These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2590 fasta sequence [CTCGTCGGCGGCGGAGCTCCGGCCAACCCACGGCGGCGGGCCGGGACAAGGTAGCGGAGATGATGCACCGAAGTTTACCCGGCGGCGGCGGCGGCAGCACATCAGCTGGTGAAGGGGGAGGAGGAATTGAAGGATGGGGATTCGAAGAAAGTACGGCGCGGCTGCTGCCCTAGGCGAAGGCGTTGGGCTCTCCGTGGCAAGAACGCCGCCGGTCGCGACCACCATCTGGCGGTATCCCGGGCGGCAGCAGAGTACCAGACTGCAATCCTGGCTGCTGAGGTAACATTTTGTGGTTTTAACAAGGGAAAATTCGAGTTGAGAAGCACGATATTTTTCGTACTGAATTTTCTGTGCATCTGTGGCTTAAGATTTTACAGCGACGAGAAATTATCCGTGAATTAGATTTGAGATGACAGATGATAGACCACATGCCTGAGCATTATCCAACATTTCATATGGATAGTCACAAGGGGTGAAGCACAATTGTGTTATTGGCATCAATAGTTGATGAAAAACGATTATGTGATTAGATCAGTTATGGTCATACAGCATAAGATGCTCAATGCTTAGGGAGTGCCATTTGATTTCTTAGTCAATTGCTGAATATACTGGCAGCAAATGGAAGACAACGAATGTTCAAGCACCGAGTCGAAAAATTCTTTGGATTTTGAACTAACTTAGATTTGTATATGCAGGGCACAGATGCAACTTGTGAAGATATATTTGTTTATCTTTCAGGTTCTATTTCTCAGGTTTTATCTGATAATGTTCACAAGTAGAATGAAATTATTATCTTTCATCTAGAACTGTTATATACTGCATCGTTGATTACATGCAAAATAAATCTTAGAGAAAAAAGGAAAATAGGCGGAGAACAACAGTGTCCCCAAGACCCAAACATCCCACAGGACCTGGAAACATACAATTGGCGTACCATGTAACTGATGCTATTCTGTTCTTCCTTCAAATAGCTTCATCAATTGTGCCTTCAGCAGCTCAGGGGTATACCACTCATGCTTTCTCTTAGCCTTCATATACTTGTCAAGGTGTGCTTGGTAAGCCAAGATTACCTTGTCACAGACAGCTCGCCGCACTTTCTCCCGAAGCTGAGGATCTTCCACCTTCCAGCACTCTTGGTTATAATAAGTTGAATCGAACTGGAGGCTAAACCTTACGGTACTGGAAGGCTGACTGAAGCAGCCACCAAGCATGCCTGTCCTGGCACTGAGGCATGATATTGCAGGCCCCCATGACAAGTCCACATAAGTCTTCAAATACTGCTCGATGAATTCTCTGTGCACTTGAACCCATGACTGCCCTAGGAGTGAGATCAGCTCTGAACCCTCCACTTGCTTGACAACAAAATGCAGGTTGTTCATAAGAAAGAAGCATTGTAAACCTTGAGATTCATAGGCCTCAGGTGCCTTGTTGAGCATGGATTCCAAGCAGATAATCAGATCTTGCACAATATGATCCAGGGAGTCCATCCGCTCATTGTCCTTGTTGCGATCATCGTTTCCGAGGATGAGACCAAGTGTGGTCTTATGATGCAACAACAACCTGATGTAATTCATGACATAGCGAGTCACTTCATGGATTCCCCCACCTGGTGGTACACGCCTAGAAGCACGGGTTTGGATCAAAATTTTAAGCTCACGAAGCATGTGGTACACGGCCATCCTTAGCTTCTGCAGCGTGTCATCATACTTTGCCACGCTGAACTCTTCTGGACGACATTGCGATACAAGGAAGAAGTCTGGGTTGAGTACCCTTGAGCAGCCTCAGCACCACGAAGAGCTTGTCAGGGGACAATTGTAGCTTGGTGATCTCATCTGCAAAGGCGAGAAGTCGAAGCTTGTATGACCATACGAGTGCATGCTGCCTTCCTGCCTTGCTGTGGATCTCCTTCACCATCGCATCAATCTCTCTCTGCGCCATGTGCCACTGTGACGCTGCAGCCATGTGGTGACCTCCTCTGATGTTGATGATCATTTCGGTGATGTTTTTGCAGGTGTTGGGATCAATTTCTTCAGAGCCGACATTGCTGGAGCCAGAGGCAGATGTCGATGACTCCACGGCACTGGTGGGGAACATGAACGACTCACCGCTAGAGATTGGGGAGGCTGCCATGGTCTGAATTTCTGGAGCTACTAACACTATTTCGTATCTGCAGTTTCTGTTCATGTGATTTGCACATTGTTGTACGGAGATCAAAGGCCTATTCAGTGGTTATAGAGTTGACACTACATTATGGTAATGACTCCGCGTGGAAGAAAAGTCAGAGTTATTTAGTTGATGAAGGGAGTGTTCTCCGTGTGGAAACTAAGACAGCTTACTGAGACCACAAATTGGAACAGATTATACAACACCATATTGTGGTCTCCCTGCTAGCTGGCCCAAAATTGTGTTTGACAAAATGACATAACTGAAAGCGAAAGCCCTTGTCAGAACGCGTGAGTCGTTTTGCTATCTATCTGTCTTTGCTGTATTTTTCCACGAATTGTTGTATCTTTGATTGTTTGGAGGATAAGACATTGCAACTACAGGTAAACACCCTTTCTTCCCTGAATCTACCAGTTTATTTCTTGAG] [+] EMBL