These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2031 fasta sequence [CACCGCCGCATCCTCCTCCGCCGCATCTCCCCTCCTCCCGTCGCCTCCCCAGCAACCTCCGCCGCCGCCGCCACGACGACGAGCCTCCGAGTCCGACCACCGGCAATGGCGCCAACCCTGCCTTCCGCACGCCGCACCTCCGCACCGCCTACCGCAAGCCGGTGCCACCCGTGGCGGCGACGGGGGAGGGCGAGGCGGTCCTCGCCGCCGCTCCTCACCTTCCTCTTCCCCATCGGCCTTCTCCCCGATCGCCTCCCTCGTCCAACTACTCCTCCCTTCCAGAGAAGCGCTGCCACTGTGATCCTTTTCCAGACGCGAGCTCGAAGGCGCTGGTTGCCCCCAAGCTCGAAGAGGTCGAGGAGGTGGTTAGGTTTTGCGCCGCCGAGCTCAGCGAAGAGGCCAAGGAGATGAGGCACACCTCCTCCCCCTCCCCCTTTTCTCCGGTTGGTGGTCAGGCTTTGGGCTGTTCGATCTGGCGCCGCTGAGCTCAGCACGATGAAGGCCGAGGAGGCGAGGCGCACCTCCACCGTTGCCCCTCGCCTCCCCATCTTCCTCTCCCTGCCCGATCTGGCCCGAGGACTCGAGGAGTGGAGAGGGGGAGGAGCCACGGTGATGTTGTGGTCGCTCGCCGAGTCGCCGTTGTCTGCAGCTTCTGGAAAGAAATCAAGATCTTGGATTATTGCCTTAAGCGAGGAAAAGGGAAAAGTATACAGGTGCCCTTGCATGACTTTGCTTGTTTGTACAGGACATCATATAGCCTATCTCCCTTATCATGGTAGTTTGACTGGTTGTAAGGATCTTAATTAGTTATATCCAATTTACAGATTTATTGATTATTTGAACAACTAGGGCAATTTGTCCTGTTACTACAAATTTTAGAGCAATTTTTTGTGTATAACTTTTTAATCTCCAAAAACATGCCTTAAGCTGACTATATAAAAGTTTAGTTGGTGAAAGTTCAGTTTAGTTTGGAACTTTGGAGTACCATTTATCTTGAAACATAGAGGAAGTGCATGACACTGAATATATATTAATGCAAAAGGACTGTTTGAGTGAGGTAATAAATGAGAAATAGTCCAATAAAGAACATATCAACACTAATTAGATGATGCAGTAGTAGGAAACATATATGATGATTTCAGTCATGTGCTTATGGTTTTATCCACCATCTACTTTTTTTAATCTTTTATTCATACTGCTGCTTAATTAGTGGATGCAATACTAGAATGGAAATGTATGGCGTGAAACTTCTAGCCCGCTTTTGCTTTTATTCTGAATGTAGCTGCCAAGCTAGTCTTCAGTATTTGCAGTACTCATTGAGCTTTGATTTGGTCCTCAGTTAGTGTTAATACTTTTGCCCCTTCTACAACTTATTTACTCCGCATCTCTCTCTTTCTGTTTTGGGCACAGGAGAAAATATTAGTTCTCTGAAGTAGACAGTGTGTTCCTTAATAAATATCAGGGGTCTCATTAGTTGCCCAAAGGCTTATTATAAGCCGTAACGGTTTATTAGCGACTAGAAAATAATTTGTGTCTAAAAATTTTATATATGTGTTGTTAGTGACTTAAAAGGCAATGCTGAAAAAAAAACTACGTTGAAAATATCTCAAAATCAACTTCAAAATTAAGTTTCAAAATTCAAATGTTGGCTTTGGCTTTTTATGCCAACCGATGTGGCTTTGGCATACCTTTCAGTTAGTAGCTAATGACAGTCTTTGATAGCATATATTGCTTTTCATCCAGTATTCATGGCATTCAATATTATTATCTGATAATGTAAGTCGATCATTTTGCAGGTCTGATCTTTGTTGATCTTGCACTTACCTTGGTGGTTACATGCATTTTGGGGTGTGCCTTTGGCGATTTTGAACAGGCCTAGATATATTGCTTTGCTATGTTGACGTTTATTAGAGTAGATAATTGTATTTCTCGTAATGTGGAAATGGCAAAGATTATGTATTGCTACAAAATTGTATAGTTGCTCTTCCCAATTCCATGTACAAGGCATTTCTCATTGAATGGCAAGATCAT] [+] EMBL AK107561 [CACCGCCGCATCCTCCTCCGCCGCATCTCCCCTCCTCCCGTCGCCTCCCCAGCAACCTCCGCCGCCGCCGCCACGACGACGAGCCTCCGAGTCCGACCACCGGCAATGGCGCCAACCCTGCCTTCCGCACGCCGCACCTCCGCACCGCCTACCGCAAGCCGGTGCCACCCGTGGCGGCGACGGGGGAGGGCGAGGCGGTCCTCGCCGCCGCTCCTCACCTTCCTCTTCCCCATCGGCCTTCTCCCCGATCGCCTCCCTCGTCCAACTACTCCTCCCTTCCAGAGAAGCGCTGCCACTGTGATCCTTTTCCAGACGCGAGCTCGAAGGCGCTGGTTGCCCCCAAGCTCGAAGAGGTCGAGGAGGTGGTTAGGTTTTGCGCCGCCGAGCTCAGCGAAGAGGCCAAGGAGATGAGGCACACCTCCTCCCCCTCCCCCTTTTCTCCGGTTGGTGGTCAGGCTTTGGGCTGTTCGATCTGGCGCCGCTGAGCTCAGCACGATGAAGGCCGAGGAGGCGAGGCGCACCTCCACCGTTGCCCCTCGCCTCCCCATCTTCCTCTCCCTGCCCGATCTGGCCCGAGGACTCGAGGAGTGGAGAGGGGGAGGAGCCACGGTGATGTTGTGGTCGCTCGCCGAGTCGCCGTTGTCTGCAGCTTCTGGAAAGAAATCAAGATCTTGGATTATTGCCTTAAGCGAGGAAAAGGGAAAAGTATACAGGTGCCCTTGCATGACTTTGCTTGTTTGTACAGGACATCATATAGCCTATCTCCCTTATCATGGTAGTTTGACTGGTTGTAAGGATCTTAATTAGTTATATCCAATTTACAGATTTATTGATTATTTGAACAACTAGGGCAATTTGTCCTGTTACTACAAATTTTAGAGCAATTTTTTGTGTATAACTTTTTAATCTCCAAAAACATGCCTTAAGCTGACTATATAAAAGTTTAGTTGGTGAAAGTTCAGTTTAGTTTGGAACTTTGGAGTACCATTTATCTTGAAACATAGAGGAAGTGCATGACACTGAATATATATTAATGCAAAAGGACTGTTTGAGTGAGGTAATAAATGAGAAATAGTCCAATAAAGAACATATCAACACTAATTAGATGATGCAGTAGTAGGAAACATATATGATGATTTCAGTCATGTGCTTATGGTTTTATCCACCATCTACTTTTTTTAATCTTTTATTCATACTGCTGCTTAATTAGTGGATGCAATACTAGAATGGAAATGTATGGCGTGAAACTTCTAGCCCGCTTTTGCTTTTATTCTGAATGTAGCTGCCAAGCTAGTCTTCAGTATTTGCAGTACTCATTGAGCTTTGATTTGGTCCTCAGTTAGTGTTAATACTTTTGCCCCTTCTACAACTTATTTACTCCGCATCTCTCTCTTTCTGTTTTGGGCACAGGAGAAAATATTAGTTCTCTGAAGTAGACAGTGTGTTCCTTAATAAATATCAGGGGTCTCATTAGTTGCCCAAAGGCTTATTATAAGCCGTAACGGTTTATTAGCGACTAGAAAATAATTTGTGTCTAAAAATTTTATATATGTGTTGTTAGTGACTTAAAAGGCAATGCTGAAAAAAAAACTACGTTGAAAATATCTCAAAATCAACTTCAAAATTAAGTTTCAAAATTCAAATGTTGGCTTTGGCTTTTTATGCCAACCGATGTGGCTTTGGCATACCTTTCAGTTAGTAGCTAATGACAGTCTTTGATAGCATATATTGCTTTTCATCCAGTATTCATGGCATTCAATATTATTATCTGATAATGTAAGTCGATCATTTTGCAGGTCTGATCTTTGTTGATCTTGCACTTACCTTGGTGGTTACATGCATTTTGGGGTGTGCCTTTGGCGATTTTGAACAGGCCTAGATATATTGCTTTGCTATGTTGACGTTTATTAGAGTAGATAATTGTATTTCTCGTAATGTGGAAATGGCAAAGATTATGTATTGCTACAAAATTGTATAGTTGCTCTTCCCAATTCCATGTACAAGGCATTTCTCATTGAATGGCAAGATCAT] consensusID : consensus_206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 958 fasta sequence [TCACCGCCGCATCCTCCTCCGCCGCATCTCCCCTCCTCCCGTCGCCTCCCCAGCAACCTCCGCCGCCGCCGCCACGACGACGAGCCTCCGAGTCCGACCACCGGCAATGGCGCCAACCCTGCCTTCCGCACGCCGCACCTCCGCACCGCCTACCGCAAGCCGGTGCCACCCGTGGCGGCGACGGGGGAGGGCGAGGCGGTCCTCGCCGCCGCTCCTCACCTTCCTCTTCCCCATCGGCCTTCTCCCCGATCGCCTCCCTCGTCCAACTACTCCTCCCTTCCAGAGAAGCGCTGCCACTGTGATCCTTTTCCAGACGCGAGCTCGAAGGCGCTGGTTGCCCCCAAGCTCGAAGAGGTCGAGGAGGTGGTTAGGTTTTGCGCCGCCGAGCTCAGCGAAGAGGCCAAGGAGATGAGGCACACCTCCTCCCCCTCCCCCTTTTCTCCGGTTGGTGGTCAGGCTTTGGGCTGTTCGATCTGGCGCCGCTGAGCTCAGCACGATGAAGGCCGAGGAGGCGAGGCGCACCTCCACCGTTGCCCCTCGCCTCCCCATCTTCCTCTCCCTGCCCGATCTGGCCCGAGGACTCGAGGAGTGGAGAGGGGGAGGAGCCACGGTGATGTTGTGGTCGCTCGCCGAGTCGCCGTTGTCTGCAGCTTCTGGAAAGAAATCAAGATCTTGGATTATTGCCTTAAGCGAGGAAAAGGGAAAAGTATACAGGTCTGATCTTTGTTGATCTTGCACTTACCTTGGTGGTTACATGCATTTTGGGGTGTGCCTTTGGCGATTTTGAACAGGCCTAGATATATTGCTTTGCTATGTTGACGTTTATTAGAGTAGATAATTGTATTTCTCGTAATGTGGAAATGGCAAAGATTATGTATTGCTACAAAATTGTATAGTTGCTCTTCCCAATTCCATGTACAAGGCATTTCTCATTGAATGGCAAGATCATGTATTGCTG] [+] EMBL