These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 798 fasta sequence [GCGCCGAGCTGACTCTAGCGAGCTGGCAAAAGCCTTATTACCAGCAGTTCTGACTAAACTGATGGCTGCCAAGGAAAAACATCTGGAGGTCCTGGTTGGCCTTGCTTCGCAGATATGCAACGCCTTACCTGCCGTGTGTGCACCATTAATGCTGGGATCCGATCCCAACCTACTAACACCAGCACTCGTTCAGATGCTAGTCGATACACTCAACGCCCGCGAGAAGCCGATCCCTGAATGCCCCAGGATGAGAAGAGCAATAGTCGAGCTTGCAATTTCCATAGTGGAAATGTGTCCTCCCAAAGCAGCTATCTTCAGGGAGAAGGGGATGGTGGAGGCGCTGTCTAAGGTGGAGAGGACACCGTCCAGAGTGGAGAATTACTGGCTCTGCGATGAGGGGTTGGTTTTGGAGCGCGGATTGCCCATGCCTGATCTAGTCGCCAAGGCAAAACGGCTAATTGACTCTGCGTCTGCAGTTCTCCAGGAGATGAGCGTGGCCAACGTGCATGAATGAACCATATGTGAATNTTTATTATTTTATGTTTGGATCGAACTTTGGTGGGGACTGGATGCGGAGAGTTTACNTCTTGACTTTAGGTCACGGACAAGTTCAGGGATAGACGGGAGAGTACGTTTTCCCCGCTATTTTGAGAATGAGCTCAACCACGTTTTTCCCGGCTATTCTGAGAATGAGCTTCAACCCAAAATGCACTGATTAGTAAATGGTAAAAAAAANAANNNANNNNNNNNNNTNNNNNNNNNNGANANNNCCTCGGGGGGGGGCCGGGCCCAGTCCCC] [+] EMBL BE040452 [GCGCCGAGCTGACTCTAGCGAGCTGGCAAAAGCCTTATTACCAGCAGTTCTGACTAAACTGATGGCTGCCAAGGAAAAACATCTGGAGGTCCTGGTTGGCCTTGCTTCGCAGATATGCAACGCCTTACCTGCCGTGTGTGCACCATTAATGCTGGGATCCGATCCCAACCTACTAACACCAGCACTCGTTCAGATGCTAGTCGATACACTCAACGCCCGCGAGAAGCCGATCCCTGAATGCCCCAGGATGAGAAGAGCAATAGTCGAGCTTGCAATTTCCATAGTGGAAATGTGTCCTCCCAAAGCAGCTATCTTCAGGGAGAAGGGGATGGTGGAGGCGCTGTCTAAGGTGGAGAGGACACCGTCCAGAGTGGAGAATTACTGGCTCTGCGATGAGGGGTTGGTTTTGGAGCGCGGATTGCCCATGCCTGATCTAGTCGCCAAGGCAAAACGGCTAATTGACTCTGCGTCTGCAGTTCTCCAGGAGATGAGCGTGGCCAACGTGCATGAATGAACCATATGTGAATNTTTATTATTTTATGTTTGGATCGAACTTTGGTGGGGACTGGATGCGGAGAGTTTACNTCTTGACTTTAGGTCACGGACAAGTTCAGGGATAGACGGGAGAGTACGTTTTCCCCGCTATTTTGAGAATGAGCTCAACCACGTTTTTCCCGGCTATTCTGAGAATGAGCTTCAACCCAAAATGCACTGATTAGTAAATGGTAAAAAAAANAANNNANNNNNNNNNNTNNNNNNNNNNGANANNNCCTCGGGGGGGGGCCGGGCCCAGTCCCC] consensusID : consensus_1865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [GCGCCGAGCTGACTCTAGCGAGCTGGCAAAAGCCTTATTACCAGCAGTTCTGACTAAACTGATGGCTGCCAAGGAAAAACATCTGGAGGTCCTGGTTGGCCTTGCTTCGCAGATATGCAACGCCTTACCTGCCGTGTGTGCACCATTAATGCTGGGATCCGATCCCAACCTACTAACACCAGCACTCGTTCAGATGCTAGTCGATACACTCAACGCCCGCGAGAAGCCGATCCCTGAATGCCCCAGGATGAGAAGAGCAATAGTCGAGCTTGCAATTTCCATAGTGGAAATGTGTCCTCCCAAAGCAGCTATCTTCAGGGAGAAGGGGATGGTGGAGGCGCTGTCTAAGGTGGAGAGGACACCGTCCAGAGTGGAGAATTACTGGCTCTGCGATGAGGGGTTGGTTTTGGAGCGCGGATTGCCCATGCCTGATCTAGTCGCCAAGGCAAAACGGCTAATTGACTCTGCGTCTGCAGTTCTCCAGGAGATGAGCGTGGCCAACGTGCATGAATGAACCATATGTGAATTTTTATTATTTTATGTTTGTATCGAACTTTGGTGTGGACTGCATGCGGTAAGTTTTCGTCTTGACTTTAGGTCACGGACAAGTTCAGGGATAGACGGGAGAGTACGTTTTCCCCGCCTATTCTGAGAATGAGCTCGAACCACGTTTTCCCCGCCAAAAAAAA] [+] EMBL CA757327 [GCGCCGAGCTGACTCTAGCGAGCTGGCAAAAGCCTTATTACCAGCAGTTCTGACTAAACTGATGGCTGCCAAGGAAAAACATCTGGAGGTCCTGGTTGGCCTTGCTTCGCAGATATGCAACGCCTTACCTGCCGTGTGTGCACCATTAATGCTGGGATCCGATCCCAACCTACTAACACCAGCACTCGTTCAGATGCTAGTCGATACACTCAACGCCCGCGAGAAGCCGATCCCTGAATGCCCCAGGATGAGAAGAGCAATAGTCGAGCTTGCAATTTCCATAGTGGAAATGTGTCCTCCCAAAGCAGCTATCTTCAGGGAGAAGGGGATGGTGGAGGCGCTGTCTAAGGTGGAGAGGACACCGTCCAGAGTGGAGAATTACTGGCTCTGCGATGAGGGGTTGGTTTTGGAGCGCGGATTGCCCATGCCTGATCTAGTCGCCAAGGCAAAACGGCTAATTGACTCTGCGTCTGCAGTTCTCCAGGAGATGAGCGTGGCCAACGTGCATGAATGAACCATATGTGAATTTTTATTATTTTATGTTTGTATCGAACTTTGGTGTGGACTGCATGCGGTAAGTTTTCGTCTTGACTTTAGGTCACGGACAAGTTCAGGGATAGACGGGAGAGTACGTTTTCCCCGCCTATTCTGAGAATGAGCTCGAACCACGTTTTCCCCGCCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1865#0 