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Oryza sativa
cluster # 1919 cluster # 1919       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1919#0 length = 2656 sequences # 2  

consensusID : consensus_1919#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2656
fasta sequence
                              [AGGGGCCAAAATCAAAATCCACCCGCCGACCTCTTCCCCTCCCCCCTCTCTTTCCCTCTCGCCGCCGCCGCCGCCGATTCCCAGTCGAACCGGCGCCGCCCGGTGCTCGGAGGCCGCCCTCCGCTCCGCCCGCCGGCGACCATGGAGGGGGACATGGACGCGACGATGACAACCCTGGGGCCGGAGGACGACACGGGCGCGCAGGGGCTGATCCTGCCGAGCAGGGATAGGGTCATGTACCGGCCGCCGCCGGGGAAGTCCGCCCTAGGTTTGGACCTCCTCGCGCACAGGAAACGGGAAGCAGAAGGCGGCAATGCCTTCAAGCCGCCGCCTCAGAAGGTAGTGGCAGCTGCTACTTCAATCGATGAAGATGAGAAGCCGGGACCTGCGGAGAGTGATGAGAAGAGCCTGAGCAGTGGCCATCGTGGCAGTGTTTCTCGCCGCTATCGAGGAGCCAACTCTGATGAGAGAACCTCTTTCAAAGAACCTACCATCACTGATGAGGATGGAAGGGGTCCTTCACCCAGTCACCGAGATGGATCTTATCGACAAGATACCCACAAATCTAGAAGTTCTCAAGGTTCCCATTCTCGTAGCACTCCTCGTAGATATGATGACTATGAGGATAGGGGATCCCGTGATAAACATGGAGAACGGGAAAGATCTGCATCCATTGGCTATAGTAGCAGTGGAAGGCGGGGACACCATGATGATAGAGAATCGCATAATAGGCGTGATGAACGTGAGAGATCTACATCCGTTGACTACATGAACAAGCGAAGTCGGCATGAGCATAGCTCAAGAAGCTCAAGAACACCTGCAAGATCTGATTGGGACAGTGGCCGATGGGAATGGGAAGATACACCTCGTCGGGAGTACCGTGATGATCGCTCAAATTCCCATAGACAACATCCTTCACCATCTCCTATGCTTGCAGCTGCATCCCCTGATGCACGCTTAGTGTCTCCTTGGCTAGGTGGGAATACGCCACGTTATGCAGCATCCCCATGGGATAACGTATCTCCATCACCTGCACCAATTCGCGCTTCTGGTTCATCAAAAGGGTCTTCTTATCCACGTTCTGGTGGAAGATCCCACCAGCTTACTTTTTCGTCTACATCTGCATCAAATGACAGGGAATCTGATAGAAGCCCCTCAGATGCCGATGGCAACTATGAGATATCTGAAGAAATGATGCAGGAGATGGATTATAATGCTGATCGTGCGTGGTATGATTGTGAAGAACACAACACCATGTTTGATGGTGATAATTCTATGTATCTTGAAGATGATAGTTCCTACAAAAAGAGGGAAGCACAATTACCAAAGCGGCTGACTCGTAAAGATGGCAGTCTGATGACCCTTGCTCAGAGCAAGAAGTTATCACAGATGACTGCTGATAATGCTCAATGGGAGGATAGACAGTTGTTGAGATCTGGAGCTGTCAGAGGAACAGAGGTGCAGACAGAATTTGATGATGAGGACGAAAGGAAAGTAATACTTCTTGTTCATGACACAAAACCCCCATTCCTGGATGGGCGAGTTGTATTCACAAAACAAGCAGAACCTGTAATGCCACTGAAGGACCCAACCTCCGATATGGCAATAGTTGCACGCAAAGGTTCTGCTTTGGTCAGGGAAATTCGTGAAAAACAGAGCATGAATAAGTCACGCCAACGCTTTTGGGAGCTCGCTGGATCTAAGCTTGGAAATATTTTGGGTGTTGAGAAAACGGCTGAACAGGTTGATGCAGATACTGCTACTGTTGGTGACCAAGGTGAGATTGATTTTAAAGAGGAAGCAAAATTTTCACAGCACATGAAGGTAAAAGCAGAAGCTGTTAGCGACTTTGCAAAATCAAAATCTCTTTCTCAACAGAGGCAATATCTTCCGATATTTACTGTACGGGATGACTTGCTACAGGTTGTGCGTGAAAATCAAGTAGTTGTGGTGGTTGGTGAAACTGGCTCTGGGAAGACTACCCAGCTGACTCAGTATCTGCATGAGGATGGATATACCACCACCGGCATTGTTGGCTGTACTCAACCTAGACGTGTGGCTGCCATGAGTGTTGCTAAAAGAGTTAGTG-AAGAAATGGAGACTGAGTTGGGACATAAAGTTGGATATGCAATTCGATTTGAGGACATGACTAGTCCCAACACTATAATAAAGTATATGACAGATGGAGTGCTGCTTCGGGAAACCTTGAAAGATGCTGACCTTGACAAATATCGTGTTATTGTCATGGATGAAGCACATGAGAGATCACTCAATACTGATGTTTTGTTTGGCATACTGAAGAAGGTTGTTGCACGTCGACGAGATTTTAAGCTAATTGTCACATCTGCAACCCTAAATGCGGACAAATTCTCAAAATTTTTTGGAGGAGTGCCTGTCTTCCATATTCCTGGCAGGACATTTCCTGTAAATATCATGTTCAGCAAAACACCATGTGAAGACTATGTGGAAGCGGCAGTGAAGCAGGCTATGACAATCCACATAACCAGTGGCCCTGGGGATATACTTATATTTATGACAGGGCAAGAGGAAATTGAGGCTACCTGCTATGCGCTTGCTGAGCGCCTGGAGCAGCTGATATCATCATCCACCAAGACTGTACCCAAGCTCTCCATCTTGCCCATCTACTCGCAGTTGC]

[+] EMBL AK073417             [AGGGGCCAAAATCAAAATCCACCCGCCGACCTCTTCCCCTCCCCCCTCTCTTTCCCTCTCGCCGCCGCCGCCGCCGATTCCCAGTCGAACCGGCGCCGCCCGGTGCTCGGAGGCCGCCCTCCGCTCCGCCCGCCGGCGACCATGGAGGGGGACATGGACGCGACGATGACAACCCTGGGGCCGGAGGACGACACGGGCGCGCAGGGGCTGATCCTGCCGAGCAGGGATAGGGTCATGTACCGGCCGCCGCCGGGGAAGTCCGCCCTAGGTTTGGACCTCCTCGCGCACAGGAAACGGGAAGCAGAAGGCGGCAATGCCTTCAAGCCGCCGCCTCAGAAGGTAGTGGCAGCTGCTACTTCAATCGATGAAGATGAGAAGCCGGGACCTGCGGAGAGTGATGAGAAGAGCCTGAGCAGTGGCCATCGTGGCAGTGTTTCTCGCCGCTATCGAGGAGCCAACTCTGATGAGAGAACCTCTTTCAAAGAACCTACCATCACTGATGAGGATGGAAGGGGTCCTTCACCCAGTCACCGAGATGGATCTTATCGACAAGATACCCACAAATCTAGAAGTTCTCAAGGTTCCCATTCTCGTAGCACTCCTCGTAGATATGATGACTATGAGGATAGGGGATCCCGTGATAAACATGGAGAACGGGAAAGATCTGCATCCATTGGCTATAGTAGCAGTGGAAGGCGGGGACACCATGATGATAGAGAATCGCATAATAGGCGTGATGAACGTGAGAGATCTACATCCGTTGACTACATGAACAAGCGAAGTCGGCATGAGCATAGCTCAAGAAGCTCAAGAACACCTGCAAGATCTGATTGGGACAGTGGCCGATGGGAATGGGAAGATACACCTCGTCGGGAGTACCGTGATGATCGCTCAAATTCCCATAGACAACATCCTTCACCATCTCCTATGCTTGCAGCTGCATCCCCTGATGCACGCTTAGTGTCTCCTTGGCTAGGTGGGAATACGCCACGTTATGCAGCATCCCCATGGGATAACGTATCTCCATCACCTGCACCAATTCGCGCTTCTGGTTCATCAAAAGGGTCTTCTTATCCACGTTCTGGTGGAAGATCCCACCAGCTTACTTTTTCGTCTACATCTGCATCAAATGACAGGGAATCTGATAGAAGCCCCTCAGATGCCGATGGCAACTATGAGATATCTGAAGAAATGATGCAGGAGATGGATTATAATGCTGATCGTGCGTGGTATGATTGTGAAGAACACAACACCATGTTTGATGGTGATAATTCTATGTATCTTGAAGATGATAGTTCCTACAAAAAGAGGGAAGCACAATTACCAAAGCGGCTGACTCGTAAAGATGGCAGTCTGATGACCCTTGCTCAGAGCAAGAAGTTATCACAGATGACTGCTGATAATGCTCAATGGGAGGATAGACAGTTGTTGAGATCTGGAGCTGTCAGAGGAACAGAGGTGCAGACAGAATTTGATGATGAGGACGAAAGGAAAGTAATACTTCTTGTTCATGACACAAAACCCCCATTCCTGGATGGGCGAGTTGTATTCACAAAACAAGCAGAACCTGTAATGCCACTGAAGGACCCAACCTCCGATATGGCAATAGTTGCACGCAAAGGTTCTGCTTTGGTCAGGGAAATTCGTGAAAAACAGAGCATGAATAAGTCACGCCAACGCTTTTGGGAGCTCGCTGGATCTAAGCTTGGAAATATTTTGGGTGTTGAGAAAACGGCTGAACAGGTTGATGCAGATACTGCTACTGTTGGTGACCAAGGTGAGATTGATTTTAAAGAGGAAGCAAAATTTTCACAGCACATGAAGGTAAAAGCAGAAGCTGTTAGCGACTTTGCAAAATCAAAATCTCTTTCTCAACAGAGGCAATATCTTCCGATATTTACTGTACGGGATGACTTGCTACAGGTTGTGCGTGAAAATCAAGTAGTTGTGGTGGTTGGTGAAACTGGCTCTGGGAAGACTACCCAGCTGACTCAGTATCTGCATGAGGATGGATATACCACCACCGGCATTGTTGGCTGTACTCAACCTAGACGTGTGGCTGCCATGAGTGTTGCTAAAAGAGTTAGTG AAGAAATGGAGACTGAGTTGGGACATAAAGTTGGATATGCAATTCGATTTGAGGACATGACTAGTCCCAACACTATAATAAAGTATATGACAGATGGAGTGCTGCTTCGGGAAACCTTGAAAGATGCTGACCTTGACAAATATCGTGTTATTGTCATGGATGAAGCACATGAGAGATCACTCAATACTGATGTTTTGTTTGGCATACTGAAGAAGGTTGTTGCACGTCGACGAGATTTTAAGCTAATTGTCACATCTGCAACCCTAAATGCGGACAAATTCTCAAAATTTTTTGGAGGAGTGCCTGTCTTCCATATTCCTGGCAGGACATTTCCTGTAAATATCATGTTCAGCAAAACACCATGTGAAGACTATGTGGAAGCGGCAGTGAAGCAGGCTATGACAATCCACATAACCAGTGGCCCTGGGGATATACTTATATTTATGACAGGGCAAGAGGAAATTGAGGCTACCTGCTATGCGCTTGCTGAGCGCCTGGAGCAGCTGATATCATCATCCACCAAGACTGTACCCAAGCTCTCCATCTTGCCCATCTACTCGCAGTTGC]
[+] EMBL CA756109             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGAAAACGGCTGAACAGGTTGATGCAGATACTGCTACTGTTGGTGACCAAGGTGAGATTGATTTTAAAGAGGAAGCAAAATTTTCACAGCACATGAAGGTAAAAGCAGAAGCTGTTAGCGACTTTGCAAAATCAAAATCTCTTTCTCAACAGAGGCAATATCTTCCGATATTTACTGTACGTGATGACTTGCTACAGGTTGTGCGTGAAAATCAAGTAGTTGTGGTGGTTGGTGAAACTGGCTCTGGGAAGACTACCCAGCTGACTCATTATCTGCATGAGGATGGATATACCACCACCGGCATTGTTGGATGTACTCAACCTAGACGTGTGGCTGCCATGAGTGTTGCTAAAAGAGTTAATGAAAGAAATGGAGAATGAGTTGCGACATAAAGTTGGATATGAAATTCGATTTGAGGACATGACTATTCCCCACACTATTATAAAGTATATGACAGATGGAGTGCTGCTCCGGGAAACCTTGAAAGATGCTGACCTTGACAAATATCGTGCTTTTGCCCTGAATGAAGNACCTGAAAGAACCCTCAATACTGATGTCTTGTTTGGCATAATGAA AAAGTTGGTGgcccct                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_1919#0 AGGGGCCAAAATCAAAATCCACCCGCCGACCTCTTCCCCTCCCCCCTCTCTTTCCCTCTC GCCGCCGCCGCCGCCGATTCCCAGTCGAACCGGCGCCGCCCGGTGCTCGGAGGCCGCCCT CCGCTCCGCCCGCCGGCGACCATGGAGGGGGACATGGACGCGACGATGACAACCCTGGGG CCGGAGGACGACACGGGCGCGCAGGGGCTGATCCTGCCGAGCAGGGATAGGGTCATGTAC CGGCCGCCGCCGGGGAAGTCCGCCCTAGGTTTGGACCTCCTCGCGCACAGGAAACGGGAA GCAGAAGGCGGCAATGCCTTCAAGCCGCCGCCTCAGAAGGTAGTGGCAGCTGCTACTTCA ATCGATGAAGATGAGAAGCCGGGACCTGCGGAGAGTGATGAGAAGAGCCTGAGCAGTGGC CATCGTGGCAGTGTTTCTCGCCGCTATCGAGGAGCCAACTCTGATGAGAGAACCTCTTTC