These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1732 fasta sequence [GCGCCGCTGCTTGCCTCCGCTGAGCTCATCTCGCTGCCCTCCTCACCCATCGCCCCTGGCCACGCCTTCACTGCCGACTTCGCCGCCTTGGCTACGCTCGCGGTCGCGCTCGCCTGGAGGGCCGCCGCGCCGTGGCGGGATGGGGTCGTCGCGCAGACTCCACCGCACCAGGTCGCCGCGCTACTTATCTCCACCGCACCGTCGGCCATGGAGATAAAGGCTGCTGCCACCGGCGATAAGGCGGTAGAGGAGCACCTTGTGATTTTTTTTTTGTCATCTCCATCTAGGTAGAGGAGCGGGTGAGGTGAAGCGATGATTTCTTTGATTGGGATGTTTTGATTGAGGATTACTTAAGTACACATGTGCCTTTCTTGGGTAAGGGAAGGATGTGGGTGGTTGATTTGGAGGGAGTTTCTTAGATCGGTTTGGGATTGGGGGAGAGTCGCTGCTGGATTTGGGTTTCTTGCTGGTTTCTCATGATTCTTCTTCCCCCACAGCCACGAGATAGCTAGAAGAAAATGGTAGGCCAATGCAGTCTTTCCTTCTCGAATGCCTCGGCAGCGAGAGGAGCTGTCCTTGAAAATTTGTGGTTGTTTTACGGGGATCTTTGCCTCTTTGTGCTTTCCTGATTCGCTAGCTTTGATGCTGGTTCTTGCCTTGTGATGTGGTGTATCCGATTTGGTTCATTTGTTGCATTGAAAACCTCCTGGTCTGGGCTGGCAGACGCTCAGGATTTCTCGGAGGCGGGAGGCCCAGCACCGCGCCATGCGTTTTTCCACCGCGGGGGCAACCGAGACGGATTACACGAATACACAACACGGAAGTCACACGCGTAGATTTTTATCGGATAACAGGAGACGGACGATTTTTTTAGCGGAAGCCTTGCGTATTTTTTAATTAGATATATATAGATTTATATGCTTCAAGTCCTTGGCGGTTGGATCTAGATCGGAGGGACAAAAAATTTGACAGATTGAGAGGGTTGTTTTCTGTCGAATGAGCAGTAGACAGTCCATTATCACAAAACTATAGATTTAGAACTAATTTAGTCATAAAATAATAATGCTTATAGATCCAACATAATAATAATGGTTATAGGGATTTAAAGTTGTAGTTTTGTGATAACTCCAATTTTAAATATGTAGTTTTGTGATATTTAACTTTAAATCTGTAGTTTTGTGATAAATATGATGCTAAATCTGTAATTTTGTGATATAACGCCTTAAATTTGTAGTTTTGCAATAGTTTAATCAAAATACCAAAAGTTTTGTGAAATTTACTCTTATGCGTTTCTTGCCAATTAATTACTCCACATGTTTGCCACCATTAAAACACATAATAGCATATTTGCATTAAGAAAAAAGAAGCTAGAATACATGTTATTTAGCTTCTCCTAAACCTCCAACTCTTTTCTTTCAAACAGTCTAGTTCCCACCTAAATCTTAGGAATATGTGGTTGTAGAATAAAATGAATTAGAAAAAAAATACTGAAGCTAACTACGTCACATCATCTATAATTTAGTACATATTAAAACTCGACATGTAACCAATGCTAAAATTTATCATTTCCATAATATTTCAATCTATATCTATCTATCATTTCTTTCTTTAACATTTAATACATATCCATCCATCATTTCTACAACATTTAGCATATATTTATCATGTATTTGGCAGCAAAGCAGGAGATGTAAGTGATTTGTGATTCAAAGACATAACTTTTATATACCAG] [+] EMBL AK066750 [GCGCCGCTGCTTGCCTCCGCTGAGCTCATCTCGCTGCCCTCCTCACCCATCGCCCCTGGCCACGCCTTCACTGCCGACTTCGCCGCCTTGGCTACGCTCGCGGTCGCGCTCGCCTGGAGGGCCGCCGCGCCGTGGCGGGATGGGGTCGTCGCGCAGACTCCACCGCACCAGGTCGCCGCGCTACTTATCTCCACCGCACCGTCGGCCATGGAGATAAAGGCTGCTGCCACCGGCGATAAGGCGGTAGAGGAGCACCTTGTGATTTTTTTTTTGTCATCTCCATCTAGGTAGAGGAGCGGGTGAGGTGAAGCGATGATTTCTTTGATTGGGATGTTTTGATTGAGGATTACTTAAGTACACATGTGCCTTTCTTGGGTAAGGGAAGGATGTGGGTGGTTGATTTGGAGGGAGTTTCTTAGATCGGTTTGGGATTGGGGGAGAGTCGCTGCTGGATTTGGGTTTCTTGCTGGTTTCTCATGATTCTTCTTCCCCCACAGCCACGAGATAGCTAGAAGAAAATGGTAGGCCAATGCAGTCTTTCCTTCTCGAATGCCTCGGCAGCGAGAGGAGCTGTCCTTGAAAATTTGTGGTTGTTTTACGGGGATCTTTGCCTCTTTGTGCTTTCCTGATTCGCTAGCTTTGATGCTGGTTCTTGCCTTGTGATGTGGTGTATCCGATTTGGTTCATTTGTTGCATTGAAAACCTCCTGGTCTGGGCTGGCAGACGCTCAGGATTTCTCGGAGGCGGGAGGCCCAGCACCGCGCCATGCGTTTTTCCACCGCGGGGGCAACCGAGACGGATTACACGAATACACAACACGGAAGTCACACGCGTAGATTTTTATCGGATAACAGGAGACGGACGATTTTTTTAGCGGAAGCCTTGCGTATTTTTTAATTAGATATATATAGATTTATATGCTTCAAGTCCTTGGCGGTTGGATCTAGATCGGAGGGACAAAAAATTTGACAGATTGAGAGGGTTGTTTTCTGTCGAATGAGCAGTAGACAGTCCATTATCACAAAACTATAGATTTAGAACTAATTTAGTCATAAAATAATAATGCTTATAGATCCAACATAATAATAATGGTTATAGGGATTTAAAGTTGTAGTTTTGTGATAACTCCAATTTTAAATATGTAGTTTTGTGATATTTAACTTTAAATCTGTAGTTTTGTGATAAATATGATGCTAAATCTGTAATTTTGTGATATAACGCCTTAAATTTGTAGTTTTGCAATAGTTTAATCAAAATACCAAAAGTTTTGTGAAATTTACTCTTATGCGTTTCTTGCCAATTAATTACTCCACATGTTTGCCACCATTAAAACACATAATAGCATATTTGCATTAAGAAAAAAGAAGCTAGAATACATGTTATTTAGCTTCTCCTAAACCTCCAACTCTTTTCTTTCAAACAGTCTAGTTCCCACCTAAATCTTAGGAATATGTGGTTGTAGAATAAAATGAATTAGAAAAAAAATACTGAAGCTAACTACGTCACATCATCTATAATTTAGTACATATTAAAACTCGACATGTAACCAATGCTAAAATTTATCATTTCCATAATATTTCAATCTATATCTATCTATCATTTCTTTCTTTAACATTTAATACATATCCATCCATCATTTCTACAACATTTAGCATATATTTATCATGTATTTGGCAGCAAAGCAGGAGATGTAAGTGATTTGTGATTCAAAGACATAACTTTTATATACCAG] consensusID : consensus_1979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [CGACCATGTAACCCCAATGGCTAAAATTTTGATGCATTGCCATAATGATTTGCCATGCTAATAATGCTGATGCTGATGCACTTTGCTTTGCTGTTAACCACTGTTGAATACATGATGCCATGCCATCATTTCTACACATTTAGCATATATTTATCATGTATTTGCACCAAGCACGGAGATGTAAGTGATTTGTGATTCAAGACATAACTTTTATATACCCGCTTATTCACTAAAAAAAAAA] [+] EMBL BI812658 [CGACCATGTAACCCCAATGGCTAAAATTTTGATGCATTGCCATAATGATTTGCCATGCTAATAATGCTGATGCTGATGCACTTTGCTTTGCTGTTAACCACTGTTGAATACATGATGCCATGCCATCATTTCTACACATTTAGCATATATTTATCATGTATTTGCACCAAGCACGGAGATGTAAGTGATTTGTGATTCAAGACATAACTTTTATATACCCGCTTATTCACTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1979#0 GCGCCGCTGCTTGCCTCCGCTGAGCTCATCTCGCTGCCCTCCTCACCCATCGCCCCTGGC 60 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 CACGCCTTCACTGCCGACTTCGCCGCCTTGGCTACGCTCGCGGTCGCGCTCGCCTGGAGG 120 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 GCCGCCGCGCCGTGGCGGGATGGGGTCGTCGCGCAGACTCCACCGCACCAGGTCGCCGCG 180 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 CTACTTATCTCCACCGCACCGTCGGCCATGGAGATAAAGGCTGCTGCCACCGGCGATAAG 240 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 GCGGTAGAGGAGCACCTTGTGATTTTTTTTTTGTCATCTCCATCTAGGTAGAGGAGCGGG 300 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 TGAGGTGAAGCGATGATTTCTTTGATTGGGATGTTTTGATTGAGGATTACTTAAGTACAC 360 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 ATGTGCCTTTCTTGGGTAAGGGAAGGATGTGGGTGGTTGATTTGGAGGGAGTTTCTTAGA 420 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 TCGGTTTGGGATTGGGGGAGAGTCGCTGCTGGATTTGGGTTTCTTGCTGGTTTCTCATGA 480 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 TTCTTCTTCCCCCACAGCCACGAGATAGCTAGAAGAAAATGGTAGGCCAATGCAGTCTTT 540 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 CCTTCTCGAATGCCTCGGCAGCGAGAGGAGCTGTCCTTGAAAATTTGTGGTTGTTTTACG 600 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 GGGATCTTTGCCTCTTTGTGCTTTCCTGATTCGCTAGCTTTGATGCTGGTTCTTGCCTTG 660 