These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1850#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [TCCGGTGGTCGGCGGCGAGCCGAGGCGGCGGAGGGATGGGTGGGGGGATGATCTGAGCGGCAGCGGAGGACCTGGCGCGGAGCCGGCCGGTGGCGCTGTCGCTGTACAGGCGGATCCTGCGGGCGCTGAACTCGCCGGAGCTGCCGCTGGGGCACGCGGCGCGGCTGGCGAAGAAGGCGGAGTGCCGCGCCATCTTCGTCTTCGGCGCCGAGGAGAGGTCGCTCCACAACATCCGCGACCTCGTCGACGCCGCGCGCCACACCCTCGGCCTCCTCCACCGCGGCCGCCTCCCTTGAGTTGGGAGAAGAAGCAAGCTCGCGAGCTACAGCTATGGTATTATTACGCGTCTATTTCAGTGTTTTTTTTCTTAGCCATTCTAGATTGTAAGATTCAGTTCGTCCCTGTGTGACATGAACTGTGTTGGAGTGAACTAGTATATGCCCGATTTTAGATTTTTCTGCTATGTATGTGTACCACGCATAACATATCTATTCCAAACCGAAAAACGGTTAGCATTATGAATTTATTTCCACTGGAGTCAATTTGATGTTGTTCTTAGATTTGAGATGTAAAGTTCTCGATGGTACGAACTGATAAAA] [+] EMBL AK120897 [TCCGGTGGTCGGCGGCGAGCCGAGGCGGCGGAGGGATGGGTGGGGGGATGATCTGAGCGGCAGCGGAGGACCTGGCGCGGAGCCGGCCGGTGGCGCTGTCGCTGTACAGGCGGATCCTGCGGGCGCTGAACTCGCCGGAGCTGCCGCTGGGGCACGCGGCGCGGCTGGCGAAGAAGGCGGAGTGCCGCGCCATCTTCGTCTTCGGCGCCGAGGAGAGGTCGCTCCACAACATCCGCGACCTCGTCGACGCCGCGCGCCACACCCTCGGCCTCCTCCACCGCGGCCGCCTCCCTTGAGTTGGGAGAAGAAGCAAGCTCGCGAGCTACAGCTATGGTATTATTACGCGTCTATTTCAGTGTTTTTTTTCTTAGCCATTCTAGATTGTAAGATTCAGTTCGTCCCTGTGTGACATGAACTGTGTTGGAGTGAACTAGTATATGCCCGATTTTAGATTTTTCTGCTATGTATGTGTACCACGCATAACATATCTATTCCAAACCGAAAAACGGTTAGCATTATGAATTTATTTCCACTGGAGTCAATTTGATGTTGTTCTTAGATTTGAGATGTAAAGTTCTCGATGGTACGAACTGATAAAA] consensusID : consensus_1850#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [TTCTCTTCCCGTGGCCCTTGCGTCGGCGGCGGAGGGATGGCGAAGGCCGGTGGGGGGATGATCTGGGCGACGGCGGAGGACCTGGCGCGGAGCCGGCCGGTGGTGCTGTCGCTGTACAGGCAGATCCTGCGGGCGCTGAACTCGCCGGCGCTGCCGCTGGGGCACGCGGCGCGGCTGGCGAAGAAGGCGGAGTGCCGCGCCATCTTCATCTTCGCCGCCGAGGAGAGGTCGATCCACAACATCCGCGACCTCCTCGACGCCGCGCGCCACACCCTCGGCC] [+] EMBL BI794900 [TTCTCTTCCCGTGGCCCTTGCGTCGGCGGCGGAGGGATGGCGAAGGCCGGTGGGGGGATGATCTGGGCGACGGCGGAGGACCTGGCGCGGAGCCGGCCGGTGGTGCTGTCGCTGTACAGGCAGATCCTGCGGGCGCTGAACTCGCCGGCGCTGCCGCTGGGGCACGCGGCGCGGCTGGCGAAGAAGGCGGAGTGCCGCGCCATCTTCATCTTCGCCGCCGAGGAGAGGTCGATCCACAACATCCGCGACCTCCTCGACGCCGCGCGCCACACCCTCGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1850#0 ------TCCGGTGGTCG--GCGGCGA--GCCGAGGCGGCGGAGGGATGGGTGGGGGGATG 50 consensus_1850#1 TTCTCTTCCCGTGGCCCTTGCGTCGGCGGCGGAGGGATGGCGAAGGCCGGTGGGGGGATG 60 *** **** * *** ** ** **** * * ************ consensus_1850#0 ATCTGAGCGGCAGCGGAGGACCTGGCGCGGAGCCGGCCGGTGGCGCTGTCGCTGTACAGG 110 consensus_1850#1 ATCTGGGCGACGGCGGAGGACCTGGCGCGGAGCCGGCCGGTGGTGCTGTCGCTGTACAGG 120 ***** *** * ******************************* **************** consensus_1850#0 CGGATCCTGCGGGCGCTGAACTCGCCGGAGCTGCCGCTGGGGCACGCGGCGCGGCTGGCG 170 consensus_1850#1 CAGATCCTGCGGGCGCTGAACTCGCCGGCGCTGCCGCTGGGGCACGCGGCGCGGCTGGCG 180 * ************************** ******************************* consensus_1850#0 AAGAAGGCGGAGTGCCGCGCCATCTTCGTCTTCGGCGCCGAGGAGAGGTCGCTCCACAAC 230 consensus_1850#1 AAGAAGGCGGAGTGCCGCGCCATCTTCATCTTCGCCGCCGAGGAGAGGTCGATCCACAAC 240 *************************** ****** **************** ******** consensus_1850#0 ATCCGCGACCTCGTCGACGCCGCGCGCCACACCCTCGGCCTCCTCCACCGCGGCCGCCTC 290 consensus_1850#1 ATCCGCGACCTCCTCGACGCCGCGCGCCACACCCTCGGCC-------------------- 280 ************ *************************** consensus_1850#0 CCTTGAGTTGGGAGAAGAAGCAAGCTCGCGAGCTACAGCTATGGTATTATTACGCGTCTA 350 consensus_1850#1 ------------------------------------------------------------ consensus_1850#0 TTTCAGTGTTTTTTTTCTTAGCCATTCTAGATTGTAAGATTCAGTTCGTCCCTGTGTGAC 410 consensus_1850#1 ------------------------------------------------------------ consensus_1850#0 ATGAACTGTGTTGGAGTGAACTAGTATATGCCCGATTTTAGATTTTTCTGCTATGTATGT 470 consensus_1850#1 ------------------------------------------------------------ consensus_1850#0 GTACCACGCATAACATATCTATTCCAAACCGAAAAACGGTTAGCATTATGAATTTATTTC 530 consensus_1850#1 ------------------------------------------------------------ consensus_1850#0 CACTGGAGTCAATTTGATGTTGTTCTTAGATTTGAGATGTAAAGTTCTCGATGGTACGAA 590 consensus_1850#1 ------------------------------------------------------------ consensus_1850#0 CTGATAAAA 599 consensus_1850#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||