These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1989#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2437 fasta sequence [CGGCGCCGCCCCATCTCAGCCGGACACCGCGGCGGCGGCGGCGGCGGACAGGCTGTTCGCGCAGAACCGGCCGGGACGCATTGTTCCGTCGGTCGCGCGATCCAGGCCGGAGGAGAGGGGAGGAAGGAGGGGGTGGGTGAGTCAACCTCTCTCTCTCTCTGATCGGAGGTGGTAGCCCTCCTCCTCGTCGCCGGGAGGCGGCTGATGCGGCGCCCATGGCCACGGCGGTGCTCACCTACCTGCAGAGCCTGTGGTCGCTCTCCGCTCTCCTGAGGGAGGACGACCTGCGGGCGTCCGCGCGGCTGCTGCGGGGCGTCCCCGTGCCGGAGGAGACGAAGCAGTTCGTGCTCGCGCTCCGCGACCGCGAGCCCGGCTCCGGCTCGCGCGGGGGCGTGATCTACATCCTCGCGGCGCAGAACCTGTCCGAGCGGTCGGCCTCCGACGCCGACTCCCTGATCAGGCGGGTGCGCCCCGCCGCCGTGGTCACGCAGCTCGCGCACACGGCGGCCGACGACGTCCGGGCCGAGGAGGAGTGCCTCGAGGGCGGCGGGGCCGGCGGCGTCCCGGCGTCCCCGTTCCAGGTGATCAAGAGGTGCGTCACGGAGAAGAGGAGCAAGGATCAGTACGTCAAGGCGGCGGCGTGCCAGGTCTTGCAGGAGATTTTCGGGGTCGGGTTCTACGGCCATGTCTTGGCCGCGAAGAGAGCCGCGGAGGAGACGGGCTCGTGTTTTCTTTTGCTCGAGTCTCCGTATGAGAGGAATTGCAATGGCGGCGCATCGGGTGGCCAATCTACCATGGAAGAAGGCTCAGGTCAGCAATTGGCGAGTCGCTGCTCGCTCGCTCAAAGTTCAACGGATGATGGCACGGGTGGACAGTCACAGGGTAGCTGCTTGCTCACTCAGAGCACCAGTTCAATCGTAAGCTCGCATGTCAGGAAGATATGCCTTGTGGATGACATTGGGGGACAACTCGTGAAGTCGCTAGCGCCGACCGTTAATTTGTTGATGTCCCAGGCTATCTCTTCTGATGGTGTTTCAGAGTGCAAACTGGCTGAATGCAAGCCATCGGACAGATACGAGGCTCCACCTTTTGCACAGACTGTTTATCCGTTGCTTGCTGATCTTTATGATATATTTGTGGACATTCCGTCAATTGGAAAAGCTATGGCTTCTGCTCAGGAATTGCTCAGACAAGTTCATGATGGGAAGCCAATTTCCACTGAAATGCTGTCTGATGTGTATGTATTTAGGATCGCAATAGAAGCCCTCAGGATAGGTTTAAACAACGCAGGAAGAAGCCACATTGACACCAGAGATAATCATGGTTCAAAAAAATTGGATTTTTCAGAACTCAACTCTGAGGAGAAATGCCATATTCTTCTTGTGCAAGCCCTCAGAAGCCAGGTTAGGGAGTTTGGTTCTGTGGTGGCTGTAGTCGATGCCAGTTGCTTAGCTGGAATAAGGAGACACTGGGATACCCCTGTTCCTTCAGAGATTGCACAATTAGCCAGCAGTTGCTTCAAGCAATACGGCAATAAAAATGACAGTGAGGACAATGAGCTGCCATCATCAGTTGACAGCACAGATAAAAAGAGTTGGGTAGCTGAGAAACCTGTGGTCGTAGTTGGTGCAGGAGGAACAGCGATTCTGGGCTTTTCATCTTTATCAAAAACTGTACAGGCATCTGCCTTTCTTAAGCTGGCTCCCTATAAAACACCGGTGGTCCTGAAGTATGGCTTAATACAGCTGCAAAGGCATGCTTCCATCGTGTTAAGCAAGGTCCTATCGAATGGGGTTTTTAGTGCTAGTTCAAACGCATCCGTTTTACAATTCACAGCTTCATCGGAGAAGATTCGAGCAGTTACTCACACTGTAATTTCATCAGCAAAGAGAACTAGCTTGATGGCTATGCGAACTTCGTTCTACGAAATAATGCAGAAGAGGCAAAAACAACCTTTCAGGATCACTCCTTGGGCAACATTTGGTTGCAGCATGGCTGCATGCGCTGGTCTCCTGATGCATGGAGACGGGATTGAGTGTGCTGCTGAGGTCGCACCTTCTGTTCCCATGATTGCCACTCTGGGACGTGGTCTTGAGATCCTGCGCCTCACATCGCAGGAAGTGAGGCAAACAAGGGGCCAACATATAAAGGAAGCTTTGGGCGCGCTGATGAGCAACTTAAAGAAAACAGCAAAATAAAGACATAACAAAAAAATAACTGAGACTGTATAGATTTCCATCATGCAATTTTGTTGTTAGATAGATTTTTTTTTGTTACCTCTGTACAGTGCATTCTTCTTGCTTTTACTGAGGTAATCGAATTCCTACAATGTGTTTTGGGGCGGTTCTACTTCTGGAGCATTTCATCCATATCAGCCCACCAACCTTCTGTACATACATGTATACAACATATGCCTAATTGACATCTCTAATGCTTT] [+] EMBL