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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1875#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence
[TTTTTTTTTGATAGATGAACACAGTACATGTTCACAGTTTGTTTCATTTCTCCACTTTTGACAGTGAGGTTGGATCAAGCTGGGCAAGCAATTCAACAGCAGCAGCATCAGTGGCTGGCATGAACAGGTCAGAGAGACATAATCACATAAATCGAGCCTTGATTGAACTAGCCGCTGCCACTACCAATTAATCAGCTAACTAATCTGCTTATCTGCTGCTGCTAATTACACATCGAGCCTTGATTGAACAGCAGCAGCATCAGTGACTGGAATGGACAGATCAGACAAGCACAGAGCCTTTTGATTGAACTAGCTAAGCCAGTGCTACAACTACTGATCAGCTAACTAATTAATCTTCTGCTAATCTAGTGCTCTGAGCTGTTCATGCAGATGTTGCAGGTTCATCTCCTTCCCAGCAACGGGAGAAATCAAGAACCAACTATAAGCTCTGCCTAGCTCGACGCCGGCAACGGCAAGCCTGGGGGNNNNNNNNNNNNNNCNCNNNCNNCCACNCGNCCCANCGCNCCGCGCGCNGCGGGGCGCGGGCCGCCGCCCCGGCCCCCGCGCGCGGCCCAGCCGCGGGGCGGGGGCCCCCGGCCGGCGCGGGGACGGACCCGGGCCAGCACCGCCACCGAGACGCAGAGACGGGCAGCGGACGGCC]
[+] EMBL CA760868 [TTTTTTTTTGATAGATGAACACAGTACATGTTCACAGTTTGTTTCATTTCTCCACTTTTGACAGTGAGGTTGGATCAAGCTGGGCAAGCAATTCAACAGCAGCAGCATCAGTGGCTGGCATGAACAGGTCAGAGAGACATAATCACATAAATCGAGCCTTGATTGAACTAGCCGCTGCCACTACCAATTAATCAGCTAACTAATCTGCTTATCTGCTGCTGCTAATTACACATCGAGCCTTGATTGAACAGCAGCAGCATCAGTGACTGGAATGGACAGATCAGACAAGCACAGAGCCTTTTGATTGAACTAGCTAAGCCAGTGCTACAACTACTGATCAGCTAACTAATTAATCTTCTGCTAATCTAGTGCTCTGAGCTGTTCATGCAGATGTTGCAGGTTCATCTCCTTCCCAGCAACGGGAGAAATCAAGAACCAACTATAAGCTCTGCCTAGCTCGACGCCGGCAACGGCAAGCCTGGGGGNNNNNNNNNNNNNNCNCNNNCNNCCACNCGNCCCANCGCNCCGCGCGCNGCGGGGCGCGGGCCGCCGCCCCGGCCCCCGCGCGCGGCCCAGCCGCGGGGCGGGGGCCCCCGGCCGGCGCGGGGACGGACCCGGGCCAGCACCGCCACCGAGACGCAGAGACGGGCAGCGGACGGCC]
consensusID : consensus_1875#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence
[TTTTTTTTTAATCACATAAATCGAGCCTTGATTGAACTAGCTGGTGCACTACAATTAATCAGCTAACTAATCTGTTATCTGCTGTGCTAATTACACATCGAGCCTTGATTGAACAGCAGCAGCATCAGTGACTGGAATGGACAGATCAGACAAGCACAGAGCCTTTGGATTGAACTAGCTAAGCTAGTGCTACAACTACTGATCAGCTAACTAATTAATCTTCTGCTAATCTAGTGCTCTGAGCTTGTTCATGCAGATGTTGCAGGTTCATCTCCTTCCCAGCAACGGGAGAAATCAAGAACCAACTATAAGCTCTGCTAGCTCGACGCCGGGACGGGAGCCTGGGGTTGATCGATCCATCGGGGGAGAGGCGACACAGTTCTCCTTCCGATCCGGTCACCGTGACGGCGGCGCGGAGGAGGAGACGCGGACGGGGGGGCGGGGCCCGTGCGAGCGCGAGTCCGGAGGCGCCCGCGCGTGCGGGCACGCCG]
[-] EMBL BI806650 [TTTTTTTTTAATCACATAAATCGAGCCTTGATTGAACTAGCTGGTGCACTACAATTAATCAGCTAACTAATCTGTTATCTGCTGTGCTAATTACACATCGAGCCTTGATTGAACAGCAGCAGCATCAGTGACTGGAATGGACAGATCAGACAAGCACAGAGCCTTTGGATTGAACTAGCTAAGCTAGTGCTACAACTACTGATCAGCTAACTAATTAATCTTCTGCTAATCTAGTGCTCTGAGCTTGTTCATGCAGATGTTGCAGGTTCATCTCCTTCCCAGCAACGGGAGAAATCAAGAACCAACTATAAGCTCTGCTAGCTCGACGCCGGGACGGGAGCCTGGGGTTGATCGATCCATCGGGGGAGAGGCGACACAGTTCTCCTTCCGATCCGGTCACCGTGACGGCGGCGCGGAGGAGGAGACGCGGACGGGGGGGCGGGGCCCGTGCGAGCGCGAGTCCGGAGGCGCCCGCGCGTGCGGGCACGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1875#0 TTTTTTTTTGATAGATGAACACAGTACATGTTCACAGTTTGTTTCATTTCTCCACTTTTG 60
