These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1811#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [TTTTTTTTTTTTTTTTTTGCCAAAAAAATATGGCCAAAATATGGGTAATTACCAAGAAAATTTTCTGTTGCTTGTCCATCAGAAGAGCTCATTGCTTCATTAATAACATAACAAACATAGAACACGTTTTATATTGCAACAATATTGGATAGGTAGAGCTCTAATTACATAGGTGCAGGGGCAGGGAAAATATGGTTGGGGTTCCAGCTGCTGGATAATCCTCCCCGATCCGAATTGGAGGGATTATTTACCACTCCCAAACCAGCCAACCTTATATAATTTATATTAAAGAAAATAAGCCAGTTGTACATGGAAGCGACGGCTAACGGATACGGCCTCCTGACGGTTGGAGCCCGTTTACTGATCCACAAAAACCTCCAGAATGCACGCGCCGTTGTCACAGGCCCAATCCACTGTGCGATTGACATAGACAAAACGATNAGTCCCACGTATATAACAATGAACACGATGGATTCTGCCGTCGAGGTTCTCATCACGGAACGGGAGGCCGAGAAGAACGCCAGGATTATTCTGATTAGCGAGACCCACATGCAGGGGAACGCCACCAGGAATTTCTTCCACAACCCGGTGGAGCGCGACGCCTTTCCTTATACCAGCAGGATCACGGGGATCACCGATATTCTACCGCTATGGCTTTGAGGACCACGGACCATCT] [+] EMBL CA761320 [TTTTTTTTTTTTTTTTTTGCCAAAAAAATATGGCCAAAATATGGGTAATTACCAAGAAAATTTTCTGTTGCTTGTCCATCAGAAGAGCTCATTGCTTCATTAATAACATAACAAACATAGAACACGTTTTATATTGCAACAATATTGGATAGGTAGAGCTCTAATTACATAGGTGCAGGGGCAGGGAAAATATGGTTGGGGTTCCAGCTGCTGGATAATCCTCCCCGATCCGAATTGGAGGGATTATTTACCACTCCCAAACCAGCCAACCTTATATAATTTATATTAAAGAAAATAAGCCAGTTGTACATGGAAGCGACGGCTAACGGATACGGCCTCCTGACGGTTGGAGCCCGTTTACTGATCCACAAAAACCTCCAGAATGCACGCGCCGTTGTCACAGGCCCAATCCACTGTGCGATTGACATAGACAAAACGATNAGTCCCACGTATATAACAATGAACACGATGGATTCTGCCGTCGAGGTTCTCATCACGGAACGGGAGGCCGAGAAGAACGCCAGGATTATTCTGATTAGCGAGACCCACATGCAGGGGAACGCCACCAGGAATTTCTTCCACAACCCGGTGGAGCGCGACGCCTTTCCTTATACCAGCAGGATCACGGGGATCACCGATATTCTACCGCTATGGCTTTGAGGACCACGGACCATCT] consensusID : consensus_1811#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [TTTTTTTGCAGAAAAATATGTCCAAGANNATGGTTAATTACCAAGTAAATTTTCTGTGCTTGTCCATCAGAAGAGCTCATGATCATTAATAACATAACAAAAATAGAACACGTAAAATATAAGAAAAATATTGTNTAGGTAGTGCTCTAATTACATAGGTGCAGGGGCAGGTGAGATATGGTTCGGGTTCCAGCGTGCTTGATAATCCTCCCCGATCCGAATTGGAGTGATTATGTACCACTCCCAAACCAGCAAACATTATATAAGTTATATGAAAGAAGAGAAGCCAGTTGTAGATGGAAGCGACGGCAAACGGATACTGCCTCCTGACGGTGTGAGCCCGGTGACTGAGCCACAAAAACCTCCAGAATGCACGCGCCGTCGTCACAGGTCCAATCCACTGTGCGACAAAGAGAGACAAAACGATGAGGCCCACGTAGATAACAATGTACACGATGGATTCTGCGTCGAGGTTCTCATCACGGCNCGGGAGGCCGCGAAGAAGGCAGGATTAGGCTGACGAGCGAGACCCAGATGCAGTGCAACGCCGCCAGAAGCTCTTCCACGAACCGGGGGAGC] [-] EMBL BM038225 [TTTTTTTGCAGAAAAATATGTCCAAGANNATGGTTAATTACCAAGTAAATTTTCTGTGCTTGTCCATCAGAAGAGCTCATGATCATTAATAACATAACAAAAATAGAACACGTAAAATATAAGAAAAATATTGTNTAGGTAGTGCTCTAATTACATAGGTGCAGGGGCAGGTGAGATATGGTTCGGGTTCCAGCGTGCTTGATAATCCTCCCCGATCCGAATTGGAGTGATTATGTACCACTCCCAAACCAGCAAACATTATATAAGTTATATGAAAGAAGAGAAGCCAGTTGTAGATGGAAGCGACGGCAAACGGATACTGCCTCCTGACGGTGTGAGCCCGGTGACTGAGCCACAAAAACCTCCAGAATGCACGCGCCGTCGTCACAGGTCCAATCCACTGTGCGACAAAGAGAGACAAAACGATGAGGCCCACGTAGATAACAATGTACACGATGGATTCTGCGTCGAGGTTCTCATCACGGCNCGGGAGGCCGCGAAGAAGGCAGGATTAGGCTGACGAGCGAGACCCAGATGCAGTGCAACGCCGCCAGAAGCTCTTCCACGAACCGGGGGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1811#0 