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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1657 fasta sequence
[TCGCACAGTCGCAGCTGCTGCGGCTGTTTGCCCATCAATCAAGAAATGGCGAACAAGGCTGTCACCATTGGCGATCTGATCCACCGCGTCGCCACCTCCTGCCTCTCCAACCGCCTCCCCGGCAGCTACGCGGTCAGCGACTCCGGCGACACCGACTTCGACGACGACGACGACGACGACCCCTTCGCTGACGCCATCTCGGGGGCCGGTGGCGAGCGGCGGCGCACTCCCTCTTCTTCCGAGGAGGCGGAGGCGGAGGCGGAGGCTGATGATGAGGGGGAGGATGGTGGTGAGGGTGGGGAGGAGGAGGATGAGGAGAATCTGAAGATCTGGGAGGAGAAGAGGAAGGTGAAGGCGGCGGCGGCGGTGGCGGCGAGTGGGGCTGAGCGGGCGAGGGAGGCGGAGACGCTCATGGCGGAGGTGTTCGACGCGGTCTCCGGCGTGCGCCGCGCGTACTCTGACCTCCAGGGGGCACACTGCCCCTGGGACCCCGACAAGATGCGGAGCGCCGACGCCGCCGTCGTCGCCAAGCTCCGCCACCTCGCGCGGCTCCGCGACCGCTTCCGCCGCTCCGTCGCCACGGGGGGGCACATCCCCGGCCCCATCCCCACCGCGCCGCCGCTCCGCGAGGCCGTCGCGCCGTACGAGGCCGCGCTCGACGACCTCCGCCGCCAGCTCCAAGCCAAGCAGGCCGAGGTCGATGGCCTCAAGGAGAAGCTCGCCGTCGCGAGCAACCGCCGCAACTCACGCCACCACCCCTCCAAGCACAATGCCTCCGGCGGCGGCGGCGGCGCCCCGACCGCGGAGCTGTTCGCCGCCTGCGCCGAGCAGGCCCGCGCCGCGATCCGGGCGTTCGCGGGGCACCTCCTCCAGCTGATGCGCGCGGCGGGGCTTGACCTCGCGGCGGCGACCCGGTCCCTCACCAAGATCCCGGTGTCCTCGCCGCAGCTGGCCAAGCACGCGCTCGAGGCGCACGTCACCCGCGTCCTCCTCGTCGGCTTCGAGCACGAATCCTTCTACCTCGACGGCTCCCTCTCCTCGCTGCTCGACCCCGCCGCGTTCCGGCGGGAGCGGTACACGCAGTTCCGCGACATGCGGGGCATGGAGCCCGCCGAGCTCCTGGGCCTCCTCCCGACCTGCCCCTTCGGCCGCTACGCCGCGAGCAAGTTCGCGGCGCTCCTCCCGCCGCGCGTGGAGCAGGCCGTCCTCGGCGACGGCGAGCACCGAAGGGCGGTGGAGGGCGGCGCGCACCCGCGGACGCCATTCTACGGGGAGTTCCTGCGCGCCGCGAAGGCGGTGTGGATGCTGCACCTGCTGGCGTTCGCGCTCGAGACGCCGCCCAGCCACTTCGAGGCCGGCCGCGGCGCCGAGTTCCACCCGGATTACATGGAGAGCGTCGCCGGCGGGCGCGGCGGCGGCGCCGCCGGCATGGTCGTCGGGTTCGCCGTGGCGCCCGGCTTCCGGCTGGGCAATGGCGCCGTGGTGCGAGCCCGGGTCTACCTCGTGCCGCGCGGTGGCCGACCGTGACAGGATACGCAATGCACGGATCGCCTCTTCCTTAGCTGGAGTAGTTGATTGGTGGAAGCAAGTGTTGTAGTAGTAGCTGCTTAATTACATGTGTAATAGACTTGGATTACTCCAGAAATGAAGGATGAAC]
[+] EMBL AK121566 [TCGCACAGTCGCAGCTGCTGCGGCTGTTTGCCCATCAATCAAGAAATGGCGAACAAGGCTGTCACCATTGGCGATCTGATCCACCGCGTCGCCACCTCCTGCCTCTCCAACCGCCTCCCCGGCAGCTACGCGGTCAGCGACTCCGGCGACACCGACTTCGACGACGACGACGACGACGACCCCTTCGCTGACGCCATCTCGGGGGCCGGTGGCGAGCGGCGGCGCACTCCCTCTTCTTCCGAGGAGGCGGAGGCGGAGGCGGAGGCTGATGATGAGGGGGAGGATGGTGGTGAGGGTGGGGAGGAGGAGGATGAGGAGAATCTGAAGATCTGGGAGGAGAAGAGGAAGGTGAAGGCGGCGGCGGCGGTGGCGGCGAGTGGGGCTGAGCGGGCGAGGGAGGCGGAGACGCTCATGGCGGAGGTGTTCGACGCGGTCTCCGGCGTGCGCCGCGCGTACTCTGACCTCCAGGGGGCACACTGCCCCTGGGACCCCGACAAGATGCGGAGCGCCGACGCCGCCGTCGTCGCCAAGCTCCGCCACCTCGCGCGGCTCCGCGACCGCTTCCGCCGCTCCGTCGCCACGGGGGGGCACATCCCCGGCCCCATCCCCACCGCGCCGCCGCTCCGCGAGGCCGTCGCGCCGTACGAGGCCGCGCTCGACGACCTCCGCCGCCAGCTCCAAGCCAAGCAGGCCGAGGTCGATGGCCTCAAGGAGAAGCTCGCCGTCGCGAGCAACCGCCGCAACTCACGCCACCACCCCTCCAAGCACAATGCCTCCGGCGGCGGCGGCGGCGCCCCGACCGCGGAGCTGTTCGCCGCCTGCGCCGAGCAGGCCCGCGCCGCGATCCGGGCGTTCGCGGGGCACCTCCTCCAGCTGATGCGCGCGGCGGGGCTTGACCTCGCGGCGGCGACCCGGTCCCTCACCAAGATCCCGGTGTCCTCGCCGCAGCTGGCCAAGCACGCGCTCGAGGCGCACGTCACCCGCGTCCTCCTCGTCGGCTTCGAGCACGAATCCTTCTACCTCGACGGCTCCCTCTCCTCGCTGCTCGACCCCGCCGCGTTCCGGCGGGAGCGGTACACGCAGTTCCGCGACATGCGGGGCATGGAGCCCGCCGAGCTCCTGGGCCTCCTCCCGACCTGCCCCTTCGGCCGCTACGCCGCGAGCAAGTTCGCGGCGCTCCTCCCGCCGCGCGTGGAGCAGGCCGTCCTCGGCGACGGCGAGCACCGAAGGGCGGTGGAGGGCGGCGCGCACCCGCGGACGCCATTCTACGGGGAGTTCCTGCGCGCCGCGAAGGCGGTGTGGATGCTGCACCTGCTGGCGTTCGCGCTCGAGACGCCGCCCAGCCACTTCGAGGCCGGCCGCGGCGCCGAGTTCCACCCGGATTACATGGAGAGCGTCGCCGGCGGGCGCGGCGGCGGCGCCGCCGGCATGGTCGTCGGGTTCGCCGTGGCGCCCGGCTTCCGGCTGGGCAATGGCGCCGTGGTGCGAGCCCGGGTCTACCTCGTGCCGCGCGGTGGCCGACCGTGACAGGATACGCAATGCACGGATCGCCTCTTCCTTAGCTGGAGTAGTTGATTGGTGGAAGCAAGTGTTGTAGTAGTAGCTGCTTAATTACATGTGTAATAGACTTGGATTACTCCAGAAATGAAGGATGAAC]
consensusID : consensus_211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1427 fasta sequence
[AGTCGCAGCTGCTGCGGCTGTTTGCCCATCAATCAAGAAATGGCGAACAAGGCTGTCACCATTGGCGATCTGATCCACCGCGTCGCCACCTCCTGCCTCTCCAACCGCCTCCCCGGCAGCTACGCGGTCAGCGACTCCGCCGTACGAGGCCGCGCTCGACGACCTCCGCCGCCAGCTCCAAGCCAAGCAGGCCGAGGTCGATGGCCTCAAGGAGAAGCTCGCCGTCGCGAGCAACCGCCGCAACTCACGCCACCACCCCTCCAAGCACAATGCCTCCGGCGGCGGCGGCGGCGCCCCGACCGCGGAGCTGTTCGCCGCCTGCGCCGAGCAGGCCCGCGCCGCGATCCGGGCGTTCGCGGGGCACCTCCTCCAGCTGATGCGCGCGGCGGGGCTTGACCTCGCGGCGGCGACCCGGTCCCTCACCAAGATCCCGGTGTCCTCGCCGCAGCTGGCCAAGCACGCGCTCGAGGCGCACGTCACCCGCGTCCTCCTCGTCGGCTTCGAGCACGAATCCTTCTACCTCGACGGCTCCCTCTCCTCGCTGCTCGACCCCGCCGCGTTCCGGCGGGAGCGGTACACGCAGTTCCGCGACATGCGGGGCATGGAGCCCGCCGAGCTCCTGGGCCTCCTCCCGACCTGCCCCTTCGGCCGCTACGCCGCGAGCAAGTTCGCGGCGCTCCTCCCGCCGCGCGTGGAGCAGGCCGTCCTCGGCGACGGCGAGCACCGGAGGGCGGTGGAGGGCGGCGCGCACCCGCGGACGCCATTCTACGGGGAGTTCCTGCGCGCCGCGAAGGCGGTGTGGATGCTGCACCTGCTGGCGTTCGCGCTCGAGACGCCGCCCAGCCACTTCGAGGCCGGCCGCGGCGCCGAGTTCCACCCGGATTACATGGAGAGCGTCGCCGGCGGGCGCGGCGGCGGCGCCGCCGGCATGGTCGTCGGGTTCGCCGTGGCGCCCGGCTTCCGGCTGGGCAATGGCGCCGTGGTGCGAGCCCGGGTCTACCTCGTGCCGCGCGGTGGCCGACCGTGACAGGATACGCAATGCACGGATCGCCTCTTCCTTAGCTGGAGTAGTTGATTGGTGGAAGCAAGTGTTGTAGTAGTAGCTGCTTAATTACATGTGTAATAGACTTGGATTACTCCAGAAATGAAGGATGAACCATTTAGTCTACTTACTGTTCTATTTAGCATTTTAGCAACCTCTTATCTGAAGTAATCCATGGGTAAGAGAATTGGGTGTATGATCATGTTGTACTATTACTATTATTTAGTCAAAGTAGGGGTTGGTACTGGAGTATTAGCTGGGTCATGTGTACTATCAGTATGATCATCGCAAGATGTGGGCTTGAGTATGATGGATAATTAAGAAGGCACTCTATCATTCAGAAGATGTGGTAGTAGTTGTCACATGACATCAAAGAAGTACTATC]
[+] EMBL AK063312 [AGTCGCAGCTGCTGCGGCTGTTTGCCCATCAATCAAGAAATGGCGAACAAGGCTGTCACCATTGGCGATCTGATCCACCGCGTCGCCACCTCCTGCCTCTCCAACCGCCTCCCCGGCAGCTACGCGGTCAGCGACTCCGCCGTACGAGGCCGCGCTCGACGACCTCCGCCGCCAGCTCCAAGCCAAGCAGGCCGAGGTCGATGGCCTCAAGGAGAAGCTCGCCGTCGCGAGCAACCGCCGCAACTCACGCCACCACCCCTCCAAGCACAATGCCTCCGGCGGCGGCGGCGGCGCCCCGACCGCGGAGCTGTTCGCCGCCTGCGCCGAGCAGGCCCGCGCCGCGATCCGGGCGTTCGCGGGGCACCTCCTCCAGCTGATGCGCGCGGCGGGGCTTGACCTCGCGGCGGCGACCCGGTCCCTCACCAAGATCCCGGTGTCCTCGCCGCAGCTGGCCAAGCACGCGCTCGAGGCGCACGTCACCCGCGTCCTCCTCGTCGGCTTCGAGCACGAATCCTTCTACCTCGACGGCTCCCTCTCCTCGCTGCTCGACCCCGCCGCGTTCCGGCGGGAGCGGTACACGCAGTTCCGCGACATGCGGGGCATGGAGCCCGCCGAGCTCCTGGGCCTCCTCCCGACCTGCCCCTTCGGCCGCTACGCCGCGAGCAAGTTCGCGGCGCTCCTCCCGCCGCGCGTGGAGCAGGCCGTCCTCGGCGACGGCGAGCACCGGAGGGCGGTGGAGGGCGGCGCGCACCCGCGGACGCCATTCTACGGGGAGTTCCTGCGCGCCGCGAAGGCGGTGTGGATGCTGCACCTGCTGGCGTTCGCGCTCGAGACGCCGCCCAGCCACTTCGAGGCCGGCCGCGGCGCCGAGTTCCACCCGGATTACATGGAGAGCGTCGCCGGCGGGCGCGGCGGCGGCGCCGCCGGCATGGTCGTCGGGTTCGCCGTGGCGCCCGGCTTCCGGCTGGGCAATGGCGCCGTGGTGCGAGCCCGGGTCTACCTCGTGCCGCGCGGTGGCCGACCGTGACAGGATACGCAATGCACGGATCGCCTCTTCCTTAGCTGGAGTAGTTGATTGGTGGAAGCAAGTGTTGTAGTAGTAGCTGCTTAATTACATGTGTAATAGACTTGGATTACTCCAGAAATGAAGGATGAACCATTTAGTCTACTTACTGTTCTATTTAGCATTTTAGCAACCTCTTATCTGAAGTAATCCATGGGTAAGAGAATTGGGTGTATGATCATGTTGTACTATTACTATTATTTAGTCAAAGTAGGGGTTGGTACTGGAGTATTAGCTGGGTCATGTGTACTATCAGTATGATCATCGCAAGATGTGGGCTTGAGTATGATGGATAATTAAGAAGGCACTCTATCATTCAGAAGATGTGGTAGTAGTTGTCACATGACATCAAAGAAGTACTATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_211#0 TCGCACAGTCGCAGCTGCTGCGGCTGTTTGCCCATCAATCAAGAAATGGCGAACAAGGCT 60
