These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1891#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence [TTCCCCCAAATCACGCCCAGATGCGACCTCCTGCCTCCACGCCTTCCTCCCCGCAAATCCCTCCCCTCTCCACGCTGCTCCCCCTCACTCCCTCCCTGCCTTCCTCCCCGCACATCCCTCCTGCTCAACGCGGCGGCGGCGGCCGGTGGGGGAGGCGACGAGCGGACGCCTGTGTTCTTGCGTACATGCGGCCTCGGCGGCGGCGGTGACGAGCGGACAAGGCATCGGCGGCAACAAGCAGACGCGGCCTTGTCGGCGGCGGCGACCGGCGAACACAGCGACGGCGGCGACGAGCGGACACGGTCTCGTCGGGGTTTTTGTTAGTTCTTGTAGTATCTCTTTTTCTCTGTTCTCGGCTCTGTTCTTCATTGACAGATGCGAGGCTCCACCAGTCCACCTCCCCACACCTCCCTCCGTCGTGTTGGAAGCTTTGCTACGCGGCGGCGGCGATGGAGCCTTGCATGCGTGTGGTATACTGGTATGTGGCCGATGCTTGCTTTGCATGCTGATGGATGTGGCTTGCTCGGATGCAGCTGTTATGGTGGAAGGGATTGACGATGGGAAGGACAGCACAAGGAAATTCATGCTTGTCTTTTTTTACCGTTAATTAATGGTTGTACTTTGTACTTTGGTGAGGGCATACTAGTCTTTTGCAACTGCTGTTAAAGTTATCTCGGGCTTTTAGAAATCGTGATTTTGTGGGACGGAGGGAGTATATTGTAGGGGTAACACTATTTATTTTTCAGTGTCGACAAGGGACAGTGGTGGTCATGAGCTCATGCAAGCTCGATTTAGCTAGCTTACCTAGCCTTGTCTCAGGC] [+] EMBL CB627327 [TTCCCCCAAATCACGCCCAGATGCGACCTCCTGCCTCCACGCCTTCCTCCCCGCAAATCCCTCCCCTCTCCACGCTGCTCCCCCTCACTCCCTCCCTGCCTTCCTCCCCGCACATCCCTCCTGCTCAACGCGGCGGCGGCGGCCGGTGGGGGAGGCGACGAGCGGACGCCTGTGTTCTTGCGTACATGCGGCCTCGGCGGCGGCGGTGACGAGCGGACAAGGCATCGGCGGCAACAAGCAGACGCGGCCTTGTCGGCGGCGGCGACCGGCGAACACAGCGACGGCGGCGACGAGCGGACACGGTCTCGTCGGGGTTTTTGTTAGTTCTTGTAGTATCTCTTTTTCTCTGTTCTCGGCTCTGTTCTTCATTGACAGATGCGAGGCTCCACCAGTCCACCTCCCCACACCTCCCTCCGTCGTGTTGGAAGCTTTGCTACGCGGCGGCGGCGATGGAGCCTTGCATGCGTGTGGTATACTGGTATGTGGCCGATGCTTGCTTTGCATGCTGATGGATGTGGCTTGCTCGGATGCAGCTGTTATGGTGGAAGGGATTGACGATGGGAAGGACAGCACAAGGAAATTCATGCTTGTCTTTTTTTACCGTTAATTAATGGTTGTACTTTGTACTTTGGTGAGGGCATACTAGTCTTTTGCAACTGCTGTTAAAGTTATCTCGGGCTTTTAGAAATCGTGATTTTGTGGGACGGAGGGAGTATATTGTAGGGGTAACACTATTTATTTTTCAGTGTCGACAAGGGACAGTGGTGGTCATGAGCTCATGCAAGCTCGATTTAGCTAGCTTACCTAGCCTTGTCTCAGGC] consensusID : consensus_1891#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CCTCCTGCCTCCACGCCTTCCTCCCCGCAGATCCCTCCCCTCTCCACGCCGCTCCCCTCACGCCCTCCCTGCCTTCCTCCCCGCACATCCCTCCTGCTCAACGCGGCGGCGGTGGTCGGCGGGGGAGGCGACGAGCGGACGCCGGTGTTCTTGCGTACATGCGGCCTCGGCGGCGGCGGTGACGAGCGGACAAGGCATTGGCAGCAACAAGCGGACGCGGCCTCGTCGGCAGCGGCTACCGGCGAACACGGCGGCGGCGACGAGCGGACACGGCCTCGTCAGGGTTCTTGCTAGTTCTTGTAGTATCTGGTTCTTGCTAGTTCTTGTAGTATGTCTTTTTCTCTGTTCTTCATTGACAGATGCAAGGCTCCACCAGTCCACCTCCCCGCACCTCCCTCCGTTGTGTTGGAGGCTTTGCTACGCGGCGGCGGCGGTGGAGCCTTGCATGCGTGTGGTATACTAGTATGTGGCCGATAATTGCTTTGCATGCTGATGGATGTGGCTTTACTCGGATGCAGCTGTTATGGTGGAAGGGGATTGATGATGGGAAGGACAGCCACAGGGAAATTCATGCTTGTCTTTTTTT] [+] EMBL AK121026 [CCTCCTGCCTCCACGCCTTCCTCCCCGCAGATCCCTCCCCTCTCCACGCCGCTCCCCTCACGCCCTCCCTGCCTTCCTCCCCGCACATCCCTCCTGCTCAACGCGGCGGCGGTGGTCGGCGGGGGAGGCGACGAGCGGACGCCGGTGTTCTTGCGTACATGCGGCCTCGGCGGCGGCGGTGACGAGCGGACAAGGCATTGGCAGCAACAAGCGGACGCGGCCTCGTCGGCAGCGGCTACCGGCGAACACGGCGGCGGCGACGAGCGGACACGGCCTCGTCAGGGTTCTTGCTAGTTCTTGTAGTATCTGGTTCTTGCTAGTTCTTGTAGTATGTCTTTTTCTCTGTTCTTCATTGACAGATGCAAGGCTCCACCAGTCCACCTCCCCGCACCTCCCTCCGTTGTGTTGGAGGCTTTGCTACGCGGCGGCGGCGGTGGAGCCTTGCATGCGTGTGGTATACTAGTATGTGGCCGATAATTGCTTTGCATGCTGATGGATGTGGCTTTACTCGGATGCAGCTGTTATGGTGGAAGGGGATTGATGATGGGAAGGACAGCCACAGGGAAATTCATGCTTGTCTTTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1891#0 