These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTAAAGAAACGGGTTTAAAAAAAAAAATTTTTTTGGTGCCCAAGGGTTTTCCCCCGGGCCCGGGATTTTTTTCCCCCAATTTTTAAGGGGAAAAATTTTGGGTTTTGCCAAAAAAACCCCCCCCTTTTTTTTTTAAAAAAAGGGGGCCCAAAAAAAAAGGGCAAAAAGGGGTTTCCCCCGGGCCCCAAAAAAAAATTTGGGGGGATTGGTTTTTTTGAAAAAAGGGAAATTGCCCCCCCCCTGGGAAAAAAAGGCCCCACCTTCCTTTTTTTTCCCCCTTCACCCCAGGGAAGGGCCCAAGGGGAAATTTTTTAAAACCCGGGGGAATTTCCCTTTTAGGGGGGGGTAATTTTGAGCTGGGGGAAAAAAGGGGAAAAACTGTTCCCTGGGAAAAAATGTTTCCCCCTAAAAATTCCCCAAAAAAAAAAACCCGGAAAAAAAAAGGGAAAACCCGGGGGGGCCCAAAGGGGGGCCCCC] [+] EMBL CF327281 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTAAAGAAACGGGTTTAAAAAAAAAAATTTTTTTGGTGCCCAAGGGTTTTCCCCCGGGCCCGGGATTTTTTTCCCCCAATTTTTAAGGGGAAAAATTTTGGGTTTTGCCAAAAAAACCCCCCCCTTTTTTTTTTAAAAAAAGGGGGCCCAAAAAAAAAGGGCAAAAAGGGGTTTCCCCCGGGCCCCAAAAAAAAATTTGGGGGGATTGGTTTTTTTGAAAAAAGGGAAATTGCCCCCCCCCTGGGAAAAAAAGGCCCCACCTTCCTTTTTTTTCCCCCTTCACCCCAGGGAAGGGCCCAAGGGGAAATTTTTTAAAACCCGGGGGAATTTCCCTTTTAGGGGGGGGTAATTTTGAGCTGGGGGAAAAAAGGGGAAAAACTGTTCCCTGGGAAAAAATGTTTCCCCCTAAAAATTCCCCAAAAAAAAAAACCCGGAAAAAAAAAGGGAAAACCCGGGGGGGCCCAAAGGGGGGCCCCC] consensusID : consensus_1938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAGGGGCCCCTTTTTTTGGGGCCGGGGGCCCCAAAATTTTCCCCCCCTCACCCCATGGAAGGGCCCAAGGGGAAATTTTTTAAAACCCGGGGAAATTCCCCCTTTAGGGGGGGGAAATTTTGGCCGGGGGGAAAAAAGGGGAAAAACGGTTCCCGGGGAAAAAATGTTTCCCCCCCAAAATCCCCAAAAAAAAAAAACCCGGAAAAAAAAAGGGAAAACCCGGGGGGCCCCAAAAAGGGACCCCCCCCCCATTATTGGGGGGGCCCCCCCGGCCCCTTTTCAAAAGGGAAAACCTGGGGGCCCCCCTTTTTAAAAAAATCCCCCCCCCCCCGGGGAAAGGGGGTTTTCTTTTGGGCCCCTTTTCCCTTTCCCCAAAAAAAAAACCCGGGGCCTGGGGGTT] [+] EMBL CF299352 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAGGGGCCCCTTTTTTTGGGGCCGGGGGCCCCAAAATTTTCCCCCCCTCACCCCATGGAAGGGCCCAAGGGGAAATTTTTTAAAACCCGGGGAAATTCCCCCTTTAGGGGGGGGAAATTTTGGCCGGGGGGAAAAAAGGGGAAAAACGGTTCCCGGGGAAAAAATGTTTCCCCCCCAAAATCCCCAAAAAAAAAAAACCCGGAAAAAAAAAGGGAAAACCCGGGGGGCCCCAAAAAGGGACCCCCCCCCCATTATTGGGGGGGCCCCCCCGGCCCCTTTTCAAAAGGGAAAACCTGGGGGCCCCCCTTTTTAAAAAAATCCCCCCCCCCCCGGGGAAAGGGGGTTTTCTTTTGGGCCCCTTTTCCCTTTCCCCAAAAAAAAAACCCGGGGCCTGGGGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1938#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_1938#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 ************************************************************ consensus_1938#0 TTTTTTTTTNTAAAGAAACGGGTTTAAAAAAAAAAA----TTTTTTTGGTGCCCAAGGGT 116 consensus_1938#1 TTTTTTTTTTTT----TTTTTTTTTAAAAAAAAGGGGCCCCTTTTTTTGGGGCCGGGGGC 116 ********* * *********** ****** * * ** *** consensus_1938#0 TTTCCCCCGGGCCCGGGATTTTTTTCCCCCAATTTTTAAGGGGAAAAATTTTGGGTTTTG 176 consensus_1938#1 CCCAAAATTTTCCCCCCCTCACCCCATGGAAGGGCCCAAGGGGAAATTTTTTAAA----A 172 *** * * ********* **** consensus_1938#0 CCAAAAAAACCCCCCCCTTTTTTTTTTAAAAAAAGGGGGCCCAAAAAAAAAGGGCAAAAA 236 consensus_1938#1 CCCGGGGAAATTCCCCCTTTAGGGGGGGGAAATTTTGGCCGGGGGGAAAAAAGGGGAAAA 232 ** ** ******** *** ** * ***** ** **** consensus_1938#0 GGGGTTTCCCCCGGGCCCCAAAAAAAAATTTGGGGGGATTGGTTTTTTTGAAAAAAGGGA 296 consensus_1938#1 ACGGTT---CCCGGG------GAAAAAATGTTTCCCCCCCAAAATCCCCAAAAAAAAAAA 283 **** ****** ******* * * ****** * consensus_1938#0 AATTGCCCCCCCCCTGGGAAAAAAAGGCCCCACCTTCCTTTTTTTTCCCCCTTCACCCCA 356 consensus_1938#1 ACCCGGAAAAAAAAAGGGAAAACCCGGGGGGCCCCAAAAAGGGACCCCCCCCCCATTATT 343 * * ******* ** ** ***** ** consensus_1938#0 GGGAAGGGCCCAAGGGGAAATTTTTTAAA-----ACCCGGGGGAATTTCCCTTTTAGGGG 411 consensus_1938#1 GGGGGGGCCCCCCCGGCCCCTTTTCAAAAGGGAAAACCTGGGGGCCCCCCTTTTTAAAAA 403 *** ** *** ** **** *** * ** **** ** ***** consensus_1938#0 GGGGTAATTTTGAGCTGGGGGAAAAAAGGGGAAAAACTGTTCCCTGGGAAAAAATGTTTC 471 consensus_1938#1 -----AATCCCCCCCCCCCCGGGGAAAGGGGG-----TTTTCTTTTGGG----------C 443 *** * * ******* * *** * ** * consensus_1938#0 CCCCTAAAAATTCCCCAAAAAAAAAAACCCGGAAAAAAAAAGGGAAAACCCGGGGGGGCC 531 consensus_1938#1 CCCTTTTCCCTTTCCCCAAAAAAAAAACCCGGGGCCTGGGGGTT---------------- 487 *** * ** *** *************** * consensus_1938#0 CAAAGGGGGGCCCCC 546 consensus_1938#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||