These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1714 fasta sequence [ACTTAGCCGCCCTAGAGACAAGCTAGAGAACAGCAAAGACAGCAATGTCCATGGCGTCTCTCCAAGCTCCTGAGTTCCTTGCGTCCTGCCTCCTCCTCGCCACCATTCTCTTCTTCAAGCAGCTTCTCGCGCCGTCGTCCAAGCAGCGCGCCGCCTCGCCGTCGCTACCACGCCCGAGAGGCCTCCCTCTCATCGGCAACCTCCACCAGGTCGGCGCGCTCCCGCACCGCTCCCTCGCCGCGCTCGCCGCCAGGCATGCGGCGCCGCTCATGCTGCTCCGCCTCGGCTCCGTGCCGACGCTCGTCGTCTCCACCGCCGACGCGGCGCGGGCGCTGTTCCGGGACAACGACCGCGCGCTGTCGGGGCGCCCGGCGCTGTACGCGGCCACCAGGCTCTCCTACGGCCAGAAGAGCATCTCCTTCGCGCCCGACGGCGCGTACTGGCGCGCCGCGCGCCGCGCGTGCATGTCGGAGCTCCTCGGCCCGCCGCGGGTGCGCGGGCTCCGCGACGCCCGGGAGCGCGAGGCCGCCGCGCTCGTCGCGGCCGTGGCGGCCGCCGGCGCCTCCCCCGTCAACCTGAGCGACATGGTCGCCGCCACCAGCAGCAGGATCGTGCGGCGCGTCGCCTTCGGCGACGGCGACGGCGACGAGAGCATGGACGTCAAGGCTGTCCTCAACGAGACCCAGGCTCTTCTTGGTGGTCTCTGGGTCGCCGACTACGTGCCGTGGCTCCGGTGGGTGGACACCCTCAGCGGCAAGAGGTGGCGGCTGGAGCGGCGGTTCCGCCAGCTCGACGCGCTCTACGAGCGCGTCATCGACGACCACCTCAACAAGCGCAAGCATGCATCCGACGAAGAAGACGACTTGGTCGACGTGCTCCTCCGCCTCCACGGCGATCCGGCTCACCGGAGCACGTTCGGCAGCCGCAGCCACATCAAAGGCATTCTCACGGACATGTTCATCGCCGGGAGCGACACGTCGGCGGTGACGGTGCAGTGGGCGATGACGGAGCTCGTCAGGAACCCGGACGTGCTCGCCAAGGCGCAGCACGAGGTGCGCCGCGTCGTCGCCGCCGGCGACAAGGTGCGGGAAGCCGACCTCCCGGAGCTCCACTACCTTCGCCTGGTCATCAAGGAGACACTGCGGCTCCACCCGGCGGCGCCGCTGCTGGTTCCACGGGAGACGACGGAGCCGTTCCGCACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCGTCAACGCGATGGCGATACACACGGACCCCGGCGTCTGGGGCCCGGACGCGGAGCGGTTCGTGCCCGAGCGCCACCGCGACGACGCCGACGGCTGCGCGCAGCAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATCGGGCGGAGGAGATGCCCCGGCGTGCGCTTCGCGGCGGCGGCGGTGGAGCTGCTGCTGGCCAACCTCCTCTTCTGCTTCGACTGGCGCGCGCCGCCGGGGCGCGAGGTGGACGTGGAGGAGGAGAACGGGCTGGCGGTGCACAAGAAGAACCCTCTCGTGCTCATCGCCACCAAGAGCAAGAGGAACACAGGTGGCCATTGACGACGCAGACATGTAACCTTGCTGGTAGGGTAATTTTATCAGAAGGTACATACAACATGTGTAAAAGGTACATACAACATGTGCAAAAGGTATTATTATCTTGAGATACTTTCTCAAGGGTTATAAAATTTTCT] [+] EMBL AK121175 [ACTTAGCCGCCCTAGAGACAAGCTAGAGAACAGCAAAGACAGCAATGTCCATGGCGTCTCTCCAAGCTCCTGAGTTCCTTGCGTCCTGCCTCCTCCTCGCCACCATTCTCTTCTTCAAGCAGCTTCTCGCGCCGTCGTCCAAGCAGCGCGCCGCCTCGCCGTCGCTACCACGCCCGAGAGGCCTCCCTCTCATCGGCAACCTCCACCAGGTCGGCGCGCTCCCGCACCGCTCCCTCGCCGCGCTCGCCGCCAGGCATGCGGCGCCGCTCATGCTGCTCCGCCTCGGCTCCGTGCCGACGCTCGTCGTCTCCACCGCCGACGCGGCGCGGGCGCTGTTCCGGGACAACGACCGCGCGCTGTCGGGGCGCCCGGCGCTGTACGCGGCCACCAGGCTCTCCTACGGCCAGAAGAGCATCTCCTTCGCGCCCGACGGCGCGTACTGGCGCGCCGCGCGCCGCGCGTGCATGTCGGAGCTCCTCGGCCCGCCGCGGGTGCGCGGGCTCCGCGACGCCCGGGAGCGCGAGGCCGCCGCGCTCGTCGCGGCCGTGGCGGCCGCCGGCGCCTCCCCCGTCAACCTGAGCGACATGGTCGCCGCCACCAGCAGCAGGATCGTGCGGCGCGTCGCCTTCGGCGACGGCGACGGCGACGAGAGCATGGACGTCAAGGCTGTCCTCAACGAGACCCAGGCTCTTCTTGGTGGTCTCTGGGTCGCCGACTACGTGCCGTGGCTCCGGTGGGTGGACACCCTCAGCGGCAAGAGGTGGCGGCTGGAGCGGCGGTTCCGCCAGCTCGACGCGCTCTACGAGCGCGTCATCGACGACCACCTCAACAAGCGCAAGCATGCATCCGACGAAGAAGACGACTTGGTCGACGTGCTCCTCCGCCTCCACGGCGATCCGGCTCACCGGAGCACGTTCGGCAGCCGCAGCCACATCAAAGGCATTCTCACGGACATGTTCATCGCCGGGAGCGACACGTCGGCGGTGACGGTGCAGTGGGCGATGACGGAGCTCGTCAGGAACCCGGACGTGCTCGCCAAGGCGCAGCACGAGGTGCGCCGCGTCGTCGCCGCCGGCGACAAGGTGCGGGAAGCCGACCTCCCGGAGCTCCACTACCTTCGCCTGGTCATCAAGGAGACACTGCGGCTCCACCCGGCGGCGCCGCTGCTGGTTCCACGGGAGACGACGGAGCCGTTCCGCACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCGTCAACGCGATGGCGATACACACGGACCCCGGCGTCTGGGGCCCGGACGCGGAGCGGTTCGTGCCCGAGCGCCACCGCGACGACGCCGACGGCTGCGCGCAGCAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATCGGGCGGAGGAGATGCCCCGGCGTGCGCTTCGCGGCGGCGGCGGTGGAGCTGCTGCTGGCCAACCTCCTCTTCTGCTTCGACTGGCGCGCGCCGCCGGGGCGCGAGGTGGACGTGGAGGAGGAGAACGGGCTGGCGGTGCACAAGAAGAACCCTCTCGTGCTCATCGCCACCAAGAGCAAGAGGAACACAGGTGGCCATTGACGACGCAGACATGTAACCTTGCTGGTAGGGTAATTTTATCAGAAGGTACATACAACATGTGTAAAAGGTACATACAACATGTGCAAAAGGTATTATTATCTTGAGATACTTTCTCAAGGGTTATAAAATTTTCT] consensusID : consensus_1931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence [TTCTTATCTCACTAAATTTCGGTCGGTCGAAAGCTCTGTGTGCGTGTAAAATTTGAGCATCAGAATTTAAACTTTAGTGGATAGACTGGAGTCATGTACTCACGACTCAACCACCACACCGCTGGTGCTTCCCCGTTTTCCTGGACATTTTGATCGATCGAAACCGAAATGTGTGGTCTTGCAGGACATGTTCATCGCCGGGAGCGACACGTCGGCGGTGACGGTGCAGTGGGCGATGACGGAGCTCGTCAGGAACCTGGACGTGCTCGCCAAGGCGCAGCACGAGGTGCGCCGCGTCGTCGCCGCCGGCGACAAGGTGCGGGAAGCCGACCTCCCGGAGCTCCACTACCTTCGCCTGGTCATCAAGGAGACACTGCGGCTCCACCCGGCGGCGCCGCTGCTGGTTCCACGGGAGACGACGGAGCCGTTCCGCACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCGTCAACGCGATGGCGATACACACGGACCCCGGCGTCTGGGGCCCGGACGCGGAGCGGTTCGTGCCCGAGCGCCACCGCGACGACGCCGACGGCTGCGCGCAGCAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATCGGGCGGAGGAGATGCCCCGGCGTGCACTTCGCGGCGGCGGCGGTGGAGCTGCTGCTGGCCAACCTCCTCTTCTGCTTCGACTGGCGCGCGCCGCCGGGGCGCGAG] [-] EMBL AK063679 [TTCTTATCTCACTAAATTTCGGTCGGTCGAAAGCTCTGTGTGCGTGTAAAATTTGAGCATCAGAATTTAAACTTTAGTGGATAGACTGGAGTCATGTACTCACGACTCAACCACCACACCGCTGGTGCTTCCCCGTTTTCCTGGACATTTTGATCGATCGAAACCGAAATGTGTGGTCTTGCAGGACATGTTCATCGCCGGGAGCGACACGTCGGCGGTGACGGTGCAGTGGGCGATGACGGAGCTCGTCAGGAACCTGGACGTGCTCGCCAAGGCGCAGCACGAGGTGCGCCGCGTCGTCGCCGCCGGCGACAAGGTGCGGGAAGCCGACCTCCCGGAGCTCCACTACCTTCGCCTGGTCATCAAGGAGACACTGCGGCTCCACCCGGCGGCGCCGCTGCTGGTTCCACGGGAGACGACGGAGCCGTTCCGCACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCGTCAACGCGATGGCGATACACACGGACCCCGGCGTCTGGGGCCCGGACGCGGAGCGGTTCGTGCCCGAGCGCCACCGCGACGACGCCGACGGCTGCGCGCAGCAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATCGGGCGGAGGAGATGCCCCGGCGTGCACTTCGCGGCGGCGGCGGTGGAGCTGCTGCTGGCCAACCTCCTCTTCTGCTTCGACTGGCGCGCGCCGCCGGGGCGCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1931#0 