AK072099 [CGGCGCCGCCCCATCTCAGCCGGACACCGCGGCGGCGGCGGCGGCGGACAGGCTGTTCGCGCAGAACCGGCCGGGACGCATTGTTCCGTCGGTCGCGCGATCCAGGCCGGAGGAGAGGGGAGGAAGGAGGGGGTGGGTGAGTCAACCTCTCTCTCTCTCTGATCGGAGGTGGTAGCCCTCCTCCTCGTCGCCGGGAGGCGGCTGATGCGGCGCCCATGGCCACGGCGGTGCTCACCTACCTGCAGAGCCTGTGGTCGCTCTCCGCTCTCCTGAGGGAGGACGACCTGCGGGCGTCCGCGCGGCTGCTGCGGGGCGTCCCCGTGCCGGAGGAGACGAAGCAGTTCGTGCTCGCGCTCCGCGACCGCGAGCCCGGCTCCGGCTCGCGCGGGGGCGTGATCTACATCCTCGCGGCGCAGAACCTGTCCGAGCGGTCGGCCTCCGACGCCGACTCCCTGATCAGGCGGGTGCGCCCCGCCGCCGTGGTCACGCAGCTCGCGCACACGGCGGCCGACGACGTCCGGGCCGAGGAGGAGTGCCTCGAGGGCGGCGGGGCCGGCGGCGTCCCGGCGTCCCCGTTCCAGGTGATCAAGAGGTGCGTCACGGAGAAGAGGAGCAAGGATCAGTACGTCAAGGCGGCGGCGTGCCAGGTCTTGCAGGAGATTTTCGGGGTCGGGTTCTACGGCCATGTCTTGGCCGCGAAGAGAGCCGCGGAGGAGACGGGCTCGTGTTTTCTTTTGCTCGAGTCTCCGTATGAGAGGAATTGCAATGGCGGCGCATCGGGTGGCCAATCTACCATGGAAGAAGGCTCAGGTCAGCAATTGGCGAGTCGCTGCTCGCTCGCTCAAAGTTCAACGGATGATGGCACGGGTGGACAGTCACAGGGTAGCTGCTTGCTCACTCAGAGCACCAGTTCAATCGTAAGCTCGCATGTCAGGAAGATATGCCTTGTGGATGACATTGGGGGACAACTCGTGAAGTCGCTAGCGCCGACCGTTAATTTGTTGATGTCCCAGGCTATCTCTTCTGATGGTGTTTCAGAGTGCAAACTGGCTGAATGCAAGCCATCGGACAGATACGAGGCTCCACCTTTTGCACAGACTGTTTATCCGTTGCTTGCTGATCTTTATGATATATTTGTGGACATTCCGTCAATTGGAAAAGCTATGGCTTCTGCTCAGGAATTGCTCAGACAAGTTCATGATGGGAAGCCAATTTCCACTGAAATGCTGTCTGATGTGTATGTATTTAGGATCGCAATAGAAGCCCTCAGGATAGGTTTAAACAACGCAGGAAGAAGCCACATTGACACCAGAGATAATCATGGTTCAAAAAAATTGGATTTTTCAGAACTCAACTCTGAGGAGAAATGCCATATTCTTCTTGTGCAAGCCCTCAGAAGCCAGGTTAGGGAGTTTGGTTCTGTGGTGGCTGTAGTCGATGCCAGTTGCTTAGCTGGAATAAGGAGACACTGGGATACCCCTGTTCCTTCAGAGATTGCACAATTAGCCAGCAGTTGCTTCAAGCAATACGGCAATAAAAATGACAGTGAGGACAATGAGCTGCCATCATCAGTTGACAGCACAGATAAAAAGAGTTGGGTAGCTGAGAAACCTGTGGTCGTAGTTGGTGCAGGAGGAACAGCGATTCTGGGCTTTTCATCTTTATCAAAAACTGTACAGGCATCTGCCTTTCTTAAGCTGGCTCCCTATAAAACACCGGTGGTCCTGAAGTATGGCTTAATACAGCTGCAAAGGCATGCTTCCATCGTGTTAAGCAAGGTCCTATCGAATGGGGTTTTTAGTGCTAGTTCAAACGCATCCGTTTTACAATTCACAGCTTCATCGGAGAAGATTCGAGCAGTTACTCACACTGTAATTTCATCAGCAAAGAGAACTAGCTTGATGGCTATGCGAACTTCGTTCTACGAAATAATGCAGAAGAGGCAAAAACAACCTTTCAGGATCACTCCTTGGGCAACATTTGGTTGCAGCATGGCTGCATGCGCTGGTCTCCTGATGCATGGAGACGGGATTGAGTGTGCTGCTGAGGTCGCACCTTCTGTTCCCATGATTGCCACTCTGGGACGTGGTCTTGAGATCCTGCGCCTCACATCGCAGGAAGTGAGGCAAACAAGGGGCCAACATATAAAGGAAGCTTTGGGCGCGCTGATGAGCAACTTAAAGAAAACAGCAAAATAAAGACATAACAAAAAAATAACTGAGACTGTATAGATTTCCATCATGCAATTTTGTTGTTAGATAGATTTTTTTTTGTTACCTCTGTACAGTGCATTCTTCTTGCTTTTACTGAGGTAATCGAATTCCTACAATGTGTTTTGGGGCGGTTCTACTTCTGGAGCATTTCATCCATATCAGCCCACCAACCTTCTGTACATACATGTATACAACATATGCCTAATTGACATCTCTAATGCTTT] consensusID : consensus_1989#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [AGAAGATTCGACCAGTTACTCACACTGTAATTTCATCACCAAAGAGAACTAGCTTGATGGCTATGCGAACTTCGTTCTACGAAATAATGCAGAAGAGCAAAACACACCTTTCAGGATCACTCCTTGGCAACATTTGGTTGCAGCATGGCTGCATGCGCTGGTCTCCTGATGCACTGGAGACGGGATTGAGTGTGCTGCTGAGGTCGCACCTTCTGTTCCCATGATTGCCACTCTGGGACGTGGTCTTGAGATCCTGCGCCTCACATCGCAGGAAGTGAGCACAACCAAGGGGCCAACATATAAAGGAAGCTTTGGGCGCGCTGATGAGCAACTTAAAGAAAACAGCCAAATAAAGACATAACCAAAAAATAACTGAGACTGTATAGATTTCCATCATGCAATTTTGTTGTTAGATAGATTTTTTTTTGTTACCTCTGTACAGTGCATTCTTCTTGCTTTTACTGAGGTAATCGAATTCCTACATGTGTTTTGGGGCGGTTCAAAAAAAAAAAAA] [+] EMBL BI812455 [AGAAGATTCGACCAGTTACTCACACTGTAATTTCATCACCAAAGAGAACTAGCTTGATGGCTATGCGAACTTCGTTCTACGAAATAATGCAGAAGAGCAAAACACACCTTTCAGGATCACTCCTTGGCAACATTTGGTTGCAGCATGGCTGCATGCGCTGGTCTCCTGATGCACTGGAGACGGGATTGAGTGTGCTGCTGAGGTCGCACCTTCTGTTCCCATGATTGCCACTCTGGGACGTGGTCTTGAGATCCTGCGCCTCACATCGCAGGAAGTGAGCACAACCAAGGGGCCAACATATAAAGGAAGCTTTGGGCGCGCTGATGAGCAACTTAAAGAAAACAGCCAAATAAAGACATAACCAAAAAATAACTGAGACTGTATAGATTTCCATCATGCAATTTTGTTGTTAGATAGATTTTTTTTTGTTACCTCTGTACAGTGCATTCTTCTTGCTTTTACTGAGGTAATCGAATTCCTACATGTGTTTTGGGGCGGTTCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1989#0 CGGCGCCGCCCCATCTCAGCCGGACACCGCGGCGGCGGCGGCGGCGGACAGGCTGTTCGC 60 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 GCAGAACCGGCCGGGACGCATTGTTCCGTCGGTCGCGCGATCCAGGCCGGAGGAGAGGGG 120 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 AGGAAGGAGGGGGTGGGTGAGTCAACCTCTCTCTCTCTCTGATCGGAGGTGGTAGCCCTC 180 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 CTCCTCGTCGCCGGGAGGCGGCTGATGCGGCGCCCATGGCCACGGCGGTGCTCACCTACC 240 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 TGCAGAGCCTGTGGTCGCTCTCCGCTCTCCTGAGGGAGGACGACCTGCGGGCGTCCGCGC 300 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 GGCTGCTGCGGGGCGTCCCCGTGCCGGAGGAGACGAAGCAGTTCGTGCTCGCGCTCCGCG 360 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 ACCGCGAGCCCGGCTCCGGCTCGCGCGGGGGCGTGATCTACATCCTCGCGGCGCAGAACC 420 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 TGTCCGAGCGGTCGGCCTCCGACGCCGACTCCCTGATCAGGCGGGTGCGCCCCGCCGCCG 480 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 TGGTCACGCAGCTCGCGCACACGGCGGCCGACGACGTCCGGGCCGAGGAGGAGTGCCTCG 540 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 