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Oryza sativa
cluster # 2078 cluster # 2078       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2078#0 length = 827 sequences # 1  
consensus_2078#1 length = 485 sequences # 1  

consensusID : consensus_2078#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 827
fasta sequence
                              [AAAGGCTGCGACAGGAGGTCAAGCTAGGAGTTGTGTTGAAAGAGCAAATGGACTACCTTACTCACTGGGCAGCATTGGAAACAGAACATTCTACTTCTTTATCTAGTGCAATTGAAGCTCTTAGAGCAAGCACACTACGGCTTCCAGTTACAGGAGGAGCAAAGGCTGACGTTTTTACCGTTAAGAATGCTGTCAGTTCAGCAGTTGACATTATGCAAGCAATGGGCTCATCCGTCTGCTACTTGTTATCAAAGTTACAGGCTACACACTCTCTGGTTACAGAACTTTCAGCCGTTGCTGCCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACCGCGGCAGCCCTACAGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAATGCATGTATGTCTAACTAATTAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGTAGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTCTAGTTAAGGGGTTTACCCATTTCTTGTTTTGTACTTACTGCATGCCCCTCTTTGTGTCTGTACAATTTACCTGGAGAGAGAAGGGGCGTGGGGCCGCAAATGGTGGGTGAACGGGCTGGGGGCGCGCGCCGGGGGTGGCGCCTTTCTCCTCTCCTCNTCTNTCTCCCCGCGCCGTTCTTTCCCGCCTCTTTCCCGCCCGCCTTCNTCCTTCTCTTCCCCCCCCCCCCCCTNTTGCTCCCCCNCCNCAATATTTTCTCCTCNTTTTTCCTTCCTTCTCTCTCCCACAC]

[+] EMBL CA757950             [AAAGGCTGCGACAGGAGGTCAAGCTAGGAGTTGTGTTGAAAGAGCAAATGGACTACCTTACTCACTGGGCAGCATTGGAAACAGAACATTCTACTTCTTTATCTAGTGCAATTGAAGCTCTTAGAGCAAGCACACTACGGCTTCCAGTTACAGGAGGAGCAAAGGCTGACGTTTTTACCGTTAAGAATGCTGTCAGTTCAGCAGTTGACATTATGCAAGCAATGGGCTCATCCGTCTGCTACTTGTTATCAAAGTTACAGGCTACACACTCTCTGGTTACAGAACTTTCAGCCGTTGCTGCCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACCGCGGCAGCCCTACAGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAATGCATGTATGTCTAACTAATTAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGTAGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTCTAGTTAAGGGGTTTACCCATTTCTTGTTTTGTACTTACTGCATGCCCCTCTTTGTGTCTGTACAATTTACCTGGAGAGAGAAGGGGCGTGGGGCCGCAAATGGTGGGTGAACGGGCTGGGGGCGCGCGCCGGGGGTGGCGCCTTTCTCCTCTCCTCNTCTNTCTCCCCGCGCCGTTCTTTCCCGCCTCTTTCCCGCCCGCCTTCNTCCTTCTCTTCCCCCCCCCCCCCCTNTTGCTCCCCCNCCNCAATATTTTCTCCTCNTTTTTCCTTCCTTCTCTCTCCCACAC]


>consensus_2078#0 AAAGGCTGCGACAGGAGGTCAAGCTAGGAGTTGTGTTGAAAGAGCAAATGGACTACCTTA CTCACTGGGCAGCATTGGAAACAGAACATTCTACTTCTTTATCTAGTGCAATTGAAGCTC TTAGAGCAAGCACACTACGGCTTCCAGTTACAGGAGGAGCAAAGGCTGACGTTTTTACCG TTAAGAATGCTGTCAGTTCAGCAGTTGACATTATGCAAGCAATGGGCTCATCCGTCTGCT ACTTGTTATCAAAGTTACAGGCTACACACTCTCTGGTTACAGAACTTTCAGCCGTTGCTG CCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACCGCGGCAGCCCTAC AGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAAT GCATGTATGTCTAACTAATTAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGT AGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTC TAGTTAAGGGGTTTACCCATTTCTTGTTTTGTACTTACTGCATGCCCCTCTTTGTGTCTG TACAATTTACCTGGAGAGAGAAGGGGCGTGGGGCCGCAAATGGTGGGTGAACGGGCTGGG GGCGCGCGCCGGGGGTGGCGCCTTTCTCCTCTCCTCNTCTNTCTCCCCGCGCCGTTCTTT CCCGCCTCTTTCCCGCCCGCCTTCNTCCTTCTCTTCCCCCCCCCCCCCCTNTTGCTCCCC CNCCNCAATATTTTCTCCTCNTTTTTCCTTCCTTCTCTCTCCCACAC



consensusID : consensus_2078#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence
                              [CCGCTTTCAGCCGTTGCTGCCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACTGCGGCAGCCCTACAGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAATGCATGTATGTCTAACTAAGAAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGTAGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTCTAGTTAGGTGTTTTCCCATTTCTTCTTTTGTACTTCCTGCATGCCCCTTTTCTGTCTCTACAATTTACATGGAAGAGAAGTGCATCAACACGAAATCATGGATCAATCCATGGTGACGAGCCTGTCAATGTTTTATTTATAGCGGCCTACAAACTGAGGACGCCAACGTCCTGAAACTGAAAACTTGTTGTAAAGATTAGCTCTTCTCTTCCCCNTCTTACCCAAA]

