These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence [AAAGGCTGCGACAGGAGGTCAAGCTAGGAGTTGTGTTGAAAGAGCAAATGGACTACCTTACTCACTGGGCAGCATTGGAAACAGAACATTCTACTTCTTTATCTAGTGCAATTGAAGCTCTTAGAGCAAGCACACTACGGCTTCCAGTTACAGGAGGAGCAAAGGCTGACGTTTTTACCGTTAAGAATGCTGTCAGTTCAGCAGTTGACATTATGCAAGCAATGGGCTCATCCGTCTGCTACTTGTTATCAAAGTTACAGGCTACACACTCTCTGGTTACAGAACTTTCAGCCGTTGCTGCCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACCGCGGCAGCCCTACAGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAATGCATGTATGTCTAACTAATTAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGTAGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTCTAGTTAAGGGGTTTACCCATTTCTTGTTTTGTACTTACTGCATGCCCCTCTTTGTGTCTGTACAATTTACCTGGAGAGAGAAGGGGCGTGGGGCCGCAAATGGTGGGTGAACGGGCTGGGGGCGCGCGCCGGGGGTGGCGCCTTTCTCCTCTCCTCNTCTNTCTCCCCGCGCCGTTCTTTCCCGCCTCTTTCCCGCCCGCCTTCNTCCTTCTCTTCCCCCCCCCCCCCCTNTTGCTCCCCCNCCNCAATATTTTCTCCTCNTTTTTCCTTCCTTCTCTCTCCCACAC] [+] EMBL CA757950 [AAAGGCTGCGACAGGAGGTCAAGCTAGGAGTTGTGTTGAAAGAGCAAATGGACTACCTTACTCACTGGGCAGCATTGGAAACAGAACATTCTACTTCTTTATCTAGTGCAATTGAAGCTCTTAGAGCAAGCACACTACGGCTTCCAGTTACAGGAGGAGCAAAGGCTGACGTTTTTACCGTTAAGAATGCTGTCAGTTCAGCAGTTGACATTATGCAAGCAATGGGCTCATCCGTCTGCTACTTGTTATCAAAGTTACAGGCTACACACTCTCTGGTTACAGAACTTTCAGCCGTTGCTGCCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACCGCGGCAGCCCTACAGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAATGCATGTATGTCTAACTAATTAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGTAGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTCTAGTTAAGGGGTTTACCCATTTCTTGTTTTGTACTTACTGCATGCCCCTCTTTGTGTCTGTACAATTTACCTGGAGAGAGAAGGGGCGTGGGGCCGCAAATGGTGGGTGAACGGGCTGGGGGCGCGCGCCGGGGGTGGCGCCTTTCTCCTCTCCTCNTCTNTCTCCCCGCGCCGTTCTTTCCCGCCTCTTTCCCGCCCGCCTTCNTCCTTCTCTTCCCCCCCCCCCCCCTNTTGCTCCCCCNCCNCAATATTTTCTCCTCNTTTTTCCTTCCTTCTCTCTCCCACAC] consensusID : consensus_2078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [CCGCTTTCAGCCGTTGCTGCCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACTGCGGCAGCCCTACAGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAATGCATGTATGTCTAACTAAGAAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGTAGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTCTAGTTAGGTGTTTTCCCATTTCTTCTTTTGTACTTCCTGCATGCCCCTTTTCTGTCTCTACAATTTACATGGAAGAGAAGTGCATCAACACGAAATCATGGATCAATCCATGGTGACGAGCCTGTCAATGTTTTATTTATAGCGGCCTACAAACTGAGGACGCCAACGTCCTGAAACTGAAAACTTGTTGTAAAGATTAGCTCTTCTCTTCCCCNTCTTACCCAAA] [+] EMBL BQ908861 [CCGCTTTCAGCCGTTGCTGCCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACTGCGGCAGCCCTACAGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAATGCATGTATGTCTAACTAAGAAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGTAGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTCTAGTTAGGTGTTTTCCCATTTCTTCTTTTGTACTTCCTGCATGCCCCTTTTCTGTCTCTACAATTTACATGGAAGAGAAGTGCATCAACACGAAATCATGGATCAATCCATGGTGACGAGCCTGTCAATGTTTTATTTATAGCGGCCTACAAACTGAGGACGCCAACGTCCTGAAACTGAAAACTTGTTGTAAAGATTAGCTCTTCTCTTCCCCNTCTTACCCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2078#0 