AK067336 [TCACCGCCGCATCCTCCTCCGCCGCATCTCCCCTCCTCCCGTCGCCTCCCCAGCAACCTCCGCCGCCGCCGCCACGACGACGAGCCTCCGAGTCCGACCACCGGCAATGGCGCCAACCCTGCCTTCCGCACGCCGCACCTCCGCACCGCCTACCGCAAGCCGGTGCCACCCGTGGCGGCGACGGGGGAGGGCGAGGCGGTCCTCGCCGCCGCTCCTCACCTTCCTCTTCCCCATCGGCCTTCTCCCCGATCGCCTCCCTCGTCCAACTACTCCTCCCTTCCAGAGAAGCGCTGCCACTGTGATCCTTTTCCAGACGCGAGCTCGAAGGCGCTGGTTGCCCCCAAGCTCGAAGAGGTCGAGGAGGTGGTTAGGTTTTGCGCCGCCGAGCTCAGCGAAGAGGCCAAGGAGATGAGGCACACCTCCTCCCCCTCCCCCTTTTCTCCGGTTGGTGGTCAGGCTTTGGGCTGTTCGATCTGGCGCCGCTGAGCTCAGCACGATGAAGGCCGAGGAGGCGAGGCGCACCTCCACCGTTGCCCCTCGCCTCCCCATCTTCCTCTCCCTGCCCGATCTGGCCCGAGGACTCGAGGAGTGGAGAGGGGGAGGAGCCACGGTGATGTTGTGGTCGCTCGCCGAGTCGCCGTTGTCTGCAGCTTCTGGAAAGAAATCAAGATCTTGGATTATTGCCTTAAGCGAGGAAAAGGGAAAAGTATACAGGTCTGATCTTTGTTGATCTTGCACTTACCTTGGTGGTTACATGCATTTTGGGGTGTGCCTTTGGCGATTTTGAACAGGCCTAGATATATTGCTTTGCTATGTTGACGTTTATTAGAGTAGATAATTGTATTTCTCGTAATGTGGAAATGGCAAAGATTATGTATTGCTACAAAATTGTATAGTTGCTCTTCCCAATTCCATGTACAAGGCATTTCTCATTGAATGGCAAGATCATGTATTGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_206#0 -CACCGCCGCATCCTCCTCCGCCGCATCTCCCCTCCTCCCGTCGCCTCCCCAGCAACCTC 59 consensus_206#1 TCACCGCCGCATCCTCCTCCGCCGCATCTCCCCTCCTCCCGTCGCCTCCCCAGCAACCTC 60 *********************************************************** consensus_206#0 CGCCGCCGCCGCCACGACGACGAGCCTCCGAGTCCGACCACCGGCAATGGCGCCAACCCT 119 consensus_206#1 CGCCGCCGCCGCCACGACGACGAGCCTCCGAGTCCGACCACCGGCAATGGCGCCAACCCT 120 ************************************************************ consensus_206#0 GCCTTCCGCACGCCGCACCTCCGCACCGCCTACCGCAAGCCGGTGCCACCCGTGGCGGCG 179 consensus_206#1 GCCTTCCGCACGCCGCACCTCCGCACCGCCTACCGCAAGCCGGTGCCACCCGTGGCGGCG 180 ************************************************************ consensus_206#0 ACGGGGGAGGGCGAGGCGGTCCTCGCCGCCGCTCCTCACCTTCCTCTTCCCCATCGGCCT 239 consensus_206#1 ACGGGGGAGGGCGAGGCGGTCCTCGCCGCCGCTCCTCACCTTCCTCTTCCCCATCGGCCT 240 ************************************************************ consensus_206#0 TCTCCCCGATCGCCTCCCTCGTCCAACTACTCCTCCCTTCCAGAGAAGCGCTGCCACTGT 299 consensus_206#1 TCTCCCCGATCGCCTCCCTCGTCCAACTACTCCTCCCTTCCAGAGAAGCGCTGCCACTGT 300 ************************************************************ consensus_206#0 GATCCTTTTCCAGACGCGAGCTCGAAGGCGCTGGTTGCCCCCAAGCTCGAAGAGGTCGAG 359 consensus_206#1 GATCCTTTTCCAGACGCGAGCTCGAAGGCGCTGGTTGCCCCCAAGCTCGAAGAGGTCGAG 360 ************************************************************ consensus_206#0 GAGGTGGTTAGGTTTTGCGCCGCCGAGCTCAGCGAAGAGGCCAAGGAGATGAGGCACACC 419 consensus_206#1 GAGGTGGTTAGGTTTTGCGCCGCCGAGCTCAGCGAAGAGGCCAAGGAGATGAGGCACACC 420 ************************************************************ consensus_206#0 TCCTCCCCCTCCCCCTTTTCTCCGGTTGGTGGTCAGGCTTTGGGCTGTTCGATCTGGCGC 479 consensus_206#1 TCCTCCCCCTCCCCCTTTTCTCCGGTTGGTGGTCAGGCTTTGGGCTGTTCGATCTGGCGC 480 ************************************************************ consensus_206#0 CGCTGAGCTCAGCACGATGAAGGCCGAGGAGGCGAGGCGCACCTCCACCGTTGCCCCTCG 539 consensus_206#1 CGCTGAGCTCAGCACGATGAAGGCCGAGGAGGCGAGGCGCACCTCCACCGTTGCCCCTCG 540 ************************************************************ consensus_206#0 CCTCCCCATCTTCCTCTCCCTGCCCGATCTGGCCCGAGGACTCGAGGAGTGGAGAGGGGG 599 consensus_206#1 CCTCCCCATCTTCCTCTCCCTGCCCGATCTGGCCCGAGGACTCGAGGAGTGGAGAGGGGG 600 ************************************************************ consensus_206#0 AGGAGCCACGGTGATGTTGTGGTCGCTCGCCGAGTCGCCGTTGTCTGCAGCTTCTGGAAA 659 consensus_206#1 AGGAGCCACGGTGATGTTGTGGTCGCTCGCCGAGTCGCCGTTGTCTGCAGCTTCTGGAAA 660 ************************************************************ consensus_206#0 GAAATCAAGATCTTGGATTATTGCCTTAAGCGAGGAAAAGGGAAAAGTATACAGGTGCCC 719 consensus_206#1 GAAATCAAGATCTTGGATTATTGCCTTAAGCGAGGAAAAGGGAAAAGTATACAGGTC--- 717 ******************************************************** consensus_206#0 TTGCATGACTTTGCTTGTTTGTACAGGACATCATATAGCCTATCTCCCTTATCATGGTAG 779 consensus_206#1 -----TGATCTTTGTTGATCTTGCACT-TACCTTGGTGGTTACATGCATT-TTGGGGT-G 769 *** ** *** * * ** * * * * ** * * ** * *** * consensus_206#0 TTTGACTGGTTGTAAGGATCTTAATTAGTTATATCCAATTTACAGATTTATTGATTATTT 839 consensus_206#1 TGCCTTTGGCGATTTTGAACAGGCCTAGATATATT-GCTTTGCTATGTTGACGTTTATTA 828 * *** * ** * *** ***** *** * ** * ***** consensus_206#0 GAACAACTAGGGCAATTTGTCCTGTTACTACAAATTTTAGAGCAATTTTTTGTGTATAAC 899 consensus_206#1 GAGTAGATAATTGTATTTCTCGTAATG-TGGAAATGGCAAAGA------TTATGTATTGC 881 ** * ** **** ** * * * **** * ** ** ***** * consensus_206#0 TTTTTAATCTCCAAAAACATGCCTTAAGCTGACTATATAAAAGTTTAGTTGGTGAAAGTT 959 consensus_206#1 TACAAAATTGTATAGTTGCTCTTCCCAATTCCATGTACAAGGCATTTCTCATTGAATGGC 941 * *** * * * * * ** ** ** * **** * consensus_206#0 CAGTTTAGTTTGGAACTTTGGAGTACCATTTATCTTGAAACATAGAGGAAGTGCATGACA 1019 consensus_206#1 AAGATCA---TGTATTGCTG---------------------------------------- 958 ** * * ** * ** consensus_206#0 CTGAATATATATTAATGCAAAAGGACTGTTTGAGTGAGGTAATAAATGAGAAATAGTCCA 1079 consensus_206#1 ------------------------------------------------------------ consensus_206#0 