTTTTCACCATCTTTATCTGGTCGGTTTCATGATAAAACTGTGAAAAGTTGTGTCTTCTTCCAAAGCTGTGTGGGTATGGAAGGGTTTGTACGAGGAGAGCGCATGGAGGGTTTGGGGGAAAGAAGAAAAGATTCACGCCTTCTTTTGCCGCGGCGATGGGGTTTTGGGCCGTGGGCGGATGCGGCCGAGAGAGAGAGACCTCCCGCGCGGCGGCCGAGAGCAGCCGAGGCAGGGGGGACGGCCGGCGGCGGCGACCACGAAGCCGTCGGTTTGTTTTGTTACTACTCCATTTCTGTTCCCCCTCCCTGATCAAGTAAACTAGTTTGTAGGATCGCATCAACTCGGATGAGGAATTTTTGCCGATTAGATTTAGTTTTCAAGCTGGAAATATGGTGATTCACGGGCCTTTTTCTTGTGGTGGTTGTCGTTGTTGTTCATGCCATTTTTCTGAAGTGAAAGATGAACAAAAATTTCCACTGAAAAGTAATATTTTGACACTGCAGGTTTGTTGAAAAACGATGGGCACATCGTGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGATTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCCAAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACGTAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGAGGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCAGATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTTGATCAAATTGGCCGCGAGAAAGCATGTTCTGCTGTTGTGGATGATTCTCAGAATCCTAATGTGCAAGAAAGGCGTGTAGATGCTACTGAAACATTGAACAGTTCGCGCGCTCATTCTCAGCCCATGCCAATGCAGTCAACTACTGAAACTGTGAACCATTCACATGCTCGTCCTTGTCCCATGCATACTGCTGTTGATTGCATGCCCCTTTCTCATGCTCATCCTCAACCCATGCCGATGCAATTCCCTACCGAAACTGTGAACCATTGTCATGCTCCTACTGGTCCCATGGAAATGCCACTTGAAAACGTTGCCCTTTCTCATGCTCATGCTAGGCCCTTGCAAATGCAGTCACAACCAACGGATAGATTGACACAGGTGCAAAGAGGTAACTCAAGTAAAGGCAACATGACCACGATGAGTTCCTCCTCCATGTCATCTGGTTACAACTCAATTATTATATGCATTTCCTGATAAAGCACATCTGATGTTTTCTTTTCTTTGCACACAGGATATTCTTTGTCCTCTAAAGATCAGGATTGCAGAGTAGGTGTTATACCTGATCCCATCATCGGGCAAAAGACCATACTAAGTCGAGTTCAGGTGAATGTGGTGAAGCGCAAGATCCAAAATATTGGTTCTCAAATTCCAATCTTTGTATCTGTCATTGGAAAGAACAACGCCTCTGGAAGAATATCCTCTCTAAGTATCGCCAACCGATATGTTGATAATTACCTTCAAGACGAGAAAACTATCCGTCTTTCGCGTCTTGGGGACAAGTGGAACATCAGGCTTTCTGATTCGAGTGGTAACAGAAGGATGGTTGGTGGATGCCGAAAGTTTGCGGAAGACAATGATGTTGGAGTGGGTGATATCTGCCTGTTCGAGCTGTTGAAGAATCATAAATGCACAATGAAAGTTCATATCATCAGGGCAAAGGATATCTGTTAATCGAAAAGCCTGTTGAATCTGCTGATTTCTCTGATGACTGTTGCTGGTGCTTTTGTGCTGCTGAGAATGGTAGTCTATCCACAGTTTATGCAACTACTGGTACTAAGTTGTTATTGAACTAGTACATTGCATGCTGATTAGATGGTGATTTCCCTTGCTAATTCTCTTTTTTTGGGTGATACACTAGGGGGGTTCCCTTGCTAATTAATGACCCATGTAATTACTGATACTTACTTTTGGTGCAATGCTTTTGTA] consensusID : consensus_1808#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [GGACGGCCGGCGGCGGCGACCACGAAGCCGTCGGTTTGTTTTGTTACTACTCCATTTCTGTTCCCCCTCCCTGATCAAACAAACTACTCCGTACGATCGCATCAACTCGAATGAGGAATCTACGCCGACTACATTAACCTTTAAACCTGGGACATCCGGGGATCAAAAGGCCTTCTACTCGTGGTGGGCGACCAATGAACGATCATGCCATATTCATGGACTCAACGATCAACAAAAACTCCCAATGCCAAGGACTCCACCGACCCTGCAGGTACGGAGAAAAACGACGGGCACATCGCGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGATTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCCAAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACGTAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGAGGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCACATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTT] [+] EMBL CF306653 [GGACGGCCGGCGGCGGCGACCACGAAGCCGTCGGTTTGTTTTGTTACTACTCCATTTCTGTTCCCCCTCCCTGATCAAACAAACTACTCCGTACGATCGCATCAACTCGAATGAGGAATCTACGCCGACTACATTAACCTTTAAACCTGGGACATCCGGGGATCAAAAGGCCTTCTACTCGTGGTGGGCGACCAATGAACGATCATGCCATATTCATGGACTCAACGATCAACAAAAACTCCCAATGCCAAGGACTCCACCGACCCTGCAGGTACGGAGAAAAACGACGGGCACATCGCGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGATTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCCAAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACGTAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGAGGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCACATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1808#0 GACCGGGCTAGAACGATTTTTCACCATCTTTATCTGGTCGGTTTCATGATAAAACTGTGA 60 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 AAAGTTGTGTCTTCTTCCAAAGCTGTGTGGGTATGGAAGGGTTTGTACGAGGAGAGCGCA 120 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 TGGAGGGTTTGGGGGAAAGAAGAAAAGATTCACGCCTTCTTTTGCCGCGGCGATGGGGTT 180 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 TTGGGCCGTGGGCGGATGCGGCCGAGAGAGAGAGACCTCCCGCGCGGCGGCCGAGAGCAG 240 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 CCGAGGCAGGGGGGACGGCCGGCGGCGGCGACCACGAAGCCGTCGGTTTGTTTTGTTACT 300 consensus_1808#1 ------------GGACGGCCGGCGGCGGCGACCACGAAGCCGTCGGTTTGTTTTGTTACT 48 ************************************************ consensus_1808#0 ACTCCATTTCTGTTCCCCCTCCCTGATCAAGTAAACTAGTTTGTAGGATCGCATCAACTC 360 consensus_1808#1 ACTCCATTTCTGTTCCCCCTCCCTGATCAAACAAACTACTCCGTACGATCGCATCAACTC 108 ****************************** ****** * *** ************** consensus_1808#0 GGATGAGGAATTTTTGCCGATTAGATTTAGTTTTCAAGCTGGAA-ATATGGTGATTCACG 