These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 799 fasta sequence [ATCGCATGTTGAGGACAAGGTGAGTAAGGGATTGGAGGAAACTCGTGCAGAAGATGTGGATGCAAATCATATGGACTTGGATGAATCAGAGGCTGTGGATGAGGATGCGAAAGGCAAGAGCTTTGGTGAATCGGAGATGGGGTTTGTGTCTGTGGAAGAAGTTTCTGTTACACATGAGGTGATGCTTCCTAATTACGAGGAGGTGGCGACAGAAGAATGAGTTCTCACTTTCCTGACATTCAGAGGTTCTGATGTGAAATGCCTACTGGCCTCCCCACTACGGCAATGTCATTGTGGATCTGACGAGCTCTCCCTCAGAAATGCACTCCAATTCGATGGGTATTTTCATGTCAAGCCCGCGCATCAGCGATGTAGCTACCTGGTGGTATATTCTAGTAAAGATCGGCATTAATCCCACTTGTAACGTATCCTTGTTCAAGGACGGTTAAACGGTTAGTGCTTAATTTAGATGCCCTTTTGACGCAATCACTTTGCTGGGCTCCTGTTGGATAGAACAAAATTGTGCATTCTCATCCTCTGTTTGCAGTGATAGTTCAGTACTTCAGTCGTAATGTAGATTTTTCTTCCATTGTCATGTCTTCGGNTATACCAATGAGTGAGAGGTAATGGATTTGGGAAGATATCCCTGTGACCTGGCTGGCATTAGATTATAGCTGACACAACACTAGACATCTGNTCATGTGTGGAGAAAACCACTAGAGATGTGGTAGAAAAGCTGGGTGCACGGTTGGATTGTTGGAAAGCTGGGGGCTGCTNAAGGTTTCATAAGCCCAANATT] [+] EMBL CA766124 [ATCGCATGTTGAGGACAAGGTGAGTAAGGGATTGGAGGAAACTCGTGCAGAAGATGTGGATGCAAATCATATGGACTTGGATGAATCAGAGGCTGTGGATGAGGATGCGAAAGGCAAGAGCTTTGGTGAATCGGAGATGGGGTTTGTGTCTGTGGAAGAAGTTTCTGTTACACATGAGGTGATGCTTCCTAATTACGAGGAGGTGGCGACAGAAGAATGAGTTCTCACTTTCCTGACATTCAGAGGTTCTGATGTGAAATGCCTACTGGCCTCCCCACTACGGCAATGTCATTGTGGATCTGACGAGCTCTCCCTCAGAAATGCACTCCAATTCGATGGGTATTTTCATGTCAAGCCCGCGCATCAGCGATGTAGCTACCTGGTGGTATATTCTAGTAAAGATCGGCATTAATCCCACTTGTAACGTATCCTTGTTCAAGGACGGTTAAACGGTTAGTGCTTAATTTAGATGCCCTTTTGACGCAATCACTTTGCTGGGCTCCTGTTGGATAGAACAAAATTGTGCATTCTCATCCTCTGTTTGCAGTGATAGTTCAGTACTTCAGTCGTAATGTAGATTTTTCTTCCATTGTCATGTCTTCGGNTATACCAATGAGTGAGAGGTAATGGATTTGGGAAGATATCCCTGTGACCTGGCTGGCATTAGATTATAGCTGACACAACACTAGACATCTGNTCATGTGTGGAGAAAACCACTAGAGATGTGGTAGAAAAGCTGGGTGCACGGTTGGATTGTTGGAAAGCTGGGGGCTGCTNAAGGTTTCATAAGCCCAANATT] consensusID : consensus_1828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [GAGTCGGGGGATGCAGATGCTGATGCGAAGAACAGTAACTTGGAAAAGTCGGAGGCCGGGGGTGCAGATTTGAGGAGCAATTGCTTGGAGGAGCTGGTGTCGGGTGATGCGGATGTACGGGGGACGAGTGCGGAGGAATTGGAATCGCATGTTGAGGACAAGGTGAGTAAGGGATTGGAGGAAACTCGTGCAGAAGATGTGGATGCAAATCATATGGACTTGGATGAATCAGAGGCTGTGGATGAGGATGCGAAAGGCAAGAGCTTTGGTGAATCGGAGATGGGGTTTGTGTCTGTGGAAGAAGTTTCTGTTACACATGAGGTGATGCTTCCTAATTACGAGGAGGTGGCGACAGAGGGAGATGGCGATACAGCAATGGCTGCGGTAGAAAATGATGCAGGCTCATTGGCAGAAACAGTAGTGATGACACATGAGGAGTTTGTGGCAGTGCCTGAGGATGATGAAGAAGAGGCAGATGGGGATGAGGAGAATGATGCAACAGGGTTGAGCTTGGGCATCGGCTCCGCCAATGATTATGACAGTACAGATGGTGAAGAGGATGCAAATGTGGAGAATCTGGGTGAGGGT] [+] EMBL CA756475 [GAGTCGGGGGATGCAGATGCTGATGCGAAGAACAGTAACTTGGAAAAGTCGGAGGCCGGGGGTGCAGATTTGAGGAGCAATTGCTTGGAGGAGCTGGTGTCGGGTGATGCGGATGTACGGGGGACGAGTGCGGAGGAATTGGAATCGCATGTTGAGGACAAGGTGAGTAAGGGATTGGAGGAAACTCGTGCAGAAGATGTGGATGCAAATCATATGGACTTGGATGAATCAGAGGCTGTGGATGAGGATGCGAAAGGCAAGAGCTTTGGTGAATCGGAGATGGGGTTTGTGTCTGTGGAAGAAGTTTCTGTTACACATGAGGTGATGCTTCCTAATTACGAGGAGGTGGCGACAGAGGGAGATGGCGATACAGCAATGGCTGCGGTAGAAAATGATGCAGGCTCATTGGCAGAAACAGTAGTGATGACACATGAGGAGTTTGTGGCAGTGCCTGAGGATGATGAAGAAGAGGCAGATGGGGATGAGGAGAATGATGCAACAGGGTTGAGCTTGGGCATCGGCTCCGCCAATGATTATGACAGTACAGATGGTGAAGAGGATGCAAATGTGGAGAATCTGGGTGAGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1828#0 ------------------------------------------------------------ consensus_1828#1 GAGTCGGGGGATGCAGATGCTGATGCGAAGAACAGTAACTTGGAAAAGTCGGAGGCCGGG 60 consensus_1828#0 ------------------------------------------------------------ consensus_1828#1 GGTGCAGATTTGAGGAGCAATTGCTTGGAGGAGCTGGTGTCGGGTGATGCGGATGTACGG 120 consensus_1828#0 -----------------------ATCGCATGTTGAGGACAAGGTGAGTAAGGGATTGGAG 37 consensus_1828#1 GGGACGAGTGCGGAGGAATTGGAATCGCATGTTGAGGACAAGGTGAGTAAGGGATTGGAG 180 ************************************* consensus_1828#0 GAAACTCGTGCAGAAGATGTGGATGCAAATCATATGGACTTGGATGAATCAGAGGCTGTG 97 consensus_1828#1 GAAACTCGTGCAGAAGATGTGGATGCAAATCATATGGACTTGGATGAATCAGAGGCTGTG 240 ************************************************************ consensus_1828#0 GATGAGGATGCGAAAGGCAAGAGCTTTGGTGAATCGGAGATGGGGTTTGTGTCTGTGGAA 157 consensus_1828#1 GATGAGGATGCGAAAGGCAAGAGCTTTGGTGAATCGGAGATGGGGTTTGTGTCTGTGGAA 300 ************************************************************ consensus_1828#0 GAAGTTTCTGTTACACATGAGGTGATGCTTCCTAATTACGAGGAGGTGGCGACAGAAGAA 217 consensus_1828#1 GAAGTTTCTGTTACACATGAGGTGATGCTTCCTAATTACGAGGAGGTGGCGACAGAGGGA 360 ******************************************************** * * consensus_1828#0 TGAGTTCTCACTTTCCTGACATTCAGAGGTTCTGATGTGAAATGCCTACTGGCCTCCCCA 277 consensus_1828#1 GATGGCGATACAGCAATGGCTGCGGTAGAAAATGATGC---AGGCTCATTGGCAGAAACA 417 * ** ** * ** ***** * ** * **** ** consensus_1828#0 CTACGGCAATGTCAT-TGTGGATCTGACGAGCTCTCCCTCAGAA--ATGCACTCCAATTC 334 consensus_1828#1 GTA--GTGATGACACATGAGGAGTTTGTG-GCAGTGCCTGAGGATGATGAAGAAGAGGCA 474 ** * *** ** ** *** * * ** * *** ** * *** * * consensus_1828#0 GATGGGTATTTTCATGTCAAGCCCGCGCATCAGCGATGTAGCTACCTGGTGGTATATTCT 394 consensus_1828#1 GATGGGGATG-----AGGAGAATGATGCAACAGGGTTG-AGCT---TGGGCATCGGCTCC 525 ****** ** * *** *** * ** **** *** * ** consensus_1828#0 AGTAAAGATCGGCATTAATCCCACTTGTAACGTATCCTTGTTCAAGGACGGTTAAACGGT 454 consensus_1828#1 GCCAATGATTATGAC-AGTACAGATGGTGAAGAGGATGCAAATGTGGAGAATCTG--GGT 582 ** *** * * * * * ** * * *** * *** consensus_1828#0 TAGTGCTTAATTTAGATGCCCTTTTGACGCAATCACTTTGCTGGGCTCCTGTTGGATAGA 514 consensus_1828#1 GAGGGT------------------------------------------------------ 588 ** * consensus_1828#0 ACAAAATTGTGCATTCTCATCCTCTGTTTGCAGTGATAGTTCAGTACTTCAGTCGTAATG 574 consensus_1828#1 ------------------------------------------------------------ consensus_1828#0 TAGATTTTTCTTCCATTGTCATGTCTTCGGNTATACCAATGAGTGAGAGGTAATGGATTT 634 consensus_1828#1 ------------------------------------------------------------ consensus_1828#0 GGGAAGATATCCCTGTGACCTGGCTGGCATTAGATTATAGCTGACACAACACTAGACATC 694 consensus_1828#1 ------------------------------------------------------------ consensus_1828#0 TGNTCATGTGTGGAGAAAACCACTAGAGATGTGGTAGAAAAGCTGGGTGCACGGTTGGAT 754 consensus_1828#1 ------------------------------------------------------------ consensus_1828#0 TGTTGGAAAGCTGGGGGCTGCTNAAGGTTTCATAAGCCCAANATT 799 consensus_1828#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||