AK073034 [CTCGTCGGCGGCGGAGCTCCGGCCAACCCACGGCGGCGGGCCGGGACAAGGTAGCGGAGATGATGCACCGAAGTTTACCCGGCGGCGGCGGCGGCAGCACATCAGCTGGTGAAGGGGGAGGAGGAATTGAAGGATGGGGATTCGAAGAAAGTACGGCGCGGCTGCTGCCCTAGGCGAAGGCGTTGGGCTCTCCGTGGCAAGAACGCCGCCGGTCGCGACCACCATCTGGCGGTATCCCGGGCGGCAGCAGAGTACCAGACTGCAATCCTGGCTGCTGAGGTAACATTTTGTGGTTTTAACAAGGGAAAATTCGAGTTGAGAAGCACGATATTTTTCGTACTGAATTTTCTGTGCATCTGTGGCTTAAGATTTTACAGCGACGAGAAATTATCCGTGAATTAGATTTGAGATGACAGATGATAGACCACATGCCTGAGCATTATCCAACATTTCATATGGATAGTCACAAGGGGTGAAGCACAATTGTGTTATTGGCATCAATAGTTGATGAAAAACGATTATGTGATTAGATCAGTTATGGTCATACAGCATAAGATGCTCAATGCTTAGGGAGTGCCATTTGATTTCTTAGTCAATTGCTGAATATACTGGCAGCAAATGGAAGACAACGAATGTTCAAGCACCGAGTCGAAAAATTCTTTGGATTTTGAACTAACTTAGATTTGTATATGCAGGGCACAGATGCAACTTGTGAAGATATATTTGTTTATCTTTCAGGTTCTATTTCTCAGGTTTTATCTGATAATGTTCACAAGTAGAATGAAATTATTATCTTTCATCTAGAACTGTTATATACTGCATCGTTGATTACATGCAAAATAAATCTTAGAGAAAAAAGGAAAATAGGCGGAGAACAACAGTGTCCCCAAGACCCAAACATCCCACAGGACCTGGAAACATACAATTGGCGTACCATGTAACTGATGCTATTCTGTTCTTCCTTCAAATAGCTTCATCAATTGTGCCTTCAGCAGCTCAGGGGTATACCACTCATGCTTTCTCTTAGCCTTCATATACTTGTCAAGGTGTGCTTGGTAAGCCAAGATTACCTTGTCACAGACAGCTCGCCGCACTTTCTCCCGAAGCTGAGGATCTTCCACCTTCCAGCACTCTTGGTTATAATAAGTTGAATCGAACTGGAGGCTAAACCTTACGGTACTGGAAGGCTGACTGAAGCAGCCACCAAGCATGCCTGTCCTGGCACTGAGGCATGATATTGCAGGCCCCCATGACAAGTCCACATAAGTCTTCAAATACTGCTCGATGAATTCTCTGTGCACTTGAACCCATGACTGCCCTAGGAGTGAGATCAGCTCTGAACCCTCCACTTGCTTGACAACAAAATGCAGGTTGTTCATAAGAAAGAAGCATTGTAAACCTTGAGATTCATAGGCCTCAGGTGCCTTGTTGAGCATGGATTCCAAGCAGATAATCAGATCTTGCACAATATGATCCAGGGAGTCCATCCGCTCATTGTCCTTGTTGCGATCATCGTTTCCGAGGATGAGACCAAGTGTGGTCTTATGATGCAACAACAACCTGATGTAATTCATGACATAGCGAGTCACTTCATGGATTCCCCCACCTGGTGGTACACGCCTAGAAGCACGGGTTTGGATCAAAATTTTAAGCTCACGAAGCATGTGGTACACGGCCATCCTTAGCTTCTGCAGCGTGTCATCATACTTTGCCACGCTGAACTCTTCTGGACGACATTGCGATACAAGGAAGAAGTCTGGGTTGAGTACCCTTGAGCAGCCTCAGCACCACGAAGAGCTTGTCAGGGGACAATTGTAGCTTGGTGATCTCATCTGCAAAGGCGAGAAGTCGAAGCTTGTATGACCATACGAGTGCATGCTGCCTTCCTGCCTTGCTGTGGATCTCCTTCACCATCGCATCAATCTCTCTCTGCGCCATGTGCCACTGTGACGCTGCAGCCATGTGGTGACCTCCTCTGATGTTGATGATCATTTCGGTGATGTTTTTGCAGGTGTTGGGATCAATTTCTTCAGAGCCGACATTGCTGGAGCCAGAGGCAGATGTCGATGACTCCACGGCACTGGTGGGGAACATGAACGACTCACCGCTAGAGATTGGGGAGGCTGCCATGGTCTGAATTTCTGGAGCTACTAACACTATTTCGTATCTGCAGTTTCTGTTCATGTGATTTGCACATTGTTGTACGGAGATCAAAGGCCTATTCAGTGGTTATAGAGTTGACACTACATTATGGTAATGACTCCGCGTGGAAGAAAAGTCAGAGTTATTTAGTTGATGAAGGGAGTGTTCTCCGTGTGGAAACTAAGACAGCTTACTGAGACCACAAATTGGAACAGATTATACAACACCATATTGTGGTCTCCCTGCTAGCTGGCCCAAAATTGTGTTTGACAAAATGACATAACTGAAAGCGAAAGCCCTTGTCAGAACGCGTGAGTCGTTTTGCTATCTATCTGTCTTTGCTGTATTTTTCCACGAATTGTTGTATCTTTGATTGTTTGGAGGATAAGACATTGCAACTACAGGTAAACACCCTTTCTTCCCTGAATCTACCAGTTTATTTCTTGAG] consensusID : consensus_1877#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [TGGGCAACTTTGTCTGACTCCCCGNTAGAGATTGGGGAGCTCCCCTGGTCTGAATTTCTGGAGCTNCTACCCCTATTTCGTATCTCCAGTTTCTGTTCATGTGATTNGCACCACTTGTTGTACGGAGATCCNAAGGCCTATTCACGTGGTTATAGAGTTGACACCTACCACTTATGGTAATGACTCCCGCCGTGGAAGAAAAGTCAGAGTTATTTAGTTGATGAAGGGAGTGTTCTCCCGCTGTGGAAACTAAGACCAGCTTACTGAGACCCCCAAATGTGGACACCAGATTATCCCAACCACCCATATTGTGGTCTCCCTGCTAGCTGGCCCCAAATTGTGTTTGACCAAATGACATAACTGAAAGCGAAAGCCCTTGTCATAACGCGTGAGTCGTTTTGCTATCTATCTGTCTTTCCTGTATTTTTCCCCGAATCGTTGTATCTTTGATTGTTTGGAGGATAAGACCTTGCAACTACCCGGTAAAAAAAAAA] [+] EMBL BM038038 [TGGGCAACTTTGTCTGACTCCCCGNTAGAGATTGGGGAGCTCCCCTGGTCTGAATTTCTGGAGCTNCTACCCCTATTTCGTATCTCCAGTTTCTGTTCATGTGATTNGCACCACTTGTTGTACGGAGATCCNAAGGCCTATTCACGTGGTTATAGAGTTGACACCTACCACTTATGGTAATGACTCCCGCCGTGGAAGAAAAGTCAGAGTTATTTAGTTGATGAAGGGAGTGTTCTCCCGCTGTGGAAACTAAGACCAGCTTACTGAGACCCCCAAATGTGGACACCAGATTATCCCAACCACCCATATTGTGGTCTCCCTGCTAGCTGGCCCCAAATTGTGTTTGACCAAATGACATAACTGAAAGCGAAAGCCCTTGTCATAACGCGTGAGTCGTTTTGCTATCTATCTGTCTTTCCTGTATTTTTCCCCGAATCGTTGTATCTTTGATTGTTTGGAGGATAAGACCTTGCAACTACCCGGTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1877#0 CTCGTCGGCGGCGGAGCTCCGGCCAACCCACGGCGGCGGGCCGGGACAAGGTAGCGGAGA 60 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 TGATGCACCGAAGTTTACCCGGCGGCGGCGGCGGCAGCACATCAGCTGGTGAAGGGGGAG 120 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 GAGGAATTGAAGGATGGGGATTCGAAGAAAGTACGGCGCGGCTGCTGCCCTAGGCGAAGG 180 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 CGTTGGGCTCTCCGTGGCAAGAACGCCGCCGGTCGCGACCACCATCTGGCGGTATCCCGG 240 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 GCGGCAGCAGAGTACCAGACTGCAATCCTGGCTGCTGAGGTAACATTTTGTGGTTTTAAC 300 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 AAGGGAAAATTCGAGTTGAGAAGCACGATATTTTTCGTACTGAATTTTCTGTGCATCTGT 360 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 GGCTTAAGATTTTACAGCGACGAGAAATTATCCGTGAATTAGATTTGAGATGACAGATGA 420 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 TAGACCACATGCCTGAGCATTATCCAACATTTCATATGGATAGTCACAAGGGGTGAAGCA 480 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 CAATTGTGTTATTGGCATCAATAGTTGATGAAAAACGATTATGTGATTAGATCAGTTATG 540 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 GTCATACAGCATAAGATGCTCAATGCTTAGGGAGTGCCATTTGATTTCTTAGTCAATTGC 600 