AAAGAACCTACCATCACTGATGAGGATGGAAGGGGTCCTTCACCCAGTCACCGAGATGGA TCTTATCGACAAGATACCCACAAATCTAGAAGTTCTCAAGGTTCCCATTCTCGTAGCACT CCTCGTAGATATGATGACTATGAGGATAGGGGATCCCGTGATAAACATGGAGAACGGGAA AGATCTGCATCCATTGGCTATAGTAGCAGTGGAAGGCGGGGACACCATGATGATAGAGAA TCGCATAATAGGCGTGATGAACGTGAGAGATCTACATCCGTTGACTACATGAACAAGCGA AGTCGGCATGAGCATAGCTCAAGAAGCTCAAGAACACCTGCAAGATCTGATTGGGACAGT GGCCGATGGGAATGGGAAGATACACCTCGTCGGGAGTACCGTGATGATCGCTCAAATTCC CATAGACAACATCCTTCACCATCTCCTATGCTTGCAGCTGCATCCCCTGATGCACGCTTA GTGTCTCCTTGGCTAGGTGGGAATACGCCACGTTATGCAGCATCCCCATGGGATAACGTA TCTCCATCACCTGCACCAATTCGCGCTTCTGGTTCATCAAAAGGGTCTTCTTATCCACGT TCTGGTGGAAGATCCCACCAGCTTACTTTTTCGTCTACATCTGCATCAAATGACAGGGAA TCTGATAGAAGCCCCTCAGATGCCGATGGCAACTATGAGATATCTGAAGAAATGATGCAG GAGATGGATTATAATGCTGATCGTGCGTGGTATGATTGTGAAGAACACAACACCATGTTT GATGGTGATAATTCTATGTATCTTGAAGATGATAGTTCCTACAAAAAGAGGGAAGCACAA TTACCAAAGCGGCTGACTCGTAAAGATGGCAGTCTGATGACCCTTGCTCAGAGCAAGAAG TTATCACAGATGACTGCTGATAATGCTCAATGGGAGGATAGACAGTTGTTGAGATCTGGA GCTGTCAGAGGAACAGAGGTGCAGACAGAATTTGATGATGAGGACGAAAGGAAAGTAATA CTTCTTGTTCATGACACAAAACCCCCATTCCTGGATGGGCGAGTTGTATTCACAAAACAA GCAGAACCTGTAATGCCACTGAAGGACCCAACCTCCGATATGGCAATAGTTGCACGCAAA GGTTCTGCTTTGGTCAGGGAAATTCGTGAAAAACAGAGCATGAATAAGTCACGCCAACGC TTTTGGGAGCTCGCTGGATCTAAGCTTGGAAATATTTTGGGTGTTGAGAAAACGGCTGAA CAGGTTGATGCAGATACTGCTACTGTTGGTGACCAAGGTGAGATTGATTTTAAAGAGGAA GCAAAATTTTCACAGCACATGAAGGTAAAAGCAGAAGCTGTTAGCGACTTTGCAAAATCA AAATCTCTTTCTCAACAGAGGCAATATCTTCCGATATTTACTGTACGGGATGACTTGCTA CAGGTTGTGCGTGAAAATCAAGTAGTTGTGGTGGTTGGTGAAACTGGCTCTGGGAAGACT ACCCAGCTGACTCAGTATCTGCATGAGGATGGATATACCACCACCGGCATTGTTGGCTGT ACTCAACCTAGACGTGTGGCTGCCATGAGTGTTGCTAAAAGAGTTAGTGAAGAAATGGAG ACTGAGTTGGGACATAAAGTTGGATATGCAATTCGATTTGAGGACATGACTAGTCCCAAC ACTATAATAAAGTATATGACAGATGGAGTGCTGCTTCGGGAAACCTTGAAAGATGCTGAC CTTGACAAATATCGTGTTATTGTCATGGATGAAGCACATGAGAGATCACTCAATACTGAT GTTTTGTTTGGCATACTGAAGAAGGTTGTTGCACGTCGACGAGATTTTAAGCTAATTGTC ACATCTGCAACCCTAAATGCGGACAAATTCTCAAAATTTTTTGGAGGAGTGCCTGTCTTC CATATTCCTGGCAGGACATTTCCTGTAAATATCATGTTCAGCAAAACACCATGTGAAGAC TATGTGGAAGCGGCAGTGAAGCAGGCTATGACAATCCACATAACCAGTGGCCCTGGGGAT ATACTTATATTTATGACAGGGCAAGAGGAAATTGAGGCTACCTGCTATGCGCTTGCTGAG CGCCTGGAGCAGCTGATATCATCATCCACCAAGACTGTACCCAAGCTCTCCATCTTGCCC ATCTACTCGCAGTTGC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)