consensus_211#1 ------------------------------------------------------------
consensus_211#0 GTCACCATTGGCGATCTGATCCACCGCGTCGCCACCTCCTGCCTCTCCAACCGCCTCCCC 120
consensus_211#1 ------------------------------------------------------------
consensus_211#0 GGCAGCTACGCGGTCAGCGACTCCGGCGACACCGACTTCGACGACGACGACGACGACGAC 180
consensus_211#1 ------------------------------------------------------------
consensus_211#0 CCCTTCGCTGACGCCATCTCGGGGGCCGGTGGCGAGCGGCGGCGCACTCCCTCTTCTTCC 240
consensus_211#1 ------------------------------------------------------------
consensus_211#0 GAGGAGGCGGAGGCGGAGGCGGAGGCTGATGATGAGGGGGAGGATGGTGGTGAGGGTGGG 300
consensus_211#1 ------------------------------------------------------------
consensus_211#0 GAGGAGGAGGATGAGGAGAATCTGAAGATCTGGGAGGAGAAGAGGAAGGTGAAGGCGGCG 360
consensus_211#1 ------------------------------------------------------------
consensus_211#0 GCGGCGGTGGCGGCGAGTGGGGCTGAGCGGGCGAGGGAGGCGGAGACGCTCATGGCGGAG 420
consensus_211#1 ------------------------------------------------------------
consensus_211#0 GTGTTCGACGCGGTCTCCGGCGTGCGCCGCGCGTACTCTGACCTCCAGGGGGCACACTGC 480
consensus_211#1 ------------------------------------------------------------
consensus_211#0 CCCTGGGACCCCGACAAGATGCGGAGCGCCGACGCCGCCGTCGTC-GCCAAGCT-CCGCC 538
consensus_211#1 -----------------------AGTCGCAGCTGCTGCGGCTGTTTGCCCATCAATCAAG 37
*** * ** ** * ** *** * * *
consensus_211#0 ACCTCGCGCGGCTCCGCGACCGCTTCCGCCGCTCCGTCGCCACGGGGGGGCACATCCCCG 598
consensus_211#1 AAATGGCG-AACAAGGCTGTCACCATTGGCGATCTGATCCACCGCGTCGCCACCTCCTGC 96
* * *** * ** * * * ** ** * * ** * * *** ***
consensus_211#0 GCCCCATCCCCACCGCGCCGCCGCTCCGCGA--GGCCGTCGCGCCGTACGAGGCCGCGCT 656
consensus_211#1 CTCTCCAACCGCCTCCCCGGCAGCTACGCGGTCAGCGACTCCGCCGTACGAGGCCGCGCT 156
* * ** * * * ** *** **** ** *******************
consensus_211#0 CGACGACCTCCGCCGCCAGCTCCAAGCCAAGCAGGCCGAGGTCGATGGCCTCAAGGAGAA 716
consensus_211#1 CGACGACCTCCGCCGCCAGCTCCAAGCCAAGCAGGCCGAGGTCGATGGCCTCAAGGAGAA 216
************************************************************
consensus_211#0 GCTCGCCGTCGCGAGCAACCGCCGCAACTCACGCCACCACCCCTCCAAGCACAATGCCTC 776