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 TGAATATACTGGCAGCAAATGGAAGACAACGAATGTTCAAGCACCGAGTCGAAAAATTCT 660 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 TTGGATTTTGAACTAACTTAGATTTGTATATGCAGGGCACAGATGCAACTTGTGAAGATA 720 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 TATTTGTTTATCTTTCAGGTTCTATTTCTCAGGTTTTATCTGATAATGTTCACAAGTAGA 780 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 ATGAAATTATTATCTTTCATCTAGAACTGTTATATACTGCATCGTTGATTACATGCAAAA 840 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 TAAATCTTAGAGAAAAAAGGAAAATAGGCGGAGAACAACAGTGTCCCCAAGACCCAAACA 900 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 TCCCACAGGACCTGGAAACATACAATTGGCGTACCATGTAACTGATGCTATTCTGTTCTT 960 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 CCTTCAAATAGCTTCATCAATTGTGCCTTCAGCAGCTCAGGGGTATACCACTCATGCTTT 1020 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 CTCTTAGCCTTCATATACTTGTCAAGGTGTGCTTGGTAAGCCAAGATTACCTTGTCACAG 1080 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 ACAGCTCGCCGCACTTTCTCCCGAAGCTGAGGATCTTCCACCTTCCAGCACTCTTGGTTA 1140 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 TAATAAGTTGAATCGAACTGGAGGCTAAACCTTACGGTACTGGAAGGCTGACTGAAGCAG 1200 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 CCACCAAGCATGCCTGTCCTGGCACTGAGGCATGATATTGCAGGCCCCCATGACAAGTCC 1260 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 ACATAAGTCTTCAAATACTGCTCGATGAATTCTCTGTGCACTTGAACCCATGACTGCCCT 1320 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 AGGAGTGAGATCAGCTCTGAACCCTCCACTTGCTTGACAACAAAATGCAGGTTGTTCATA 1380 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 AGAAAGAAGCATTGTAAACCTTGAGATTCATAGGCCTCAGGTGCCTTGTTGAGCATGGAT 1440 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 TCCAAGCAGATAATCAGATCTTGCACAATATGATCCAGGGAGTCCATCCGCTCATTGTCC 1500 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 TTGTTGCGATCATCGTTTCCGAGGATGAGACCAAGTGTGGTCTTATGATGCAACAACAAC 1560 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 CTGATGTAATTCATGACATAGCGAGTCACTTCATGGATTCCCCCACCTGGTGGTACACGC 1620 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 CTAGAAGCACGGGTTTGGATCAAAATTTTAAGCTCACGAAGCATGTGGTACACGGCCATC 1680 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 CTTAGCTTCTGCAGCGTGTCATCATACTTTGCCACGCTGAACTCTTCTGGACGACATTGC 1740 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 GATACAAGGAAGAAGTCTGGGTTGAGTACCCTTGAGCAGCCTCAGCACCACGAAGAGCTT 1800 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 GTCAGGGGACAATTGTAGCTTGGTGATCTCATCTGCAAAGGCGAGAAGTCGAAGCTTGTA 1860 