AGGGCGGCGGGGCCGGCGGCGTCCCGGCGTCCCCGTTCCAGGTGATCAAGAGGTGCGTCA 600 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 CGGAGAAGAGGAGCAAGGATCAGTACGTCAAGGCGGCGGCGTGCCAGGTCTTGCAGGAGA 660 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 TTTTCGGGGTCGGGTTCTACGGCCATGTCTTGGCCGCGAAGAGAGCCGCGGAGGAGACGG 720 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 GCTCGTGTTTTCTTTTGCTCGAGTCTCCGTATGAGAGGAATTGCAATGGCGGCGCATCGG 780 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 GTGGCCAATCTACCATGGAAGAAGGCTCAGGTCAGCAATTGGCGAGTCGCTGCTCGCTCG 840 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 CTCAAAGTTCAACGGATGATGGCACGGGTGGACAGTCACAGGGTAGCTGCTTGCTCACTC 900 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 AGAGCACCAGTTCAATCGTAAGCTCGCATGTCAGGAAGATATGCCTTGTGGATGACATTG 960 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 GGGGACAACTCGTGAAGTCGCTAGCGCCGACCGTTAATTTGTTGATGTCCCAGGCTATCT 1020 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 CTTCTGATGGTGTTTCAGAGTGCAAACTGGCTGAATGCAAGCCATCGGACAGATACGAGG 1080 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 CTCCACCTTTTGCACAGACTGTTTATCCGTTGCTTGCTGATCTTTATGATATATTTGTGG 1140 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 ACATTCCGTCAATTGGAAAAGCTATGGCTTCTGCTCAGGAATTGCTCAGACAAGTTCATG 1200 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 ATGGGAAGCCAATTTCCACTGAAATGCTGTCTGATGTGTATGTATTTAGGATCGCAATAG 1260 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 AAGCCCTCAGGATAGGTTTAAACAACGCAGGAAGAAGCCACATTGACACCAGAGATAATC 1320 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 ATGGTTCAAAAAAATTGGATTTTTCAGAACTCAACTCTGAGGAGAAATGCCATATTCTTC 1380 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 TTGTGCAAGCCCTCAGAAGCCAGGTTAGGGAGTTTGGTTCTGTGGTGGCTGTAGTCGATG 1440 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 CCAGTTGCTTAGCTGGAATAAGGAGACACTGGGATACCCCTGTTCCTTCAGAGATTGCAC 1500 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 AATTAGCCAGCAGTTGCTTCAAGCAATACGGCAATAAAAATGACAGTGAGGACAATGAGC 1560 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 TGCCATCATCAGTTGACAGCACAGATAAAAAGAGTTGGGTAGCTGAGAAACCTGTGGTCG 1620 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 TAGTTGGTGCAGGAGGAACAGCGATTCTGGGCTTTTCATCTTTATCAAAAACTGTACAGG 1680 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 CATCTGCCTTTCTTAAGCTGGCTCCCTATAAAACACCGGTGGTCCTGAAGTATGGCTTAA 1740 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 