TTCCCCCAAATCACGCCCAGATGCGACCTCCTGCCTCCACGCCTTCCTCCCCGCAAATCC 60 consensus_1891#1 --------------------------CCTCCTGCCTCCACGCCTTCCTCCCCGCAGATCC 34 ***************************** **** consensus_1891#0 CTCCCCTCTCCACGCTGCTCCCCCTCACTCCCTCCCTGCCTTCCTCCCCGCACATCCCTC 120 consensus_1891#1 CTCCCCTCTCCACGCCGCTCCCC-TCACGCCCTCCCTGCCTTCCTCCCCGCACATCCCTC 93 *************** ******* **** ******************************* consensus_1891#0 CTGCTCAACGCGGCGGCGGCGGCCGGTGGGGGAGGCGACGAGCGGACGCCTGTGTTCTTG 180 consensus_1891#1 CTGCTCAACGCGGCGGCGGTGGTCGGCGGGGGAGGCGACGAGCGGACGCCGGTGTTCTTG 153 ******************* ** *** *********************** ********* consensus_1891#0 CGTACATGCGGCCTCGGCGGCGGCGGTGACGAGCGGACAAGGCATCGGCGGCAACAAGCA 240 consensus_1891#1 CGTACATGCGGCCTCGGCGGCGGCGGTGACGAGCGGACAAGGCATTGGCAGCAACAAGCG 213 ********************************************* *** ********* consensus_1891#0 GACGCGGCCTTGTCGGCGGCGGCGACCGGCGAACACAGCGACGGCGGCGACGAGCGGACA 300 consensus_1891#1 GACGCGGCCTCGTCGGCAGCGGCTACCGGCGAACACGG---CGGCGGCGACGAGCGGACA 270 ********** ****** ***** ************ * ******************* consensus_1891#0 CGGTCTCGTCGGGGTTTTTGTTAGTTCTTGTAGTATCTCTTTTTCTCT-GTTCTCGG--- 356 consensus_1891#1 CGGCCTCGTCAGGGTTCTTGCTAGTTCTTGTAGTATCTGGTTCTTGCTAGTTCTTGTAGT 330 *** ****** ***** *** ***************** ** * ** ***** * consensus_1891#0 ----------CTCTGTTCTTCATTGACAGATGCGAGGCTCCACCAGTCCACCTCCCCACA 406 consensus_1891#1 ATGTCTTTTTCTCTGTTCTTCATTGACAGATGCAAGGCTCCACCAGTCCACCTCCCCGCA 390 *********************** *********************** ** consensus_1891#0 CCTCCCTCCGTCGTGTTGGAAGCTTTGCTACGCGGCGGCGGCGATGGAGCCTTGCATGCG 466 consensus_1891#1 CCTCCCTCCGTTGTGTTGGAGGCTTTGCTACGCGGCGGCGGCGGTGGAGCCTTGCATGCG 450 *********** ******** ********************** **************** consensus_1891#0 TGTGGTATACTGGTATGTGGCCGATGCTTGCTTTGCATGCTGATGGATGTGGCTT-GCTC 525 consensus_1891#1 TGTGGTATACTAGTATGTGGCCGATAATTGCTTTGCATGCTGATGGATGTGGCTTTACTC 510 *********** ************* **************************** *** consensus_1891#0 GGATGCAGCTGTTATGGTGGAAGGG-ATTGACGATGGGAAGGACAGC-ACAAGGAAATTC 583 consensus_1891#1 GGATGCAGCTGTTATGGTGGAAGGGGATTGATGATGGGAAGGACAGCCACAGGGAAATTC 570 ************************* ***** *************** *** ******** consensus_1891#0 ATGCTTGTCTTTTTTTACCGTTAATTAATGGTTGTACTTTGTACTTTGGTGAGGGCATAC 643 consensus_1891#1 ATGCTTGTCTTTTTTT-------------------------------------------- 586 **************** consensus_1891#0 TAGTCTTTTGCAACTGCTGTTAAAGTTATCTCGGGCTTTTAGAAATCGTGATTTTGTGGG 703 consensus_1891#1 ------------------------------------------------------------ consensus_1891#0 ACGGAGGGAGTATATTGTAGGGGTAACACTATTTATTTTTCAGTGTCGACAAGGGACAGT 763 consensus_1891#1 ------------------------------------------------------------ consensus_1891#0 GGTGGTCATGAGCTCATGCAAGCTCGATTTAGCTAGCTTACCTAGCCTTGTCTCAGGC 821 consensus_1891#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||