These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2000#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [CCCAGTCTGCATCTGCAAAGAAGCAAATGTTCAATCTATTTTGGTGNATCCCAAGGCATTAACTACAGCAGAGTCACCTGTAGCAATTACGGGAGGTCCGCAATCTAGTTTGGAGCAACCTGATGCTGCTGCTCTGGGCTATCGGGTCAAAAATCCTGAGAAGAAGGCAAAATCCAGAGGCAAATCTCGGAGGCGCAGGTAAATTGTCGGCACACAAGAGCCTAGATGAGCAAACTGTCATTTGGCGTTGTGGTCAGTGGAGATTTGACATTTGTGGTGGTAAGATTTGATTTTGCATGAGATAAAGGCTGGCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGATAGACAATAGCTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAACGTTGTTGTTCGTTTCCAAGGATTTAGGTGAGAATAGCTTGTTTCTTGGAGTTTTAGTAACGCTCATTGGCACCAGAGACCAAATGTTGTAGTTCAGTGACACCAGTGGTTCGGACCATCAAGGGGTAGGAATGCTTGTTTCTTTTTCATGACTAGATATTTTTTTTATGATTAGATCTTTTGTATCTGCACATATGTGGAGGTCCTATTCATGATTGTTTAGAGGGCTTGTGCAGCAGTTGTGCGCCTGAATAAAAAGGTGAACAGATCGTGAAATGAAAAAAA] [+] EMBL AU100637 [CCCAGTCTGCATCTGCAAAGAAGCAAATGTTCAATCTATTTTGGTGNATCCCAAGGCATTAACTACAGCAGAGTCACCTGTAGCAATTACGGGAGGTCCGCAATCTAGTTTGGAGCAACCTGATGCTGCTGCTCTGGGCTATCGGGTCAAAAATCCTGAGAAGAAGGCAAAATCCAGAGGCAAATCTCGGAGGCGCAGGTAAATTGTCGGCACACAAGAGCCTAGATGAGCAAACTGTCATTTGGCGTTGTGGTCAGTGGAGATTTGACATTTGTGGTGGTAAGATTTGATTTTGCATGAGATAAAGGCTGGCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGATAGACAATAGCTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAACGTTGTTGTTCGTTTCCAAGGATTTAGGTGAGAATAGCTTGTTTCTTGGAGTTTTAGTAACGCTCATTGGCACCAGAGACCAAATGTTGTAGTTCAGTGACACCAGTGGTTCGGACCATCAAGGGGTAGGAATGCTTGTTTCTTTTTCATGACTAGATATTTTTTTTATGATTAGATCTTTTGTATCTGCACATATGTGGAGGTCCTATTCATGATTGTTTAGAGGGCTTGTGCAGCAGTTGTGCGCCTGAATAAAAAGGTGAACAGATCGTGAAATGAAAAAAA] consensusID : consensus_2000#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 214 fasta sequence [GAGTAGAAACGTTGTGGTCAGTGGAGATTTGACATTTGTGGTGGTAAGATTTGATTTTGCATGAGATAAAGGCTGTCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGATAGACAATAGCTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAAAAAAAAAAAAAAAAACACTGTCATGCCGTTATGTAGCGTAT] [+] EMBL CF331024 [GAGTAGAAACGTTGTGGTCAGTGGAGATTTGACATTTGTGGTGGTAAGATTTGATTTTGCATGAGATAAAGGCTGTCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGATAGACAATAGCTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAAAAAAAAAAAAAAAAACACTGTCATGCCGTTATGTAGCGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2000#0 CCCAGTCTGCATCTGCAAAGAAGCAAATGTTCAATCTATTTTGGTGNATCCCAAGGCATT 60 consensus_2000#1 ------------------------------------------------------------ consensus_2000#0 AACTACAGCAGAGTCACCTGTAGCAATTACGGGAGGTCCGCAATCTAGTTTGGAGCAACC 120 consensus_2000#1 ------------------------------------------------------------ consensus_2000#0 TGATGCTGCTGCTCTGGGCTATCGGGTCAAAAATCCTGAGAAGAAGGCAAAATCCAGAGG 180 consensus_2000#1 ------------------------------------------------------------ consensus_2000#0 CAAATCTCGGAGGCGCAGGTAAATTGTCGGCACACAAGAGCCTAGATGAGCAAACTGTCA 240 consensus_2000#1 -----------------------------------------------GAGTAGA------ 7 *** * * consensus_2000#0 TTTGGCGTTGTGGTCAGTGGAGATTTGACATTTGTGGTGGTAAGATTTGATTTTGCATGA 300 consensus_2000#1 ---AACGTTGTGGTCAGTGGAGATTTGACATTTGTGGTGGTAAGATTTGATTTTGCATGA 64 ******************************************************* consensus_2000#0 GATAAAGGCTGGCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGATAGACAATAG 360 consensus_2000#1 GATAAAGGCTGTCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGATAGACAATAG 124 *********** ************************************************ consensus_2000#0 CTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAACGTTGTTGTTC 420 consensus_2000#1 CTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAAAAAA------- 177 ************************************************* consensus_2000#0 GTTTCCAAGGATTTAGGTGAGAATAGCTTGTTTCTTGGAGTTTTAGTAACGCTCATTGGC 480 consensus_2000#1 ------AAAAAAAAAAACACTGTCATGCCGTTATGTAGCGTAT----------------- 214 ** * * * *** * * ** * consensus_2000#0 ACCAGAGACCAAATGTTGTAGTTCAGTGACACCAGTGGTTCGGACCATCAAGGGGTAGGA 540 consensus_2000#1 ------------------------------------------------------------ consensus_2000#0 ATGCTTGTTTCTTTTTCATGACTAGATATTTTTTTTATGATTAGATCTTTTGTATCTGCA 600 consensus_2000#1 ------------------------------------------------------------ consensus_2000#0 CATATGTGGAGGTCCTATTCATGATTGTTTAGAGGGCTTGTGCAGCAGTTGTGCGCCTGA 660 consensus_2000#1 ------------------------------------------------------------ consensus_2000#0 ATAAAAAGGTGAACAGATCGTGAAATGAAAAAAA 694 consensus_2000#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||