These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1360 fasta sequence [TCCTAAACTCACCCCCGATCGAATCCCCAATTGTTCAATCTCCTCCTCCGGGATGGGGCGCCGCCGCCGCCACCGCCGCCACCACCGCCGGGACGGGACCGATCTGCTGGAGGCCGAGCCGTTGTTGGACGACTCCCACCTGATGACGGTGCGGGATCCATTGCCAGCGGCGTACATTGCAGTATGCCGTCGGGACTGGTATTCCCACTCCTACTACCGCCTGTACAAGGTGGAAGACGACTCTTCCTCCTCCTCCTCGCCGTCGTCGCCGGTGACAAAACAAGTCCTCCACCGCTTCGCTCATCTACCGACGGACGTGGCCTGCAAGACCGTCGTCTCCGTGCGCTCAAGGTGGATCGTCTCCGTCGGGGGAAACCCCGGCGGCACCGTCCTCTTCGACACCGAGACAAGGAGGGTCATCACCGGGCCGAAGCTGCTGTCCGCGAAGCTGTCGCCCGTCGCGGCGGCCGTCGGGGACAGGATCTACGTCCTCTCGAGCCGCCCCCAATACTTCGAGCCGTGGTTCGAGGTGCTCGACCTGTCCCGGGCCACGGTGGTGGCAACGGCGGACGGCCGCCACACGCTCGATGGGTGCTCGTGGGAGGCCTTGCCGGATCCCATATGCTTCCCTTGTGTGCTCTCCCCGGCTGGGTACCTCGCCCCGCCCCTCATCCTCGTCACCTCCTACGTGCTATTTCTCCCCTATCTGCTCGTGTCCGTGAATAATATGGGCAAGATGACAACCTATGCATTTGACACCGGCACTCACCGGTGGCACAAGCTGTACGACTACGGCCTGCCGTTCTTCGGCTCCGCGACGCCACTAGTAGGCATCCGTCTAGTCTCATCCGCTCCTCATCTCAAGCTATCCGTCACCGAGTTCCCGGTGAAAACCGAGGCACGTGAGGAGGTTGGTGTAGGGGAAGCGCTATGCTTGGCTTCCATGGAGGACGAGGGGAGCTTTTCTTGCATTACATTCAGGCTTGATGACCGCGAACACCACATGTCTTATGATAAAGATATACACGAATTCTATCCAAGGAAGATGTATTTAAATCTCACCACCTATAAAATAGTGGAGGGGGAGAAGACTGATATGGACATTGTAGTCCGCTGCAAACGGGACAAGGCCTTGAAGATTTTCAGTTCCCATGGGTTCTCCTCTCCACCCATCGCCTTTGCTTTATCCATATAAGCAAGACCCACCAACACTTCTGTTTCACATTTTGGTCCTTCATAACTTGTGCAAATGTATATATGTGCCATGTGCCAATGTTCATTTCTCATGCTTTCTACACTACATAGGGAAATTTCCTTGTACTGAATTTTCCTTCTACACTACATGTACAATAAAAGACCT] [+] EMBL AK067695 [TCCTAAACTCACCCCCGATCGAATCCCCAATTGTTCAATCTCCTCCTCCGGGATGGGGCGCCGCCGCCGCCACCGCCGCCACCACCGCCGGGACGGGACCGATCTGCTGGAGGCCGAGCCGTTGTTGGACGACTCCCACCTGATGACGGTGCGGGATCCATTGCCAGCGGCGTACATTGCAGTATGCCGTCGGGACTGGTATTCCCACTCCTACTACCGCCTGTACAAGGTGGAAGACGACTCTTCCTCCTCCTCCTCGCCGTCGTCGCCGGTGACAAAACAAGTCCTCCACCGCTTCGCTCATCTACCGACGGACGTGGCCTGCAAGACCGTCGTCTCCGTGCGCTCAAGGTGGATCGTCTCCGTCGGGGGAAACCCCGGCGGCACCGTCCTCTTCGACACCGAGACAAGGAGGGTCATCACCGGGCCGAAGCTGCTGTCCGCGAAGCTGTCGCCCGTCGCGGCGGCCGTCGGGGACAGGATCTACGTCCTCTCGAGCCGCCCCCAATACTTCGAGCCGTGGTTCGAGGTGCTCGACCTGTCCCGGGCCACGGTGGTGGCAACGGCGGACGGCCGCCACACGCTCGATGGGTGCTCGTGGGAGGCCTTGCCGGATCCCATATGCTTCCCTTGTGTGCTCTCCCCGGCTGGGTACCTCGCCCCGCCCCTCATCCTCGTCACCTCCTACGTGCTATTTCTCCCCTATCTGCTCGTGTCCGTGAATAATATGGGCAAGATGACAACCTATGCATTTGACACCGGCACTCACCGGTGGCACAAGCTGTACGACTACGGCCTGCCGTTCTTCGGCTCCGCGACGCCACTAGTAGGCATCCGTCTAGTCTCATCCGCTCCTCATCTCAAGCTATCCGTCACCGAGTTCCCGGTGAAAACCGAGGCACGTGAGGAGGTTGGTGTAGGGGAAGCGCTATGCTTGGCTTCCATGGAGGACGAGGGGAGCTTTTCTTGCATTACATTCAGGCTTGATGACCGCGAACACCACATGTCTTATGATAAAGATATACACGAATTCTATCCAAGGAAGATGTATTTAAATCTCACCACCTATAAAATAGTGGAGGGGGAGAAGACTGATATGGACATTGTAGTCCGCTGCAAACGGGACAAGGCCTTGAAGATTTTCAGTTCCCATGGGTTCTCCTCTCCACCCATCGCCTTTGCTTTATCCATATAAGCAAGACCCACCAACACTTCTGTTTCACATTTTGGTCCTTCATAACTTGTGCAAATGTATATATGTGCCATGTGCCAATGTTCATTTCTCATGCTTTCTACACTACATAGGGAAATTTCCTTGTACTGAATTTTCCTTCTACACTACATGTACAATAAAAGACCT] consensusID : consensus_1844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [CGTGACCGCCACCTAGGTAGCATCCGTCTAGTCTCATCCGGCTCCTCATCTCAAGCTATCCGTCACCGAGTTCCCGGTGAAAACCGAGGCACGTGAGGAGGTTGGTGTAGGGGAAGCGCTATGCTTGGCTTCCATGGAGGACGAGGGGAGCTTTTCTTGCATTACATTCAGGCTTGATGACCGCGAACANCCACATGTCTTATGATAAAGATATACCCGAATTCTATCCAAGGAAGATGTATTTAAATCTCACCACCTATAAAATAGTGGAGGGGGAGAAGACTGATATGGACACTTGTAGTCCGCTGCAAACGGGACAAGCCTTGAAGATTTTCAGTTCCCATGGGTTCTCGCCTTTGCTTTATCAATATAAGCAAGACCCACCAACACTTCTGTTTCACATTTTGGTCCTTCATAACTTGTCAAATGTATATACCCATGTCCATGTTCATTTCTCATGCTTTCTACACTACATAGGGAAATTTCCTTGTACTGAATTTTCCTTCTACACTACATGTACAATAAAAGACCTGTTTGCCAAAAAAAA] [+] EMBL BM038157 [CGTGACCGCCACCTAGGTAGCATCCGTCTAGTCTCATCCGGCTCCTCATCTCAAGCTATCCGTCACCGAGTTCCCGGTGAAAACCGAGGCACGTGAGGAGGTTGGTGTAGGGGAAGCGCTATGCTTGGCTTCCATGGAGGACGAGGGGAGCTTTTCTTGCATTACATTCAGGCTTGATGACCGCGAACANCCACATGTCTTATGATAAAGATATACCCGAATTCTATCCAAGGAAGATGTATTTAAATCTCACCACCTATAAAATAGTGGAGGGGGAGAAGACTGATATGGACACTTGTAGTCCGCTGCAAACGGGACAAGCCTTGAAGATTTTCAGTTCCCATGGGTTCTCGCCTTTGCTTTATCAATATAAGCAAGACCCACCAACACTTCTGTTTCACATTTTGGTCCTTCATAACTTGTCAAATGTATATACCCATGTCCATGTTCATTTCTCATGCTTTCTACACTACATAGGGAAATTTCCTTGTACTGAATTTTCCTTCTACACTACATGTACAATAAAAGACCTGTTTGCCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1844#0 TCCTAAACTCACCCCCGATCGAATCCCCAATTGTTCAATCTCCTCCTCCGGGATGGGGCG 60 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 CCGCCGCCGCCACCGCCGCCACCACCGCCGGGACGGGACCGATCTGCTGGAGGCCGAGCC 120 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 GTTGTTGGACGACTCCCACCTGATGACGGTGCGGGATCCATTGCCAGCGGCGTACATTGC 180 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 AGTATGCCGTCGGGACTGGTATTCCCACTCCTACTACCGCCTGTACAAGGTGGAAGACGA 240 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 CTCTTCCTCCTCCTCCTCGCCGTCGTCGCCGGTGACAAAACAAGTCCTCCACCGCTTCGC 300 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 TCATCTACCGACGGACGTGGCCTGCAAGACCGTCGTCTCCGTGCGCTCAAGGTGGATCGT 360 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 CTCCGTCGGGGGAAACCCCGGCGGCACCGTCCTCTTCGACACCGAGACAAGGAGGGTCAT 420 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 CACCGGGCCGAAGCTGCTGTCCGCGAAGCTGTCGCCCGTCGCGGCGGCCGTCGGGGACAG 480 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 GATCTACGTCCTCTCGAGCCGCCCCCAATACTTCGAGCCGTGGTTCGAGGTGCTCGACCT 540 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 GTCCCGGGCCACGGTGGTGGCAACGGCGGACGGCCGCCACACGCTCGATGGGTGCTCGTG 600 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 