GCGCCGAGCTGACTCTAGCGAGCTGGCAAAAGCCTTATTACCAGCAGTTCTGACTAAACT 60 consensus_1865#1 GCGCCGAGCTGACTCTAGCGAGCTGGCAAAAGCCTTATTACCAGCAGTTCTGACTAAACT 60 ************************************************************ consensus_1865#0 GATGGCTGCCAAGGAAAAACATCTGGAGGTCCTGGTTGGCCTTGCTTCGCAGATATGCAA 120 consensus_1865#1 GATGGCTGCCAAGGAAAAACATCTGGAGGTCCTGGTTGGCCTTGCTTCGCAGATATGCAA 120 ************************************************************ consensus_1865#0 CGCCTTACCTGCCGTGTGTGCACCATTAATGCTGGGATCCGATCCCAACCTACTAACACC 180 consensus_1865#1 CGCCTTACCTGCCGTGTGTGCACCATTAATGCTGGGATCCGATCCCAACCTACTAACACC 180 ************************************************************ consensus_1865#0 AGCACTCGTTCAGATGCTAGTCGATACACTCAACGCCCGCGAGAAGCCGATCCCTGAATG 240 consensus_1865#1 AGCACTCGTTCAGATGCTAGTCGATACACTCAACGCCCGCGAGAAGCCGATCCCTGAATG 240 ************************************************************ consensus_1865#0 CCCCAGGATGAGAAGAGCAATAGTCGAGCTTGCAATTTCCATAGTGGAAATGTGTCCTCC 300 consensus_1865#1 CCCCAGGATGAGAAGAGCAATAGTCGAGCTTGCAATTTCCATAGTGGAAATGTGTCCTCC 300 ************************************************************ consensus_1865#0 CAAAGCAGCTATCTTCAGGGAGAAGGGGATGGTGGAGGCGCTGTCTAAGGTGGAGAGGAC 360 consensus_1865#1 CAAAGCAGCTATCTTCAGGGAGAAGGGGATGGTGGAGGCGCTGTCTAAGGTGGAGAGGAC 360 ************************************************************ consensus_1865#0 ACCGTCCAGAGTGGAGAATTACTGGCTCTGCGATGAGGGGTTGGTTTTGGAGCGCGGATT 420 consensus_1865#1 ACCGTCCAGAGTGGAGAATTACTGGCTCTGCGATGAGGGGTTGGTTTTGGAGCGCGGATT 420 ************************************************************ consensus_1865#0 GCCCATGCCTGATCTAGTCGCCAAGGCAAAACGGCTAATTGACTCTGCGTCTGCAGTTCT 480 consensus_1865#1 GCCCATGCCTGATCTAGTCGCCAAGGCAAAACGGCTAATTGACTCTGCGTCTGCAGTTCT 480 ************************************************************ consensus_1865#0 CCAGGAGATGAGCGTGGCCAACGTGCATGAATGAACCATATGTGAATNTTTATTATTTTA 540 consensus_1865#1 CCAGGAGATGAGCGTGGCCAACGTGCATGAATGAACCATATGTGAATTTTTATTATTTTA 540 *********************************************** ************ consensus_1865#0 TGTTTGGATCGAACTTTGGTGGGGACTGGATGCGGAGAGTTTACNTCTTGACTTTAGGTC 600 consensus_1865#1 TGTTTGTATCGAACTTTGGTGTGGACTGCATGCGGTAAGTTTTCGTCTTGACTTTAGGTC 600 ****** ************** ****** ****** ***** * *************** consensus_1865#0 ACGGACAAGTTCAGGGATAGACGGGAGAGTACGTTTTCCCCGC-TATTTTGAGAATGAGC 659 consensus_1865#1 ACGGACAAGTTCAGGGATAGACGGGAGAGTACGTTTTCCCCGCCTATTCTGAGAATGAGC 660 ******************************************* **** *********** consensus_1865#0 TC-AACCACGTTTTTCCCGGCTATTCTGAGAATGAGCTTCAACCCAAAATGCACTGATTA 718 consensus_1865#1 TCGAACCACGTTTTCCCCGCCAAAAAAAA------------------------------- 689 ** *********** **** * * * consensus_1865#0 GTAAATGGTAAAAAAAANAANNNANNNNNNNNNNTNNNNNNNNNNGANANNNCCTCGGGG 778 consensus_1865#1 ------------------------------------------------------------ consensus_1865#0 GGGGGCCGGGCCCAGTCCCC 798 consensus_1865#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||