[+] EMBL BQ908861             [CCGCTTTCAGCCGTTGCTGCCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACTGCGGCAGCCCTACAGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAATGCATGTATGTCTAACTAAGAAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGTAGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTCTAGTTAGGTGTTTTCCCATTTCTTCTTTTGTACTTCCTGCATGCCCCTTTTCTGTCTCTACAATTTACATGGAAGAGAAGTGCATCAACACGAAATCATGGATCAATCCATGGTGACGAGCCTGTCAATGTTTTATTTATAGCGGCCTACAAACTGAGGACGCCAACGTCCTGAAACTGAAAACTTGTTGTAAAGATTAGCTCTTCTCTTCCCCNTCTTACCCAAA]


>consensus_2078#1 CCGCTTTCAGCCGTTGCTGCCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTA GGTACTGCGGCAGCCCTACAGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAA ACTGAGTGAACAGCTTAATGCATGTATGTCTAACTAAGAAGAATAGAATGTAGAGGTAAC ACCATTCATTAGTTTCAGTAGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTA TTCCTTTTTTTCCCTTTTCTAGTTAGGTGTTTTCCCATTTCTTCTTTTGTACTTCCTGCA TGCCCCTTTTCTGTCTCTACAATTTACATGGAAGAGAAGTGCATCAACACGAAATCATGG ATCAATCCATGGTGACGAGCCTGTCAATGTTTTATTTATAGCGGCCTACAAACTGAGGAC GCCAACGTCCTGAAACTGAAAACTTGTTGTAAAGATTAGCTCTTCTCTTCCCCNTCTTAC CCAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2078#0      AAAGGCTGCGACAGGAGGTCAAGCTAGGAGTTGTGTTGAAAGAGCAAATGGACTACCTTA 60
consensus_2078#1      ------------------------------------------------------------
                                                                                  

consensus_2078#0      CTCACTGGGCAGCATTGGAAACAGAACATTCTACTTCTTTATCTAGTGCAATTGAAGCTC 120
consensus_2078#1      ------------------------------------------------------------
                                                                                  

consensus_2078#0      TTAGAGCAAGCACACTACGGCTTCCAGTTACAGGAGGAGCAAAGGCTGACGTTTTTACCG 180
consensus_2078#1      ------------------------------------------------------------
                                                                                  

consensus_2078#0      TTAAGAATGCTGTCAGTTCAGCAGTTGACATTATGCAAGCAATGGGCTCATCCGTCTGCT 240
consensus_2078#1      ------------------------------------------------------------
                                                                                  

consensus_2078#0      ACTTGTTATCAAAGTTACAGGCTACACACTCTCTGGTTACAGAACTTTCAGCCGTTGCTG 300
consensus_2078#1      -----------------------------------------CCGCTTTCAGCCGTTGCTG 19
                                                                  ****************

consensus_2078#0      CCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACCGCGGCAGCCCTAC 360
consensus_2078#1      CCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACTGCGGCAGCCCTAC 79
                      ********************************************** *************

consensus_2078#0      AGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAAT 420
consensus_2078#1      AGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAAT 139
                      ************************************************************

consensus_2078#0      GCATGTATGTCTAACTAATTAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGT 480
consensus_2078#1      GCATGTATGTCTAACTAAGAAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGT 199
                      ******************  ****************************************

consensus_2078#0      AGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTC 540
consensus_2078#1      AGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTC 259
                      ************************************************************

consensus_2078#0      TAGTTAAGGGGTTTACCCATTTCTTGTTTTGTACTTACTGCATGCCCCTCTTTGTGTCTG 600
consensus_2078#1      TAGTTA-GGTGTTTTCCCATTTCTTCTTTTGTACTTCCTGCATGCCCCT-TTTCTGTCTC 317
                      ****** ** **** ********** ********** ************ *** ***** 

consensus_2078#0      TACAATTTACCTGGAGAGAGAAGGGGCGTGGGGCCGCAAATGGTGGGTGAACGGGCTGGG 660
consensus_2078#1      TACAATTTACATGGA-AGAGAAGTG-CATCAACACG-AAATCATGGATCAATCCA-TGGT 373
                      ********** **** ******* * * *     ** ****  *** * **     *** 

consensus_2078#0      GGCGCGCGCCGGGGGTGGCGCCTTTCTCCTCTCCTCNTCTNTCTCCCCGC-GCCGTTCTT 719
consensus_2078#1      GACGAGC-CTGTCAATGTTTTATTTATAGCGGCCTACAAACTGAGGACGCCAACGTCCTG 432
                      * ** ** * *    **     *** *     ***      *     ***   *** ** 

consensus_2078#0      TC-CCGCCTCTTTCCCGCCCGCCTTCNTCCTTCTCTTCCCCCCCCCCCCCCTNTTGCTCC 778
consensus_2078#1      AAACTGAAAACTTGTTGTAAAGATTAGCTCTTCTCTTCCCCNTCTTACCCAAA------- 485
                         * *     **   *      **    ************  *   ***          

consensus_2078#0      CCCNCCNCAATATTTTCTCCTCNTTTTTCCTTCCTTCTCTCTCCCACAC 827
consensus_2078#1      -------------------------------------------------
                                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)