TTTTTTTTTTTTTTTTTTGCCAAAAAAATATGGCCAA-AATATGGGTAATTACCAAGAAA 59 consensus_1811#1 -----------TTTTTTTGC-AGAAAAATATGTCCAAGANNATGGTTAATTACCAAGTAA 48 ********* * ********* **** * **** *********** ** consensus_1811#0 ATTTTCTGTTGCTTGTCCATCAGAAGAGCTCATTGCTTCATTAATAACATAACAAACATA 119 consensus_1811#1 ATTTTCTGT-GCTTGTCCATCAGAAGAGCTCATGA--TCATTAATAACATAACAAAAATA 105 ********* *********************** ******************* *** consensus_1811#0 GAACACGTTTTATATTGCAACAATATTGGATAGGTAGAGCTCTAATTACATAGGTGCAGG 179 consensus_1811#1 GAACACGTAAAATATAAGAAAAATATTGTNTAGGTAGTGCTCTAATTACATAGGTGCAGG 165 ******** **** ** ******* ******* ********************** consensus_1811#0 GGCAGGGAAAATATGGTTGGGGTTCCAGC-TGCTGGATAATCCTCCCCGATCCGAATTGG 238 consensus_1811#1 GGCAGGTGAGATATGGTTCGGGTTCCAGCGTGCTTGATAATCCTCCCCGATCCGAATTGG 225 ****** * ******** ********** **** ************************* consensus_1811#0 AGGGATTATTTACCACTCCCAAACCAGCCAACCTTATATAATTTATATTAAAGAAAATAA 298 consensus_1811#1 AGTGATTATGTACCACTCCCAAACCAGCAAACATTATATAAGTTATATGAAAGAAGAGAA 285 ** ****** ****************** *** ******** ****** ****** * ** consensus_1811#0 GCCAGTTGTACATGGAAGCGACGGCTAACGGATACGGCCTCCTGACGGTTGGAGCCCGTT 358 consensus_1811#1 GCCAGTTGTAGATGGAAGCGACGGCAAACGGATACTGCCTCCTGACGGTGTGAGCCCGGT 345 ********** ************** ********* ************* ******* * consensus_1811#0 TACTGATCCACAAAAACCTCCAGAATGCACGCGCCGTTGTCACAGGCCCAATCCACTGTG 418 consensus_1811#1 GACTGAGCCACAAAAACCTCCAGAATGCACGCGCCGTCGTCACAGGTCCAATCCACTGTG 405 ***** ****************************** ******** ************* consensus_1811#0 CGATTGACATAGACAAAACGATNAGTCCCACGTATATAACAATGAACACGATGGATTCTG 478 consensus_1811#1 CGACAAAGAGAGACAAAACGATGAGGCCCACGTAGATAACAATGTACACGATGGATTCTG 465 *** * * ************ ** ******** ********* *************** consensus_1811#0 CCGTCGAGGTTCTCATCACGGAACGGGAGGCCGAGAAGAACGCCAGGATTATTCTGATTA 538 consensus_1811#1 C-GTCGAGGTTCTCATCACGGCNCGGGAGGCCGCGAAGAA-GGCAGGATTAGGCTGACGA 523 * ******************* ********** ****** * ******** **** * consensus_1811#0 GCGAGACCCACATGCAGGGGAACGCCACCAGGAATTTCTTCCACAACCCGGTGGAGCGCG 598 consensus_1811#1 GCGAGACCCAGATGCAGTGCAACGCCGCCAG-AAGCTCTTCCACGAACCGGGGGAGC--- 579 ********** ****** * ****** **** ** ******** * **** ***** consensus_1811#0 ACGCCTTTCCTTATACCAGCAGGATCACGGGGATCACCGATATTCTACCGCTATGGCTTT 658 consensus_1811#1 ------------------------------------------------------------ consensus_1811#0 GAGGACCACGGACCATCT 676 consensus_1811#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||