These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGCCAAAAACAAGGTTTCTTTGAACAAAACAAGGTTTTACTTCCATTCAACCAAAAGTCAAAATTTGTTGAAACCCCCCGCCAACTAAAACACAGGGGGTCACAAACCCAACGACCCACACGGGGCACACAAATTAATATTGTTAGCGTTGTTACCCCCAAAACCATAAAATTTGTACTCGTTTACCCTCCAAACCCGAAAAGGGGGCGGCCCTGGCCCTTGACCCCTTAAACAACTTCCTTGGGGGGAACGGTTTTGCGGGGGGCGTCCTCGGTGTAGGTAACGGCTTCCCGGATAACTTTTTCAAGGAAAATTTTGACCCCCCCGGGGGTTTCCTCTTAAATAACCCCGGAAATG] [+] EMBL CF331624 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGCCAAAAACAAGGTTTCTTTGAACAAAACAAGGTTTTACTTCCATTCAACCAAAAGTCAAAATTTGTTGAAACCCCCCGCCAACTAAAACACAGGGGGTCACAAACCCAACGACCCACACGGGGCACACAAATTAATATTGTTAGCGTTGTTACCCCCAAAACCATAAAATTTGTACTCGTTTACCCTCCAAACCCGAAAAGGGGGCGGCCCTGGCCCTTGACCCCTTAAACAACTTCCTTGGGGGGAACGGTTTTGCGGGGGGCGTCCTCGGTGTAGGTAACGGCTTCCCGGATAACTTTTTCAAGGAAAATTTTGACCCCCCCGGGGGTTTCCTCTTAAATAACCCCGGAAATG] consensusID : consensus_2011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [AACAAAACCCTAACCAACCCTAACGGCTTAAAATTTGGATCAACCACAGGGGGCCGGAAACTCACCCCCCAAACCCGAAAAGGGGGCGGCCCTGGCCCTTGACCCCTTAAACAACTTCCATGGCGGTAACGGTTTTGCGGGGGGCGTCCTCCTTTTAGGTAACGGCTTCCCGGATAACTTTCTCAAGGAAAATCTTGACCCCCCCGGGGGTCTCCTCGTAAATACACCCCGGAAATGCCCT] [+] EMBL CF316222 [AACAAAACCCTAACCAACCCTAACGGCTTAAAATTTGGATCAACCACAGGGGGCCGGAAACTCACCCCCCAAACCCGAAAAGGGGGCGGCCCTGGCCCTTGACCCCTTAAACAACTTCCATGGCGGTAACGGTTTTGCGGGGGGCGTCCTCCTTTTAGGTAACGGCTTCCCGGATAACTTTCTCAAGGAAAATCTTGACCCCCCCGGGGGTCTCCTCGTAAATACACCCCGGAAATGCCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2011#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGCCAAAAACAAGG 60 consensus_2011#1 ------------------------------------------------------------ consensus_2011#0 TTTCTTTGAACAAAACAAGGTTTTACTTCCATTCAACCAAAAGTCAAAATTTGTTGAAAC 120 consensus_2011#1 ------------------------------------------------------------ consensus_2011#0 CCCCCGCCAACTAAAACACAGGGGGTCACAAACCCAACGACCCACACGGGGCACACAAAT 180 consensus_2011#1 ----------------------------------------------AACAAAACCCTAAC 14 ** * ** consensus_2011#0 TAATATTGTTAGCGTTGTTACCCCCAAAACCATAAAATTTGTACTCGTTTACCCTCCAAA 240 consensus_2011#1 CAACCCTAACGGCTTAAAATTTGGATCAACCACAGGGGGC-CGGAAACTCACCCCCCAAA 73 ** * ** * ***** * * **** ***** consensus_2011#0 CCCGAAAAGGGGGCGGCCCTGGCCCTTGACCCCTTAAACAACTTCCTTGGGGGGAACGGT 300 consensus_2011#1 CCCGAAAAGGGGGCGGCCCTGGCCCTTGACCCCTTAAACAACTTCCATGGCGGTAACGGT 133 ********************************************** *** ** ****** consensus_2011#0 TTTGCGGGGGGCGTCCTCGGTGTAGGTAACGGCTTCCCGGATAACTTTTTCAAGGAAAAT 360 consensus_2011#1 TTTGCGGGGGGCGTCCTCCTTTTAGGTAACGGCTTCCCGGATAACTTTCTCAAGGAAAAT 193 ****************** * ************************** *********** consensus_2011#0 TTTGACCCCCCCGGGGGTTTCCTCTTAAATA-ACCCCGGAAATG---- 403 consensus_2011#1 CTTGACCCCCCCGGGGGTCTCCTCGTAAATACACCCCGGAAATGCCCT 241 ***************** ***** ****** ************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||