419 consensus_1808#1 GAATGAGGAATCTACGCCGACTACATTAACCTTTAAACCTGGGACATCCGGGGATCAAAA 168 * ********* * ***** ** *** * *** ** **** * ** ** *** * consensus_1808#0 GGCCTTTTTCTTGTGGTGGTTGTC--GTTGTTGTTCATGCCATTTTTCTGAAGTGAAAGA 477 consensus_1808#1 GGCCTTCTACTCGTGGTGGGCGACCAATGAACGATCATGCCATATTCATGGACTCAACGA 228 ****** * ** ******* * * * * ********* ** ** * * ** ** consensus_1808#0 TGAACAAAAATTTCCACTGAAAAGTAATATTTTGACACTGCAGGTTTGTTGAAAAACGAT 537 consensus_1808#1 TCAACAAAAACTCCCAATGCCAAGGACTCCACCGACCCTGCAGGTACGGAGAAAAACGAC 288 * ******** * *** ** *** * * *** ******** * ********* consensus_1808#0 GGGCACATCGTGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGA 597 consensus_1808#1 GGGCACATCGCGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGA 348 ********** ************************************************* consensus_1808#0 TTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCC 657 consensus_1808#1 TTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCC 408 ************************************************************ consensus_1808#0 AAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACG 717 consensus_1808#1 AAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACG 468 ************************************************************ consensus_1808#0 TAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGA 777 consensus_1808#1 TAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGA 528 ************************************************************ consensus_1808#0 GGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCAG 837 consensus_1808#1 GGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCAC 588 *********************************************************** consensus_1808#0 ATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTTGATCAAATTGGCCGCGAGAAAGC 897 consensus_1808#1 ATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTT----------------------- 625 ************************************* consensus_1808#0 ATGTTCTGCTGTTGTGGATGATTCTCAGAATCCTAATGTGCAAGAAAGGCGTGTAGATGC 957 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 TACTGAAACATTGAACAGTTCGCGCGCTCATTCTCAGCCCATGCCAATGCAGTCAACTAC 1017 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 TGAAACTGTGAACCATTCACATGCTCGTCCTTGTCCCATGCATACTGCTGTTGATTGCAT 1077 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 GCCCCTTTCTCATGCTCATCCTCAACCCATGCCGATGCAATTCCCTACCGAAACTGTGAA 1137 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 CCATTGTCATGCTCCTACTGGTCCCATGGAAATGCCACTTGAAAACGTTGCCCTTTCTCA 1197 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 TGCTCATGCTAGGCCCTTGCAAATGCAGTCACAACCAACGGATAGATTGACACAGGTGCA 1257 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 AAGAGGTAACTCAAGTAAAGGCAACATGACCACGATGAGTTCCTCCTCCATGTCATCTGG 1317 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 TTACAACTCAATTATTATATGCATTTCCTGATAAAGCACATCTGATGTTTTCTTTTCTTT 1377 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 GCACACAGGATATTCTTTGTCCTCTAAAGATCAGGATTGCAGAGTAGGTGTTATACCTGA 1437 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 TCCCATCATCGGGCAAAAGACCATACTAAGTCGAGTTCAGGTGAATGTGGTGAAGCGCAA 1497 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 GATCCAAAATATTGGTTCTCAAATTCCAATCTTTGTATCTGTCATTGGAAAGAACAACGC 1557 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 CTCTGGAAGAATATCCTCTCTAAGTATCGCCAACCGATATGTTGATAATTACCTTCAAGA 1617 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 CGAGAAAACTATCCGTCTTTCGCGTCTTGGGGACAAGTGGAACATCAGGCTTTCTGATTC 1677 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 GAGTGGTAACAGAAGGATGGTTGGTGGATGCCGAAAGTTTGCGGAAGACAATGATGTTGG 1737 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 AGTGGGTGATATCTGCCTGTTCGAGCTGTTGAAGAATCATAAATGCACAATGAAAGTTCA 1797 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 TATCATCAGGGCAAAGGATATCTGTTAATCGAAAAGCCTGTTGAATCTGCTGATTTCTCT 1857 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 GATGACTGTTGCTGGTGCTTTTGTGCTGCTGAGAATGGTAGTCTATCCACAGTTTATGCA 1917 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 ACTACTGGTACTAAGTTGTTATTGAACTAGTACATTGCATGCTGATTAGATGGTGATTTC 1977 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 CCTTGCTAATTCTCTTTTTTTGGGTGATACACTAGGGGGGTTCCCTTGCTAATTAATGAC 2037 consensus_1808#1 ------------------------------------------------------------ consensus_1808#0 CCATGTAATTACTGATACTTACTTTTGGTGCAATGCTTTTGTA 2080 consensus_1808#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||