These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1890#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [CCCCACCTTGACCTAGATGAACTCCGCCAGATTCCGCCGCTTTACGGGTGAGCTCGAGCACCGCTTGCCCGAGCAGTCGATTGTCTCGAGCTCGCCACCACTGATCAAGCGCCTTGCCGCTGAGTTGGAGCTGATGCATGGTTCAGCTCGTGCAAATTAATCAATGTCCAGCTGCATCAAAGTGCATGAGCTTGGATCGAGAAGGTCCATGATGTGATCGATGCTAACATCGTCAAGTATTACGCCAACCTGTGGATCCAATCCAGCCCGTGTGACTTGATTTTGTTCAGCCATCAGAGGGATCTGTGGACTCAGCAGGATTTGATGATGATGATGATGATGATGATGGGGGCAGAAGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATTCTGCAATTGTGATGGCATTGGTTCAGGAATCGGGAGTTCATCATGGTGCCAAGATTTGGGAGAGTTCTTGTTAGTGTGGAGGCGCAATCCGGTGTAGATGAAAATAAAAACAACTGTGTATTTGTACTT] [+] EMBL CA753649 [CCCCACCTTGACCTAGATGAACTCCGCCAGATTCCGCCGCTTTACGGGTGAGCTCGAGCACCGCTTGCCCGAGCAGTCGATTGTCTCGAGCTCGCCACCACTGATCAAGCGCCTTGCCGCTGAGTTGGAGCTGATGCATGGTTCAGCTCGTGCAAATTAATCAATGTCCAGCTGCATCAAAGTGCATGAGCTTGGATCGAGAAGGTCCATGATGTGATCGATGCTAACATCGTCAAGTATTACGCCAACCTGTGGATCCAATCCAGCCCGTGTGACTTGATTTTGTTCAGCCATCAGAGGGATCTGTGGACTCAGCAGGATTTGATGATGATGATGATGATGATGATGGGGGCAGAAGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATTCTGCAATTGTGATGGCATTGGTTCAGGAATCGGGAGTTCATCATGGTGCCAAGATTTGGGAGAGTTCTTGTTAGTGTGGAGGCGCAATCCGGTGTAGATGAAAATAAAAACAACTGTGTATTTGTACTT] consensusID : consensus_1890#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [ATTTGGTTCCTTCATCCTGAATTTTATCCGCTGGTAATAGTTTCCATCCAAAAATTCAAAGAAAAAAAGGAACGATGAATATAGTTGTTCATATGCACGTGCACATGTCCGGATCTTACAGTTTAGATGCCACTAGATTTAGACCAAATGTAAAGGAGAATAGATAGGGATCTTACAGCTTCTAATTGATTTCTTCCCAGCCCATCAGAGGGATCTGTGGACTCAGCAGGATTTGATAATGATGATGATGATGGGGCAGAAGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATTCTGCAATTGTGATGGCATTGGTTCAGGAATCGGGAGTTCATCACTGGTGCCAAGATTTGGGAGAGTTCTTGTTAGTGTGGAGGCGCATCTGTGTAGATGAAAATAAAACACTGTGTATTTGTACTTATGTACCGCTCTAATCCTTTTTCCCGCCACTAATTTTATTTGCTTGGCGTCAAAAAAAAA] [+] EMBL BI810831 [ATTTGGTTCCTTCATCCTGAATTTTATCCGCTGGTAATAGTTTCCATCCAAAAATTCAAAGAAAAAAAGGAACGATGAATATAGTTGTTCATATGCACGTGCACATGTCCGGATCTTACAGTTTAGATGCCACTAGATTTAGACCAAATGTAAAGGAGAATAGATAGGGATCTTACAGCTTCTAATTGATTTCTTCCCAGCCCATCAGAGGGATCTGTGGACTCAGCAGGATTTGATAATGATGATGATGATGGGGCAGAAGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATTCTGCAATTGTGATGGCATTGGTTCAGGAATCGGGAGTTCATCACTGGTGCCAAGATTTGGGAGAGTTCTTGTTAGTGTGGAGGCGCATCTGTGTAGATGAAAATAAAACACTGTGTATTTGTACTTATGTACCGCTCTAATCCTTTTTCCCGCCACTAATTTTATTTGCTTGGCGTCAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1890#0 CCCCACCTTGACCTAGATGAACTCCGCCAGATTCCGCCGCTTTACGGGTGAGCTCGAGCA 60 consensus_1890#1 ------------------------------------------------------------ consensus_1890#0 CCGCTTGCCCGAGCAGTCGATTGTCTCGAGCTCGCCACCACTGATCAAGCGCCTTGCCGC 120 consensus_1890#1 -----------------------ATTTGGTTCCTTCATCCTGAATTTTATCCGCTGGTAA 37 * * * ** * ** * ** consensus_1890#0 TGAGTTGGAGCTGATGCATGGTTCAGCTCGTGCAAATTAATCAATGTCCAGCTGCATCAA 180 consensus_1890#1 TAGTTTCCATCCAAA----AATTCAAA--GAAAAAAAGGAACGATGAATATAGTTGTTCA 91 * ** * * * **** * *** * * *** * * * consensus_1890#0 AGTGCATGAGCTTGGATCGAGAAGGTCCATGATGTGATCGATGCTAACATCG--TCAAGT 238 consensus_1890#1 TATGCACGTGCACATGTCCGGAT--CTTACAGTTTAGATGCCACTAGATTTAGACCAAAT 149 **** * ** ** ** * * * * *** * *** * consensus_1890#0 ATTACGCCAACCTG-TGGATCCAATCCAGCCCGTGTGACTTGATTTTGTTCAGCC-ATCA 296 consensus_1890#1 GTAAAGGAGAATAGATAGGGATCTTACAGCT--TCTAATTGATTTCTTCCCAGCCCATCA 207 * * * * * * * * **** * * * * ** * ***** **** consensus_1890#0 GAGGGATCTGTGGACTCAGCAGGATTTGATGATGATGATGATGATGATGATGGGGGCAGA 356 consensus_1890#1 GAGGGATCTGTGGACTCAGCAGGATTTGATAATGATGATGATGATG-------GGGCAGA 260 ****************************** *************** ******* consensus_1890#0 AGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATTCTGCAATTGTGATGGCAT 416 consensus_1890#1 AGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATTCTGCAATTGTGATGGCAT 320 ************************************************************ consensus_1890#0 TGGTTCAGGAATCGGGAGTTCATCA-TGGTGCCAAGATTTGGGAGAGTTCTTGTTAGTGT 475 consensus_1890#1 TGGTTCAGGAATCGGGAGTTCATCACTGGTGCCAAGATTTGGGAGAGTTCTTGTTAGTGT 380 ************************* ********************************** consensus_1890#0 GGAGGCGCAATCCGGTGTAGATGAAAATAAAAACAACTGTGTATTTGTACTT-------- 527 consensus_1890#1 GGAGGCGCA--TCTGTGTAGATGAAAATAAAAC--ACTGTGTATTTGTACTTATGTACCG 436 ********* * ****************** ***************** consensus_1890#0 ---------------------------------------------------- consensus_1890#1 CTCTAATCCTTTTTCCCGCCACTAATTTTATTTGCTTGGCGTCAAAAAAAAA 488 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||