consensus_1875#1 ------------------------------------------------------------
consensus_1875#0 ACAGTGAGGTTGGATCAAGCTGGGCAAGCAATTCAACAGCAGCAGCATCAGTGGCTGGCA 120
consensus_1875#1 ------------------------------------------------------------
consensus_1875#0 TGAACAGGTCAGAGAGACATAATCACATAAATCGAGCCTTGATTGAACTAGCCGCTGCCA 180
consensus_1875#1 -----------TTTTTTTTTAATCACATAAATCGAGCCTTGATTGAACTAGCTGGTGC-A 48
********************************* * *** *
consensus_1875#0 CTACCAATTAATCAGCTAACTAATCTGCTTATCTGCTGCTGCTAATTACACATCGAGCCT 240
consensus_1875#1 CTAC-AATTAATCAGCTAACTAATCTG-TTATCTGCTG-TGCTAATTACACATCGAGCCT 105
**** ********************** ********** *********************
consensus_1875#0 TGATTGAACAGCAGCAGCATCAGTGACTGGAATGGACAGATCAGACAAGCACAGAGCCTT 300
consensus_1875#1 TGATTGAACAGCAGCAGCATCAGTGACTGGAATGGACAGATCAGACAAGCACAGAGCCTT 165
************************************************************
consensus_1875#0 TTGATTGAACTAGCTAAGCCAGTGCTACAACTACTGATCAGCTAACTAATTAATCTTCTG 360
consensus_1875#1 TGGATTGAACTAGCTAAGCTAGTGCTACAACTACTGATCAGCTAACTAATTAATCTTCTG 225
* ***************** ****************************************
consensus_1875#0 CTAATCTAGTGCTCTGAGCT-GTTCATGCAGATGTTGCAGGTTCATCTCCTTCCCAGCAA 419
consensus_1875#1 CTAATCTAGTGCTCTGAGCTTGTTCATGCAGATGTTGCAGGTTCATCTCCTTCCCAGCAA 285
******************** ***************************************
consensus_1875#0 CGGGAGAAATCAAGAACCAACTATAAGCTCTGCCTAGCTCGACGCCGGCAACGGCAAGCC 479
consensus_1875#1 CGGGAGAAATCAAGAACCAACTATAAGCTCTGC-TAGCTCGACGCCGG-GACGG-GAGCC 342
********************************* ************** **** ****
consensus_1875#0 TGGGGGNNNNNNNNNNNNNNCNCNNNCNNCCACNCGNCCCANCGCNCCGCGCGCNGCGGG 539
consensus_1875#1 TGGGGTTGATCGATCCATCGGGGGAG-----AGGCGACACAGTTCTCCTTCCGATCCGGT 397
***** * ** * ** * ** ** ***
consensus_1875#0 GCGCGGGCCGCCGCCCCGGCCCCCGCGCGCGGCCCAGCCGCGGGGCGGGGGCCCCCGGCC 599
consensus_1875#1 CACCGTGACGGCGGCGCGG----AGGAGGAGACGCGGACGGGGGGGCGGGGCCCGTG-CG 452
** * ** ** * *** * * * * * * ** **** ******* * *
consensus_1875#0 GGCGCGGGGACGGACCCGGGCCAGCACCGCCACCGAGACGCAGAGACGGGCAGCGGACGG 659
consensus_1875#1 AGCGCGAGTCCGGAGGCG--CCCGCGCG--TGCGGGCACGCCG----------------- 491
***** * **** ** ** ** * * * **** *
consensus_1875#0 CC 661
consensus_1875#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||