ACTTAGCCGCCCTAGAGACAAGCTAGAGAACAGCAAAGACAGCAATGTCCATGGCGTCTC 60 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 TCCAAGCTCCTGAGTTCCTTGCGTCCTGCCTCCTCCTCGCCACCATTCTCTTCTTCAAGC 120 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 AGCTTCTCGCGCCGTCGTCCAAGCAGCGCGCCGCCTCGCCGTCGCTACCACGCCCGAGAG 180 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 GCCTCCCTCTCATCGGCAACCTCCACCAGGTCGGCGCGCTCCCGCACCGCTCCCTCGCCG 240 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 CGCTCGCCGCCAGGCATGCGGCGCCGCTCATGCTGCTCCGCCTCGGCTCCGTGCCGACGC 300 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 TCGTCGTCTCCACCGCCGACGCGGCGCGGGCGCTGTTCCGGGACAACGACCGCGCGCTGT 360 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 CGGGGCGCCCGGCGCTGTACGCGGCCACCAGGCTCTCCTACGGCCAGAAGAGCATCTCCT 420 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 TCGCGCCCGACGGCGCGTACTGGCGCGCCGCGCGCCGCGCGTGCATGTCGGAGCTCCTCG 480 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 GCCCGCCGCGGGTGCGCGGGCTCCGCGACGCCCGGGAGCGCGAGGCCGCCGCGCTCGTCG 540 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 CGGCCGTGGCGGCCGCCGGCGCCTCCCCCGTCAACCTGAGCGACATGGTCGCCGCCACCA 600 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 GCAGCAGGATCGTGCGGCGCGTCGCCTTCGGCGACGGCGACGGCGACGAGAGCATGGACG 660 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 TCAAGGCTGTCCTCAACGAGACCCAGGCTCTTCTTGGTGGTCTCTGGGTCGCCGACTACG 720 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 TGCCGTGGCTCCGGTGGGTGGACACCCTCAGCGGCAAGAGGTGGCGGCTGGAGCGGCGGT 780 consensus_1931#1 -----------------------------------------TTCTTATCTCACTAA--AT 17 * * * consensus_1931#0 TCCGCCAGCTCGACGCGCTCTACGAGCGCGTCATCGACGACCACCTCAACAAGCGCAAGC 840 consensus_1931#1 TTCGGTCGGTCGA-AAGCTCTGTGTGCGTGTAAAATTTGAGCATCAGAATTTAAACTTTA 76 * ** * **** ***** * *** ** * ** ** * ** * consensus_1931#0 ATGCATCCGACGAAGAAGACGACTTGGTCGACGTGCTCCTC-CGCCTCCACGGCGATCCG 899 consensus_1931#1 GTGGATAGACTGGAGTCATGTACTCA--CGACTCAACCACCACACCGCTGGTGCTTCCCC 134 ** ** * ** *** **** * * * ** * ** ** consensus_1931#0 GCTCACCGGAGCACGTTCGGCAGCCGCAGCCACATCAAAGGCATTCTCACGGACATGTTC 959 consensus_1931#1 GTTTTCCTGGACATTTTGATCGATCGAAACCGAAATGTGTGGTCTTGCA-GGACATGTTC 193 * * ** * ** ** * ** * ** * * * ** ********** consensus_1931#0 ATCGCCGGGAGCGACACGTCGGCGGTGACGGTGCAGTGGGCGATGACGGAGCTCGTCAGG 