ATAAAGAACATATCAACACTAATTAGATGATGCAGTAGTAGGAAACATATATGATGATTT 1139 consensus_206#1 ------------------------------------------------------------ consensus_206#0 CAGTCATGTGCTTATGGTTTTATCCACCATCTACTTTTTTTAATCTTTTATTCATACTGC 1199 consensus_206#1 ------------------------------------------------------------ consensus_206#0 TGCTTAATTAGTGGATGCAATACTAGAATGGAAATGTATGGCGTGAAACTTCTAGCCCGC 1259 consensus_206#1 ------------------------------------------------------------ consensus_206#0 TTTTGCTTTTATTCTGAATGTAGCTGCCAAGCTAGTCTTCAGTATTTGCAGTACTCATTG 1319 consensus_206#1 ------------------------------------------------------------ consensus_206#0 AGCTTTGATTTGGTCCTCAGTTAGTGTTAATACTTTTGCCCCTTCTACAACTTATTTACT 1379 consensus_206#1 ------------------------------------------------------------ consensus_206#0 CCGCATCTCTCTCTTTCTGTTTTGGGCACAGGAGAAAATATTAGTTCTCTGAAGTAGACA 1439 consensus_206#1 ------------------------------------------------------------ consensus_206#0 GTGTGTTCCTTAATAAATATCAGGGGTCTCATTAGTTGCCCAAAGGCTTATTATAAGCCG 1499 consensus_206#1 ------------------------------------------------------------ consensus_206#0 TAACGGTTTATTAGCGACTAGAAAATAATTTGTGTCTAAAAATTTTATATATGTGTTGTT 1559 consensus_206#1 ------------------------------------------------------------ consensus_206#0 AGTGACTTAAAAGGCAATGCTGAAAAAAAAACTACGTTGAAAATATCTCAAAATCAACTT 1619 consensus_206#1 ------------------------------------------------------------ consensus_206#0 CAAAATTAAGTTTCAAAATTCAAATGTTGGCTTTGGCTTTTTATGCCAACCGATGTGGCT 1679 consensus_206#1 ------------------------------------------------------------ consensus_206#0 TTGGCATACCTTTCAGTTAGTAGCTAATGACAGTCTTTGATAGCATATATTGCTTTTCAT 1739 consensus_206#1 ------------------------------------------------------------ consensus_206#0 CCAGTATTCATGGCATTCAATATTATTATCTGATAATGTAAGTCGATCATTTTGCAGGTC 1799 consensus_206#1 ------------------------------------------------------------ consensus_206#0 TGATCTTTGTTGATCTTGCACTTACCTTGGTGGTTACATGCATTTTGGGGTGTGCCTTTG 1859 consensus_206#1 ------------------------------------------------------------ consensus_206#0 GCGATTTTGAACAGGCCTAGATATATTGCTTTGCTATGTTGACGTTTATTAGAGTAGATA 1919 consensus_206#1 ------------------------------------------------------------ consensus_206#0 ATTGTATTTCTCGTAATGTGGAAATGGCAAAGATTATGTATTGCTACAAAATTGTATAGT 1979 consensus_206#1 ------------------------------------------------------------ consensus_206#0 TGCTCTTCCCAATTCCATGTACAAGGCATTTCTCATTGAATGGCAAGATCAT 2031 consensus_206#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||