consensus_211#1 GCTCGCCGTCGCGAGCAACCGCCGCAACTCACGCCACCACCCCTCCAAGCACAATGCCTC 276
************************************************************
consensus_211#0 CGGCGGCGGCGGCGGCGCCCCGACCGCGGAGCTGTTCGCCGCCTGCGCCGAGCAGGCCCG 836
consensus_211#1 CGGCGGCGGCGGCGGCGCCCCGACCGCGGAGCTGTTCGCCGCCTGCGCCGAGCAGGCCCG 336
************************************************************
consensus_211#0 CGCCGCGATCCGGGCGTTCGCGGGGCACCTCCTCCAGCTGATGCGCGCGGCGGGGCTTGA 896
consensus_211#1 CGCCGCGATCCGGGCGTTCGCGGGGCACCTCCTCCAGCTGATGCGCGCGGCGGGGCTTGA 396
************************************************************
consensus_211#0 CCTCGCGGCGGCGACCCGGTCCCTCACCAAGATCCCGGTGTCCTCGCCGCAGCTGGCCAA 956
consensus_211#1 CCTCGCGGCGGCGACCCGGTCCCTCACCAAGATCCCGGTGTCCTCGCCGCAGCTGGCCAA 456
************************************************************
consensus_211#0 GCACGCGCTCGAGGCGCACGTCACCCGCGTCCTCCTCGTCGGCTTCGAGCACGAATCCTT 1016
consensus_211#1 GCACGCGCTCGAGGCGCACGTCACCCGCGTCCTCCTCGTCGGCTTCGAGCACGAATCCTT 516
************************************************************
consensus_211#0 CTACCTCGACGGCTCCCTCTCCTCGCTGCTCGACCCCGCCGCGTTCCGGCGGGAGCGGTA 1076
consensus_211#1 CTACCTCGACGGCTCCCTCTCCTCGCTGCTCGACCCCGCCGCGTTCCGGCGGGAGCGGTA 576
************************************************************
consensus_211#0 CACGCAGTTCCGCGACATGCGGGGCATGGAGCCCGCCGAGCTCCTGGGCCTCCTCCCGAC 1136
consensus_211#1 CACGCAGTTCCGCGACATGCGGGGCATGGAGCCCGCCGAGCTCCTGGGCCTCCTCCCGAC 636
************************************************************
consensus_211#0 CTGCCCCTTCGGCCGCTACGCCGCGAGCAAGTTCGCGGCGCTCCTCCCGCCGCGCGTGGA 1196
consensus_211#1 CTGCCCCTTCGGCCGCTACGCCGCGAGCAAGTTCGCGGCGCTCCTCCCGCCGCGCGTGGA 696
************************************************************
consensus_211#0 GCAGGCCGTCCTCGGCGACGGCGAGCACCGAAGGGCGGTGGAGGGCGGCGCGCACCCGCG 1256
consensus_211#1 GCAGGCCGTCCTCGGCGACGGCGAGCACCGGAGGGCGGTGGAGGGCGGCGCGCACCCGCG 756
****************************** *****************************
consensus_211#0 GACGCCATTCTACGGGGAGTTCCTGCGCGCCGCGAAGGCGGTGTGGATGCTGCACCTGCT 1316
consensus_211#1 GACGCCATTCTACGGGGAGTTCCTGCGCGCCGCGAAGGCGGTGTGGATGCTGCACCTGCT 816