GGAGGCCTTGCCGGATCCCATATGCTTCCCTTGTGTGCTCTCCCCGGCTGGGTACCTCGC 660 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 CCCGCCCCTCATCCTCGTCACCTCCTACGTGCTATTTCTCCCCTATCTGCTCGTGTCCGT 720 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 GAATAATATGGGCAAGATGACAACCTATGCATTTGACACCGGCACTCACCGGTGGCACAA 780 consensus_1844#1 ------------------------------------------------------------ consensus_1844#0 GCTGTACGACTACGGCCTGCCGTTCTTCGGCTCCGCGAC-GCCAC-TAGTAGGCATCCGT 838 consensus_1844#1 ---------------------------------CGTGACCGCCACCTAGGTAGCATCCGT 27 ** *** ***** *** ******** consensus_1844#0 CTAGTCTCATCCG-CTCCTCATCTCAAGCTATCCGTCACCGAGTTCCCGGTGAAAACCGA 897 consensus_1844#1 CTAGTCTCATCCGGCTCCTCATCTCAAGCTATCCGTCACCGAGTTCCCGGTGAAAACCGA 87 ************* ********************************************** consensus_1844#0 GGCACGTGAGGAGGTTGGTGTAGGGGAAGCGCTATGCTTGGCTTCCATGGAGGACGAGGG 957 consensus_1844#1 GGCACGTGAGGAGGTTGGTGTAGGGGAAGCGCTATGCTTGGCTTCCATGGAGGACGAGGG 147 ************************************************************ consensus_1844#0 GAGCTTTTCTTGCATTACATTCAGGCTTGATGACCGCGAACACC-ACATGTCTTATGATA 1016 consensus_1844#1 GAGCTTTTCTTGCATTACATTCAGGCTTGATGACCGCGAACANCCACATGTCTTATGATA 207 ****************************************** * *************** consensus_1844#0 AAGATATACACGAATTCTATCCAAGGAAGATGTATTTAAATCTCACCACCTATAAAATAG 1076 consensus_1844#1 AAGATATACCCGAATTCTATCCAAGGAAGATGTATTTAAATCTCACCACCTATAAAATAG 267 ********* ************************************************** consensus_1844#0 TGGAGGGGGAGAAGACTGATATGGACA-TTGTAGTCCGCTGCAAACGGGACAAGGCCTTG 1135 consensus_1844#1 TGGAGGGGGAGAAGACTGATATGGACACTTGTAGTCCGCTGCAAACGGGACAAG-CCTTG 326 *************************** ************************** ***** consensus_1844#0 AAGATTTTCAGTTCCCATGGGTTCTCCTCTCCACCCATCGCCTTTGCTTTATCCATATAA 1195 consensus_1844#1 AAGATTTTCAGTTCCCATGGGTTCTC-------------GCCTTTGCTTTATCAATATAA 373 ************************** ************** ****** consensus_1844#0 GCAAGACCCACCAACACTTCTGTTTCACATTTTGGTCCTTCATAACTTGTGCAAATGTAT 1255 consensus_1844#1 GCAAGACCCACCAACACTTCTGTTTCACATTTTGGTCCTTCATAACTTGT-CAAATGTAT 432 ************************************************** ********* consensus_1844#0 ATATGTGCCATGTGCCAATGTTCATTTCTCATGCTTTCTACACTACATAGGGAAATTTCC 1315 consensus_1844#1 ATAC---CCATGTCC--ATGTTCATTTCTCATGCTTTCTACACTACATAGGGAAATTTCC 487 *** ****** * ******************************************* consensus_1844#0 TTGTACTGAATTTTCCTTCTACACTACATGTACAATAAAAGACCT--------------- 1360 consensus_1844#1 TTGTACTGAATTTTCCTTCTACACTACATGTACAATAAAAGACCTGTTTGCCAAAAAAAA 547 ********************************************* 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||