AAAGGCTGCGACAGGAGGTCAAGCTAGGAGTTGTGTTGAAAGAGCAAATGGACTACCTTA 60 consensus_2078#1 ------------------------------------------------------------ consensus_2078#0 CTCACTGGGCAGCATTGGAAACAGAACATTCTACTTCTTTATCTAGTGCAATTGAAGCTC 120 consensus_2078#1 ------------------------------------------------------------ consensus_2078#0 TTAGAGCAAGCACACTACGGCTTCCAGTTACAGGAGGAGCAAAGGCTGACGTTTTTACCG 180 consensus_2078#1 ------------------------------------------------------------ consensus_2078#0 TTAAGAATGCTGTCAGTTCAGCAGTTGACATTATGCAAGCAATGGGCTCATCCGTCTGCT 240 consensus_2078#1 ------------------------------------------------------------ consensus_2078#0 ACTTGTTATCAAAGTTACAGGCTACACACTCTCTGGTTACAGAACTTTCAGCCGTTGCTG 300 consensus_2078#1 -----------------------------------------CCGCTTTCAGCCGTTGCTG 19 **************** consensus_2078#0 CCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACCGCGGCAGCCCTAC 360 consensus_2078#1 CCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACTGCGGCAGCCCTAC 79 ********************************************** ************* consensus_2078#0 AGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAAT 420 consensus_2078#1 AGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAAT 139 ************************************************************ consensus_2078#0 GCATGTATGTCTAACTAATTAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGT 480 consensus_2078#1 GCATGTATGTCTAACTAAGAAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGT 199 ****************** **************************************** consensus_2078#0 AGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTC 540 consensus_2078#1 AGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTC 259 ************************************************************ consensus_2078#0 TAGTTAAGGGGTTTACCCATTTCTTGTTTTGTACTTACTGCATGCCCCTCTTTGTGTCTG 600 consensus_2078#1 TAGTTA-GGTGTTTTCCCATTTCTTCTTTTGTACTTCCTGCATGCCCCT-TTTCTGTCTC 317 ****** ** **** ********** ********** ************ *** ***** consensus_2078#0 TACAATTTACCTGGAGAGAGAAGGGGCGTGGGGCCGCAAATGGTGGGTGAACGGGCTGGG 660 consensus_2078#1 TACAATTTACATGGA-AGAGAAGTG-CATCAACACG-AAATCATGGATCAATCCA-TGGT 373 ********** **** ******* * * * ** **** *** * ** *** consensus_2078#0 GGCGCGCGCCGGGGGTGGCGCCTTTCTCCTCTCCTCNTCTNTCTCCCCGC-GCCGTTCTT 719 consensus_2078#1 GACGAGC-CTGTCAATGTTTTATTTATAGCGGCCTACAAACTGAGGACGCCAACGTCCTG 432 * ** ** * * ** *** * *** * *** *** ** consensus_2078#0 TC-CCGCCTCTTTCCCGCCCGCCTTCNTCCTTCTCTTCCCCCCCCCCCCCCTNTTGCTCC 778 consensus_2078#1 AAACTGAAAACTTGTTGTAAAGATTAGCTCTTCTCTTCCCCNTCTTACCCAAA------- 485 * * ** * ** ************ * *** consensus_2078#0 CCCNCCNCAATATTTTCTCCTCNTTTTTCCTTCCTTCTCTCTCCCACAC 827 consensus_2078#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||