************************************************************
consensus_211#0 GGCGTTCGCGCTCGAGACGCCGCCCAGCCACTTCGAGGCCGGCCGCGGCGCCGAGTTCCA 1376
consensus_211#1 GGCGTTCGCGCTCGAGACGCCGCCCAGCCACTTCGAGGCCGGCCGCGGCGCCGAGTTCCA 876
************************************************************
consensus_211#0 CCCGGATTACATGGAGAGCGTCGCCGGCGGGCGCGGCGGCGGCGCCGCCGGCATGGTCGT 1436
consensus_211#1 CCCGGATTACATGGAGAGCGTCGCCGGCGGGCGCGGCGGCGGCGCCGCCGGCATGGTCGT 936
************************************************************
consensus_211#0 CGGGTTCGCCGTGGCGCCCGGCTTCCGGCTGGGCAATGGCGCCGTGGTGCGAGCCCGGGT 1496
consensus_211#1 CGGGTTCGCCGTGGCGCCCGGCTTCCGGCTGGGCAATGGCGCCGTGGTGCGAGCCCGGGT 996
************************************************************
consensus_211#0 CTACCTCGTGCCGCGCGGTGGCCGACCGTGACAGGATACGCAATGCACGGATCGCCTCTT 1556
consensus_211#1 CTACCTCGTGCCGCGCGGTGGCCGACCGTGACAGGATACGCAATGCACGGATCGCCTCTT 1056
************************************************************
consensus_211#0 CCTTAGCTGGAGTAGTTGATTGGTGGAAGCAAGTGTTGTAGTAGTAGCTGCTTAATTACA 1616
consensus_211#1 CCTTAGCTGGAGTAGTTGATTGGTGGAAGCAAGTGTTGTAGTAGTAGCTGCTTAATTACA 1116
************************************************************
consensus_211#0 TGTGTAATAGACTTGGATTACTCCAGAAATGAAGGATGAAC------------------- 1657
consensus_211#1 TGTGTAATAGACTTGGATTACTCCAGAAATGAAGGATGAACCATTTAGTCTACTTACTGT 1176
*****************************************
consensus_211#0 ------------------------------------------------------------
consensus_211#1 TCTATTTAGCATTTTAGCAACCTCTTATCTGAAGTAATCCATGGGTAAGAGAATTGGGTG 1236
consensus_211#0 ------------------------------------------------------------
consensus_211#1 TATGATCATGTTGTACTATTACTATTATTTAGTCAAAGTAGGGGTTGGTACTGGAGTATT 1296
consensus_211#0 ------------------------------------------------------------
consensus_211#1 AGCTGGGTCATGTGTACTATCAGTATGATCATCGCAAGATGTGGGCTTGAGTATGATGGA 1356
consensus_211#0 ------------------------------------------------------------
consensus_211#1 TAATTAAGAAGGCACTCTATCATTCAGAAGATGTGGTAGTAGTTGTCACATGACATCAAA 1416
consensus_211#0 -----------
consensus_211#1 GAAGTACTATC 1427
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||