TACAGCTGCAAAGGCATGCTTCCATCGTGTTAAGCAAGGTCCTATCGAATGGGGTTTTTA 1800 consensus_1989#1 ------------------------------------------------------------ consensus_1989#0 GTGCTAGTTCAAACGCATCCGTTTTACAATTCACAGCTTCATCGGAGAAGATTCGAGCAG 1860 consensus_1989#1 ---------------------------------------------AGAAGATTCGACCAG 15 *********** *** consensus_1989#0 TTACTCACACTGTAATTTCATCAGCAAAGAGAACTAGCTTGATGGCTATGCGAACTTCGT 1920 consensus_1989#1 TTACTCACACTGTAATTTCATCACCAAAGAGAACTAGCTTGATGGCTATGCGAACTTCGT 75 *********************** ************************************ consensus_1989#0 TCTACGAAATAATGCAGAAGAGGCAAAAACAACCTTTCAGGATCACTCCTTGGGCAACAT 1980 consensus_1989#1 TCTACGAAATAATGCAGAAGAGCAAAACACA-CCTTTCAGGATCACTCCTTGG-CAACAT 133 ********************** *** *** ********************* ****** consensus_1989#0 TTGGTTGCAGCATGGCTGCATGCGCTGGTCTCCTGATGCA-TGGAGACGGGATTGAGTGT 2039 consensus_1989#1 TTGGTTGCAGCATGGCTGCATGCGCTGGTCTCCTGATGCACTGGAGACGGGATTGAGTGT 193 **************************************** ******************* consensus_1989#0 GCTGCTGAGGTCGCACCTTCTGTTCCCATGATTGCCACTCTGGGACGTGGTCTTGAGATC 2099 consensus_1989#1 GCTGCTGAGGTCGCACCTTCTGTTCCCATGATTGCCACTCTGGGACGTGGTCTTGAGATC 253 ************************************************************ consensus_1989#0 CTGCGCCTCACATCGCAGGAAGTGAG-GCAAACAAGGGGCCAACATATAAAGGAAGCTTT 2158 consensus_1989#1 CTGCGCCTCACATCGCAGGAAGTGAGCACAACCAAGGGGCCAACATATAAAGGAAGCTTT 313 ************************** *** **************************** consensus_1989#0 GGGCGCGCTGATGAGCAACTTAAAGAAAACAGCAAAATAAAGACATAACAAAAAAATAAC 2218 consensus_1989#1 GGGCGCGCTGATGAGCAACTTAAAGAAAACAGCCAAATAAAGACATAACCAAAAAATAAC 373 ********************************* *************** ********** consensus_1989#0 TGAGACTGTATAGATTTCCATCATGCAATTTTGTTGTTAGATAGATTTTTTTTTGTTACC 2278 consensus_1989#1 TGAGACTGTATAGATTTCCATCATGCAATTTTGTTGTTAGATAGATTTTTTTTTGTTACC 433 ************************************************************ consensus_1989#0 TCTGTACAGTGCATTCTTCTTGCTTTTACTGAGGTAATCGAATTCCTACAATGTGTTTTG 2338 consensus_1989#1 TCTGTACAGTGCATTCTTCTTGCTTTTACTGAGGTAATCGAATTCCTACA-TGTGTTTTG 492 ************************************************** ********* consensus_1989#0 GGGCGGTTCTACTTCTGGAGCATTTCATCCATATCAGCCCACCAACCTTCTGTACATACA 2398 consensus_1989#1 GGGCGGTTCAAAAAAAAAAAAA-------------------------------------- 514 ********* * * * consensus_1989#0 TGTATACAACATATGCCTAATTGACATCTCTAATGCTTT 2437 consensus_1989#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||