1019 consensus_1931#1 ATCGCCGGGAGCGACACGTCGGCGGTGACGGTGCAGTGGGCGATGACGGAGCTCGTCAGG 253 ************************************************************ consensus_1931#0 AACCCGGACGTGCTCGCCAAGGCGCAGCACGAGGTGCGCCGCGTCGTCGCCGCCGGCGAC 1079 consensus_1931#1 AACCTGGACGTGCTCGCCAAGGCGCAGCACGAGGTGCGCCGCGTCGTCGCCGCCGGCGAC 313 **** ******************************************************* consensus_1931#0 AAGGTGCGGGAAGCCGACCTCCCGGAGCTCCACTACCTTCGCCTGGTCATCAAGGAGACA 1139 consensus_1931#1 AAGGTGCGGGAAGCCGACCTCCCGGAGCTCCACTACCTTCGCCTGGTCATCAAGGAGACA 373 ************************************************************ consensus_1931#0 CTGCGGCTCCACCCGGCGGCGCCGCTGCTGGTTCCACGGGAGACGACGGAGCCGTTCCGC 1199 consensus_1931#1 CTGCGGCTCCACCCGGCGGCGCCGCTGCTGGTTCCACGGGAGACGACGGAGCCGTTCCGC 433 ************************************************************ consensus_1931#0 ACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCGTCAACGCGATGGCGATA 1259 consensus_1931#1 ACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCGTCAACGCGATGGCGATA 493 ************************************************************ consensus_1931#0 CACACGGACCCCGGCGTCTGGGGCCCGGACGCGGAGCGGTTCGTGCCCGAGCGCCACCGC 1319 consensus_1931#1 CACACGGACCCCGGCGTCTGGGGCCCGGACGCGGAGCGGTTCGTGCCCGAGCGCCACCGC 553 ************************************************************ consensus_1931#0 GACGACGCCGACGGCTGCGCGCAGCAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATC 1379 consensus_1931#1 GACGACGCCGACGGCTGCGCGCAGCAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATC 613 ************************************************************ consensus_1931#0 GGGCGGAGGAGATGCCCCGGCGTGCGCTTCGCGGCGGCGGCGGTGGAGCTGCTGCTGGCC 1439 consensus_1931#1 GGGCGGAGGAGATGCCCCGGCGTGCACTTCGCGGCGGCGGCGGTGGAGCTGCTGCTGGCC 673 ************************* ********************************** consensus_1931#0 AACCTCCTCTTCTGCTTCGACTGGCGCGCGCCGCCGGGGCGCGAGGTGGACGTGGAGGAG 1499 consensus_1931#1 AACCTCCTCTTCTGCTTCGACTGGCGCGCGCCGCCGGGGCGCGAG--------------- 718 ********************************************* consensus_1931#0 GAGAACGGGCTGGCGGTGCACAAGAAGAACCCTCTCGTGCTCATCGCCACCAAGAGCAAG 1559 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 AGGAACACAGGTGGCCATTGACGACGCAGACATGTAACCTTGCTGGTAGGGTAATTTTAT 1619 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 CAGAAGGTACATACAACATGTGTAAAAGGTACATACAACATGTGCAAAAGGTATTATTAT 1679 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 CTTGAGATACTTTCTCAAGGGTTATAAAATTTTCT 1714 consensus_1931#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||