These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1400 fasta sequence [CACGCATATCGCTTTGCTCTGCTTCGCCTTCGCTTCCGCTTCCGATTGCCGTTTCCGCTTTCGCCGCGCGAAGACGTAAAGAAGGAGGCGGCGGCGACGGCGGTGGTGGGGTTGAGGGATGGGGTACGCGCGGACGGTGAAGGCGGCGACGGCGGCGGCGGCGGCGGTGCTGGTGGCGTTCGGGGTGAGGATGGCGGCGCCGGCTGCGGCGGGGTTCGTGGCGGACGAGCTGCCGCGGGCGCAGGCGGCGGCGGCCACGTGGCTGACGCCGCCGTACCTGTACCTCGTCATCAACGCCATCATCCTGTCCATCGCGGCGTCGTCGCGGTTCCAGCCTAACCGCCCGCAGGCCGCCTCCGCCGACGCGTCGTTGGTGCGGCCGGCTCCGGTTCCGGTTCCAGTCCCGGTGGTGGCGGTGCCCGCGCCGGCGGTGACGATGCCGATGGAGGTGCCCGTTGTGCCGGTGCCGGAGGCGATGGCTCCCGAGCCCATTCCCGTGGAGGTGACGGTGCCGGAGGTGGTGAAGACGGCGCCGGAGGCGGAGGAAGCGGAGGAGAACTTCACGATCTCGAGGTCGGCATGGACGCCACGGCGGAGGAGCACCGCCGAGGCGGAGGCAGAGCATGAGGCGTTGTCCCCCTTCGCGGACCTGACGAACTCGAGGGAGAAGCCACTGGTGTCCACTCGATTCGGCCGGAAGCCGGTCAAGGCGAGCCCAGAAGGGAGCAGCAGGGCGCTGGGGGTGTCGCGGCCGCGGAAGGAGCAGACGCTGGAGAGCACGTGGAAGGCCATCACGGAGGGGCGGGCGCCGCCGCTGGCGCGGCATCTCAAGAAGTCGGACACCTGGGAGACCCGGCCCGGCCGCCGCCAGTCCGGCAGCGGAGGTGGCGAGGACGCGCCACCGCCGGCGACGGCGATGCGGAAGGCGGAGACGTTCAACGAGGCCGCCGGAGGAGGAGGAGGAGGGAAGAAAGTGCGGCGGGAGCCGTCGCTGGGGCAGGACGAGCTGAACCGGAGGGTGGAGGCGTTCATCAACAAGTTCAACATGGAGATGCGGCTGCAGCGGCAGGAGTCGCTCAAGCACTACAACGAAATGATCAGCAGAGGCAGCGTCTACTGACGATGCAGAGCAGCAATAGCAGCAAGCAAGAGCTTGCTTTTTTGTTTTGTTTTGTAGTTTTGGCCTTTTTTTTCTTCTTTTGGGCTCCCTTTTTTTTTTTAATTTCTTCCTTCAACTATCAGTTGTGTAAGAAATGGTTTTGTTCAAGGATGATAGTGATAGTACACAAAAGACAAGACTGTTCATATTAGGGGCGACAGATTAGTGAAGAAAAGAACAACCCAATTTCTATTGGGGTCTTGTGTATTAAATATTAATTAGCCTTTGCTTACTGAGATTG] [+] EMBL AK106307 [CACGCATATCGCTTTGCTCTGCTTCGCCTTCGCTTCCGCTTCCGATTGCCGTTTCCGCTTTCGCCGCGCGAAGACGTAAAGAAGGAGGCGGCGGCGACGGCGGTGGTGGGGTTGAGGGATGGGGTACGCGCGGACGGTGAAGGCGGCGACGGCGGCGGCGGCGGCGGTGCTGGTGGCGTTCGGGGTGAGGATGGCGGCGCCGGCTGCGGCGGGGTTCGTGGCGGACGAGCTGCCGCGGGCGCAGGCGGCGGCGGCCACGTGGCTGACGCCGCCGTACCTGTACCTCGTCATCAACGCCATCATCCTGTCCATCGCGGCGTCGTCGCGGTTCCAGCCTAACCGCCCGCAGGCCGCCTCCGCCGACGCGTCGTTGGTGCGGCCGGCTCCGGTTCCGGTTCCAGTCCCGGTGGTGGCGGTGCCCGCGCCGGCGGTGACGATGCCGATGGAGGTGCCCGTTGTGCCGGTGCCGGAGGCGATGGCTCCCGAGCCCATTCCCGTGGAGGTGACGGTGCCGGAGGTGGTGAAGACGGCGCCGGAGGCGGAGGAAGCGGAGGAGAACTTCACGATCTCGAGGTCGGCATGGACGCCACGGCGGAGGAGCACCGCCGAGGCGGAGGCAGAGCATGAGGCGTTGTCCCCCTTCGCGGACCTGACGAACTCGAGGGAGAAGCCACTGGTGTCCACTCGATTCGGCCGGAAGCCGGTCAAGGCGAGCCCAGAAGGGAGCAGCAGGGCGCTGGGGGTGTCGCGGCCGCGGAAGGAGCAGACGCTGGAGAGCACGTGGAAGGCCATCACGGAGGGGCGGGCGCCGCCGCTGGCGCGGCATCTCAAGAAGTCGGACACCTGGGAGACCCGGCCCGGCCGCCGCCAGTCCGGCAGCGGAGGTGGCGAGGACGCGCCACCGCCGGCGACGGCGATGCGGAAGGCGGAGACGTTCAACGAGGCCGCCGGAGGAGGAGGAGGAGGGAAGAAAGTGCGGCGGGAGCCGTCGCTGGGGCAGGACGAGCTGAACCGGAGGGTGGAGGCGTTCATCAACAAGTTCAACATGGAGATGCGGCTGCAGCGGCAGGAGTCGCTCAAGCACTACAACGAAATGATCAGCAGAGGCAGCGTCTACTGACGATGCAGAGCAGCAATAGCAGCAAGCAAGAGCTTGCTTTTTTGTTTTGTTTTGTAGTTTTGGCCTTTTTTTTCTTCTTTTGGGCTCCCTTTTTTTTTTTAATTTCTTCCTTCAACTATCAGTTGTGTAAGAAATGGTTTTGTTCAAGGATGATAGTGATAGTACACAAAAGACAAGACTGTTCATATTAGGGGCGACAGATTAGTGAAGAAAAGAACAACCCAATTTCTATTGGGGTCTTGTGTATTAAATATTAATTAGCCTTTGCTTACTGAGATTG] consensusID : consensus_2015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [CGGCGCCGGCTGCGGCGGGGTTCGTGGCGGACGAGCTGCCGCGGGCGCAGGCGGCGGCGGCCACGTGGCTGACGCCGCCGTACCTGTACCTCGTCATCAACGCCATCATCCTGTCCATCGCGGCGTCGTCGCGGTTCCAGCCTAACCGCCCGCAGGCCGCCTCCGCCGACGCGTCGTTGGTGCGGCCGGCTCCGGTTCCGGTTCCAGTCCCGGTGGTGGCGGTGCCCGCGCCGGCGGTGACGATGCCGATGGAGGTGCCCGTTGTGCCGGTGCCGGAGGCGATGGCTCCCGAGCCCATTCCCGTGGAGGTGACGGTGCCGGAGGTGGTGAAGACGGCGCCGGAGGCGGAGGAAGCGGAGGAGAACTTCACGATCTCGAGGTCGGCATGGACGCCACGGCGGAGGAGCACCGCCGAGGCGGAGGCAGAGCATGAGGCGTTGTCCCCCTTCGCGGACCTGACGAACTCGAGGGAGAAGCCACTGGTGTCCACTCGATTCGGCCGGAAGCCGGTCAAGGCGAGCCCAGAAGAGAGCAGCAGGGCGCTGGGGTGTCGCGCCAAGCTTATTCCCTTATGAGGTA] [-] EMBL BU673083 [CGGCGCCGGCTGCGGCGGGGTTCGTGGCGGACGAGCTGCCGCGGGCGCAGGCGGCGGCGGCCACGTGGCTGACGCCGCCGTACCTGTACCTCGTCATCAACGCCATCATCCTGTCCATCGCGGCGTCGTCGCGGTTCCAGCCTAACCGCCCGCAGGCCGCCTCCGCCGACGCGTCGTTGGTGCGGCCGGCTCCGGTTCCGGTTCCAGTCCCGGTGGTGGCGGTGCCCGCGCCGGCGGTGACGATGCCGATGGAGGTGCCCGTTGTGCCGGTGCCGGAGGCGATGGCTCCCGAGCCCATTCCCGTGGAGGTGACGGTGCCGGAGGTGGTGAAGACGGCGCCGGAGGCGGAGGAAGCGGAGGAGAACTTCACGATCTCGAGGTCGGCATGGACGCCACGGCGGAGGAGCACCGCCGAGGCGGAGGCAGAGCATGAGGCGTTGTCCCCCTTCGCGGACCTGACGAACTCGAGGGAGAAGCCACTGGTGTCCACTCGATTCGGCCGGAAGCCGGTCAAGGCGAGCCCAGAAGAGAGCAGCAGGGCGCTGGGGTGTCGCGCCAAGCTTATTCCCTTATGAGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2015#0 CACGCATATCGCTTTGCTCTGCTTCGCCTTCGCTTCCGCTTCCGATTGCCGTTTCCGCTT 60 consensus_2015#1 ------------------------------------------------------------ consensus_2015#0 TCGCCGCGCGAAGACGTAAAGAAGGAGGCGGCGGCGACGGCGGTGGTGGGGTTGAGGGAT 120 consensus_2015#1 ------------------------------------------------------------ consensus_2015#0 GGGGTACGCGCGGACGGTGAAGGCGGCGACGGCGGCGGCGGCGGCGGTGCTGGTGGCGTT 180 consensus_2015#1 ------------------------------------------------------------ consensus_2015#0 CGGGGTGAGGATGGCGGCGCCGGCTGCGGCGGGGTTCGTGGCGGACGAGCTGCCGCGGGC 240 consensus_2015#1 --------------CGGCGCCGGCTGCGGCGGGGTTCGTGGCGGACGAGCTGCCGCGGGC 46 ********************************************** consensus_2015#0 GCAGGCGGCGGCGGCCACGTGGCTGACGCCGCCGTACCTGTACCTCGTCATCAACGCCAT 300 consensus_2015#1 GCAGGCGGCGGCGGCCACGTGGCTGACGCCGCCGTACCTGTACCTCGTCATCAACGCCAT 106 ************************************************************ consensus_2015#0 CATCCTGTCCATCGCGGCGTCGTCGCGGTTCCAGCCTAACCGCCCGCAGGCCGCCTCCGC 360 consensus_2015#1 CATCCTGTCCATCGCGGCGTCGTCGCGGTTCCAGCCTAACCGCCCGCAGGCCGCCTCCGC 166 ************************************************************ consensus_2015#0 CGACGCGTCGTTGGTGCGGCCGGCTCCGGTTCCGGTTCCAGTCCCGGTGGTGGCGGTGCC 420 consensus_2015#1 CGACGCGTCGTTGGTGCGGCCGGCTCCGGTTCCGGTTCCAGTCCCGGTGGTGGCGGTGCC 226 ************************************************************ consensus_2015#0 CGCGCCGGCGGTGACGATGCCGATGGAGGTGCCCGTTGTGCCGGTGCCGGAGGCGATGGC 480 consensus_2015#1 CGCGCCGGCGGTGACGATGCCGATGGAGGTGCCCGTTGTGCCGGTGCCGGAGGCGATGGC 286 ************************************************************ consensus_2015#0 TCCCGAGCCCATTCCCGTGGAGGTGACGGTGCCGGAGGTGGTGAAGACGGCGCCGGAGGC 540 consensus_2015#1 TCCCGAGCCCATTCCCGTGGAGGTGACGGTGCCGGAGGTGGTGAAGACGGCGCCGGAGGC 346 ************************************************************ consensus_2015#0 GGAGGAAGCGGAGGAGAACTTCACGATCTCGAGGTCGGCATGGACGCCACGGCGGAGGAG 600 consensus_2015#1 GGAGGAAGCGGAGGAGAACTTCACGATCTCGAGGTCGGCATGGACGCCACGGCGGAGGAG 406 ************************************************************ consensus_2015#0 CACCGCCGAGGCGGAGGCAGAGCATGAGGCGTTGTCCCCCTTCGCGGACCTGACGAACTC 660 consensus_2015#1 CACCGCCGAGGCGGAGGCAGAGCATGAGGCGTTGTCCCCCTTCGCGGACCTGACGAACTC 466 ************************************************************ consensus_2015#0 GAGGGAGAAGCCACTGGTGTCCACTCGATTCGGCCGGAAGCCGGTCAAGGCGAGCCCAGA 720 consensus_2015#1 GAGGGAGAAGCCACTGGTGTCCACTCGATTCGGCCGGAAGCCGGTCAAGGCGAGCCCAGA 526 ************************************************************ consensus_2015#0 AGGGAGCAGCAGGGCGCTGGGGGTGTCGCGGCCGCGGAAGGAGCAGACGCTGGAGAGCAC 780 consensus_2015#1 AGAGAGCAGCAGGGCGCTGGGG-TGTCGCGCCAAGCTTATTCCCTTATGAGGTA------ 579 ** ******************* ******* * * * * * * * consensus_2015#0 GTGGAAGGCCATCACGGAGGGGCGGGCGCCGCCGCTGGCGCGGCATCTCAAGAAGTCGGA 840 consensus_2015#1 ------------------------------------------------------------ consensus_2015#0 CACCTGGGAGACCCGGCCCGGCCGCCGCCAGTCCGGCAGCGGAGGTGGCGAGGACGCGCC 900 consensus_2015#1 ------------------------------------------------------------ consensus_2015#0 ACCGCCGGCGACGGCGATGCGGAAGGCGGAGACGTTCAACGAGGCCGCCGGAGGAGGAGG 960 consensus_2015#1 ------------------------------------------------------------ consensus_2015#0 AGGAGGGAAGAAAGTGCGGCGGGAGCCGTCGCTGGGGCAGGACGAGCTGAACCGGAGGGT 1020 consensus_2015#1 ------------------------------------------------------------ consensus_2015#0 GGAGGCGTTCATCAACAAGTTCAACATGGAGATGCGGCTGCAGCGGCAGGAGTCGCTCAA 1080 consensus_2015#1 ------------------------------------------------------------ consensus_2015#0 GCACTACAACGAAATGATCAGCAGAGGCAGCGTCTACTGACGATGCAGAGCAGCAATAGC 1140 consensus_2015#1 ------------------------------------------------------------ consensus_2015#0 AGCAAGCAAGAGCTTGCTTTTTTGTTTTGTTTTGTAGTTTTGGCCTTTTTTTTCTTCTTT 1200 consensus_2015#1 ------------------------------------------------------------ consensus_2015#0 TGGGCTCCCTTTTTTTTTTTAATTTCTTCCTTCAACTATCAGTTGTGTAAGAAATGGTTT 1260 consensus_2015#1 ------------------------------------------------------------ consensus_2015#0 TGTTCAAGGATGATAGTGATAGTACACAAAAGACAAGACTGTTCATATTAGGGGCGACAG 1320 consensus_2015#1 ------------------------------------------------------------ consensus_2015#0 ATTAGTGAAGAAAAGAACAACCCAATTTCTATTGGGGTCTTGTGTATTAAATATTAATTA 1380 consensus_2015#1 ------------------------------------------------------------ consensus_2015#0 GCCTTTGCTTACTGAGATTG 1400 consensus_2015#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||