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 TGACCATACGAGTGCATGCTGCCTTCCTGCCTTGCTGTGGATCTCCTTCACCATCGCATC 1920 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 AATCTCTCTCTGCGCCATGTGCCACTGTGACGCTGCAGCCATGTGGTGACCTCCTCTGAT 1980 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 GTTGATGATCATTTCGGTGATGTTTTTGCAGGTGTTGGGATCAATTTCTTCAGAGCCGAC 2040 consensus_1877#1 ------------------------------------------------------------ consensus_1877#0 ATTGCTGGAGCCAGAGGCAGATGTCGATGACTCCACGGCACTGGTGGGGAACATGAAC-G 2099 consensus_1877#1 --------------------------------------------TGGGCAACTTTGTCTG 16 **** *** * * * consensus_1877#0 ACTCACCGCTAGAGATTGGGGAGGCTGCCATGGTCTGAATTTCTGGAGCTACTAACACTA 2159 consensus_1877#1 ACTCCCCGNTAGAGATTGGGGAG-CTCCCCTGGTCTGAATTTCTGGAGCTNCTACCCCTA 75 **** *** ************** ** ** ******************** *** * *** consensus_1877#0 TTTCGTATCTGCAGTTTCTGTTCATGTGATTTGCACA--TTGTTGTACGGAGATC-AAAG 2216 consensus_1877#1 TTTCGTATCTCCAGTTTCTGTTCATGTGATTNGCACCACTTGTTGTACGGAGATCCNAAG 135 ********** ******************** **** **************** *** consensus_1877#0 GCCTATTCA-GTGGTTATAGAGTTGACAC-TACA--TTATGGTAATGACTCCG--CGTGG 2270 consensus_1877#1 GCCTATTCACGTGGTTATAGAGTTGACACCTACCACTTATGGTAATGACTCCCGCCGTGG 195 ********* ******************* *** **************** ***** consensus_1877#0 AAGAAAAGTCAGAGTTATTTAGTTGATGAAGGGAGTGTTCTCCG--TGTGGAAACTAAGA 2328 consensus_1877#1 AAGAAAAGTCAGAGTTATTTAGTTGATGAAGGGAGTGTTCTCCCGCTGTGGAAACTAAGA 255 ******************************************* ************** consensus_1877#0 C-AGCTTACTGAGACCACAAATTGGAA----CAGATTATAC-AACA--CCATATTGTGGT 2380 consensus_1877#1 CCAGCTTACTGAGACCCCCAAATGTGGACACCAGATTATCCCAACCACCCATATTGTGGT 315 * ************** * ** ** ******** * *** ************ consensus_1877#0 CTCCCTGCTAGCTGGCCCAAAATTGTGTTTGACAAAATGACATAACTGAAAGCGAAAGCC 2440 consensus_1877#1 CTCCCTGCTAGCTGGCCCCAAATTGTGTTTGACCAAATGACATAACTGAAAGCGAAAGCC 375 ****************** ************** ************************** consensus_1877#0 CTTGTCAGAACGCGTGAGTCGTTTTGCTATCTATCTGTCTTTGCTGTATTTTTCCACGAA 2500 consensus_1877#1 CTTGTCATAACGCGTGAGTCGTTTTGCTATCTATCTGTCTTTCCTGTATTTTTCCCCGAA 435 ******* ********************************** ************ **** consensus_1877#0 TTGTTGTATCTTTGATTGTTTGGAGGATAAGACATTGCAACTACA-GGTAAACACCCTTT 2559 consensus_1877#1 TCGTTGTATCTTTGATTGTTTGGAGGATAAGACCTTGCAACTACCCGGTAAAAAAAAAA- 494 * ******************************* ********** ****** * consensus_1877#0 CTTCCCTGAATCTACCAGTTTATTTCTTGAG 2590 consensus_1877#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||