These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1980#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 812 fasta sequence [ATCCGAGAACAGTCCGAAGACTGCTGATTTTTTCAATTGAAACACATACAAATTTGAACTTTTTTTTTCACCTCATCACAAGTAACAAATTAAATAAATTCGAATTAAATTTGAACGGATTACATCGGACTAGTTGGGAATTCGATCTTGCACTGCCTCCTGCTGCTCCCGCCCTTCCCACCGGCCCACCCCCTCAGCCTGCGGAGCAATCTGGGCCGTCCGATGCTCCTGCACCCGCCGGCGACGAACCCCATCATGCACGACGGCTCCGCCGCGCCGCGCATCTCCGACGACGAGCTCGATGACGCCGACGCCGCCTTGCAGAGCTCCACCTCGTTGCTCGGCGCCACCGCGACCACCACCTTCTCCCCCTTGTGCCGCGGCTGCGCCGGTGTCTCGTCGCCGATGATCGCCGCCGGCGTGCCGACCTCGCCGCCGTCGAGGACGAGGAGGTCGTGCTGCAGCCACGCCGTGATCCAGCCGAGGTAGATCATCTCCTCCATGTCGGCCGCCCACCGGTCCCGGAGCGCCTCCAGCCCGTCAAGAACGTCCCTGCCGCTCGACCCCAGCTTCCTCATGCTCCTCTCCACAATCACCTCCACATTCTCATTGTTTGTTCCTTTCTCCTTCTGCAGCTGCAAAGTGAGCTGCTTCATCTCCTCCATGAACTGCTCAAAGCCCTGGCACCTTGTGGCCATTTCTGCCTCCCTGGCATCAAGAGCCAGGACTCTTTCATCAATGGCGTCCAGGTCTTGCTTGTTCTTCTTCCAGATCTTCTTGGACTTGCTCTGCATCGCATCGAACCTAGCTCG] [+] EMBL CB618683 [ATCCGAGAACAGTCCGAAGACTGCTGATTTTTTCAATTGAAACACATACAAATTTGAACTTTTTTTTTCACCTCATCACAAGTAACAAATTAAATAAATTCGAATTAAATTTGAACGGATTACATCGGACTAGTTGGGAATTCGATCTTGCACTGCCTCCTGCTGCTCCCGCCCTTCCCACCGGCCCACCCCCTCAGCCTGCGGAGCAATCTGGGCCGTCCGATGCTCCTGCACCCGCCGGCGACGAACCCCATCATGCACGACGGCTCCGCCGCGCCGCGCATCTCCGACGACGAGCTCGATGACGCCGACGCCGCCTTGCAGAGCTCCACCTCGTTGCTCGGCGCCACCGCGACCACCACCTTCTCCCCCTTGTGCCGCGGCTGCGCCGGTGTCTCGTCGCCGATGATCGCCGCCGGCGTGCCGACCTCGCCGCCGTCGAGGACGAGGAGGTCGTGCTGCAGCCACGCCGTGATCCAGCCGAGGTAGATCATCTCCTCCATGTCGGCCGCCCACCGGTCCCGGAGCGCCTCCAGCCCGTCAAGAACGTCCCTGCCGCTCGACCCCAGCTTCCTCATGCTCCTCTCCACAATCACCTCCACATTCTCATTGTTTGTTCCTTTCTCCTTCTGCAGCTGCAAAGTGAGCTGCTTCATCTCCTCCATGAACTGCTCAAAGCCCTGGCACCTTGTGGCCATTTCTGCCTCCCTGGCATCAAGAGCCAGGACTCTTTCATCAATGGCGTCCAGGTCTTGCTTGTTCTTCTTCCAGATCTTCTTGGACTTGCTCTGCATCGCATCGAACCTAGCTCG] consensusID : consensus_1980#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [TTTTTTTTTTGCTCACAAGCAAAGACAAATCTTTCCTTCTCAACACAACACAATTTACTCAAGTACGTACAACGTGTTCATCCGAGAACAGTCCGAAGACTGTGATTTTTCAATTGAAACACATACAAATTTGAACTTTTTTTTCACCTCATCACAAGTAACAAGGGTTAAATAAATTCGAATTAAATTTGAACGGATTACATCGGACTAGTTGGGAATTCGATCTTGCACTGCTCCTGGTGTCCCGGCCTTCCCACCGGCCACCCCTCAGCTGCGGAGCACATCTGGGCCGTCCGATGCTCCTGGACACCGGCGGGGACGAACCCCATCATGGACGACGGCTCCGCACGCGCGCGCATCTCCGACGAACGAGCTCGA] [-] EMBL BI812652 [TTTTTTTTTTGCTCACAAGCAAAGACAAATCTTTCCTTCTCAACACAACACAATTTACTCAAGTACGTACAACGTGTTCATCCGAGAACAGTCCGAAGACTGTGATTTTTCAATTGAAACACATACAAATTTGAACTTTTTTTTCACCTCATCACAAGTAACAAGGGTTAAATAAATTCGAATTAAATTTGAACGGATTACATCGGACTAGTTGGGAATTCGATCTTGCACTGCTCCTGGTGTCCCGGCCTTCCCACCGGCCACCCCTCAGCTGCGGAGCACATCTGGGCCGTCCGATGCTCCTGGACACCGGCGGGGACGAACCCCATCATGGACGACGGCTCCGCACGCGCGCGCATCTCCGACGAACGAGCTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1980#0 ------------------------------------------------------------ consensus_1980#1 TTTTTTTTTTGCTCACAAGCAAAGACAAATCTTTCCTTCTCAACACAACACAATTTACTC 60 consensus_1980#0 -------------------ATCCGAGAACAGTCCGAAGACTGCTGATTTTTTCAATTGAA 41 consensus_1980#1 AAGTACGTACAACGTGTTCATCCGAGAACAGTCCGAAGACTG-TGATTTTT-CAATTGAA 118 *********************** ******** ******** consensus_1980#0 ACACATACAAATTTGAACTTTTTTTTTCACCTCATCACAAGTAACAAA--TTAAATAAAT 99 consensus_1980#1 ACACATACAAATTTGAACTTTTTTTT-CACCTCATCACAAGTAACAAGGGTTAAATAAAT 177 ************************** ******************** ********** consensus_1980#0 TCGAATTAAATTTGAACGGATTACATCGGACTAGTTGGGAATTCGATCTTGCACTGCCTC 159 consensus_1980#1 TCGAATTAAATTTGAACGGATTACATCGGACTAGTTGGGAATTCGATCTTGCACTGC-TC 236 ********************************************************* ** consensus_1980#0 CTGCTGCTCCCGCCCTTCCCACCGGCCCACCCCCTCAGCCTGCGGAGCA-ATCTGGGCCG 218 consensus_1980#1 CTGGTG-TCCCGGCCTTCCCACCGGCC--ACCCCTCAGC-TGCGGAGCACATCTGGGCCG 292 *** ** ***** ************** ********* ********* ********** consensus_1980#0 TCCGATGCTCCTGCAC-CCGCCGGCGACGAACCCCATCATGCACGACGGCTCCGC-CGCG 276 consensus_1980#1 TCCGATGCTCCTGGACACCGGCGGGGACGAACCCCATCATGGACGACGGCTCCGCACGCG 352 ************* ** *** *** **************** ************* **** consensus_1980#0 CCGCGCATCTCCGACGA-CGAGCTCGATGACGCCGACGCCGCCTTGCAGAGCTCCACCTC 335 consensus_1980#1 C-GCGCATCTCCGACGAACGAGCTCGA--------------------------------- 378 * *************** ********* consensus_1980#0 GTTGCTCGGCGCCACCGCGACCACCACCTTCTCCCCCTTGTGCCGCGGCTGCGCCGGTGT 395 consensus_1980#1 ------------------------------------------------------------ consensus_1980#0 CTCGTCGCCGATGATCGCCGCCGGCGTGCCGACCTCGCCGCCGTCGAGGACGAGGAGGTC 455 consensus_1980#1 ------------------------------------------------------------ consensus_1980#0 GTGCTGCAGCCACGCCGTGATCCAGCCGAGGTAGATCATCTCCTCCATGTCGGCCGCCCA 515 consensus_1980#1 ------------------------------------------------------------ consensus_1980#0 CCGGTCCCGGAGCGCCTCCAGCCCGTCAAGAACGTCCCTGCCGCTCGACCCCAGCTTCCT 575 consensus_1980#1 ------------------------------------------------------------ consensus_1980#0 CATGCTCCTCTCCACAATCACCTCCACATTCTCATTGTTTGTTCCTTTCTCCTTCTGCAG 635 consensus_1980#1 ------------------------------------------------------------ consensus_1980#0 CTGCAAAGTGAGCTGCTTCATCTCCTCCATGAACTGCTCAAAGCCCTGGCACCTTGTGGC 695 consensus_1980#1 ------------------------------------------------------------ consensus_1980#0 CATTTCTGCCTCCCTGGCATCAAGAGCCAGGACTCTTTCATCAATGGCGTCCAGGTCTTG 755 consensus_1980#1 ------------------------------------------------------------ consensus_1980#0 CTTGTTCTTCTTCCAGATCTTCTTGGACTTGCTCTGCATCGCATCGAACCTAGCTCG 812 consensus_1980#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||