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 TGATGTGGTGTATCCGATTTGGTTCATTTGTTGCATTGAAAACCTCCTGGTCTGGGCTGG 720 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 CAGACGCTCAGGATTTCTCGGAGGCGGGAGGCCCAGCACCGCGCCATGCGTTTTTCCACC 780 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 GCGGGGGCAACCGAGACGGATTACACGAATACACAACACGGAAGTCACACGCGTAGATTT 840 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 TTATCGGATAACAGGAGACGGACGATTTTTTTAGCGGAAGCCTTGCGTATTTTTTAATTA 900 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 GATATATATAGATTTATATGCTTCAAGTCCTTGGCGGTTGGATCTAGATCGGAGGGACAA 960 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 AAAATTTGACAGATTGAGAGGGTTGTTTTCTGTCGAATGAGCAGTAGACAGTCCATTATC 1020 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 ACAAAACTATAGATTTAGAACTAATTTAGTCATAAAATAATAATGCTTATAGATCCAACA 1080 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 TAATAATAATGGTTATAGGGATTTAAAGTTGTAGTTTTGTGATAACTCCAATTTTAAATA 1140 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 TGTAGTTTTGTGATATTTAACTTTAAATCTGTAGTTTTGTGATAAATATGATGCTAAATC 1200 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 TGTAATTTTGTGATATAACGCCTTAAATTTGTAGTTTTGCAATAGTTTAATCAAAATACC 1260 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 AAAAGTTTTGTGAAATTTACTCTTATGCGTTTCTTGCCAATTAATTACTCCACATGTTTG 1320 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 CCACCATTAAAACACATAATAGCATATTTGCATTAAGAAAAAAGAAGCTAGAATACATGT 1380 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 TATTTAGCTTCTCCTAAACCTCCAACTCTTTTCTTTCAAACAGTCTAGTTCCCACCTAAA 1440 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 TCTTAGGAATATGTGGTTGTAGAATAAAATGAATTAGAAAAAAAATACTGAAGCTAACTA 1500 consensus_1979#1 ------------------------------------------------------------ consensus_1979#0 CGTCACATCATCTATAATTTAGTACATATTAAAACTCGACATGTAACCAATGCTAAAATT 1560 consensus_1979#1 ----CGACCATGTA-ACCCCAATGGCTA--AAATTTTGATGCATTGCCA---TAATGATT 50 * *** ** * * * ** *** * ** * *** * *** consensus_1979#0 TATCATTTCCATAATATTTCAATCTATATCTATCTATCATTTCT-TTCTTTAACATTTAA 1619 consensus_1979#1 TGCCATGCTAATAATGCT--GATGCTGATGCACTTTGCTTTGCTGTTAACCACTGTTGAA 108 * *** ***** * ** ** * * * ** ** ** * ** ** consensus_1979#0 TACATAT--CCAT-CCATCATTTCTACAACATTTAGCATATATTTATCATGTATTTGGCA 1676 consensus_1979#1 TACATGATGCCATGCCATCATTTCTACA-CATTTAGCATATATTTATCATGTATTTG-CA 166 ***** **** ************** **************************** ** consensus_1979#0 GCAAAGCAGGAGATGTAAGTGATTTGTGATTCAAAGACATAACTTTTATATACCAG---- 1732 consensus_1979#1 CCAAGCACGGAGATGTAAGTGATTTGTGATTCAA-GACATAACTTTTATATACCCGCTTA 225 *** ************************** ******************* * consensus_1979#0 ---------------- consensus_1979#1 TTCACTAAAAAAAAAA 241 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||