These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1551 fasta sequence [CGAGCTCCCGTCCATTCCCTCGTCTCTCTGGATAGGGGATCTGGAAAATTTGCTGCTCTCTTGATCGAGCGGTGAAACTTTCTCACCATTCATCCATCCGGCGAAACTTCCACTGATGAATCGGACTTCCCAAACCTTTCCACGCTCTCGCTCCAAATGACCAAAAGCCAGAGGAGGAGGGTTTCGCAGCAACAACGTGGGCGCCCACGGCCCGCGCCCGGTCAGCGAGGAAACAGATCGAAAAAAAACAAAAGCCGCTGACGTCACGATCTCGAGGCTCGCGATTCCCAACAATCTCTTTAAAAAGCTTCCTCTCGCCGAATCCCCCTCCACCTCCACCACCCGCCGCCGCCGCCGCCGCCGCCGCCATGGCCTCCGACCTGCGCCCGCCGGAGCACCAGGTGGCGGGGCACCGCGCGTCCGCCGACAAGCTGGGCCCGCTCGTCGACGGCGAGGGGCTCTTCTACAAGCCCCTCCAGACCGGGGAGCGCGGGGAGCACGAGGCCGCCTTCTACGCCGCGTTCACCGCGCACCCGGCCGTCCCGCCCCGGGTCCGGGGCGCCTTCTTCCCGCGCTTCCACGGCACCCGCTTCCTCCCGGCCCCAGCCAGCCCCGGCGGCGCGCCCTACCCGCACATCGTCCTCGACGACCTCCTCGCGGGCCTCCCGTCCCCCTGCGTCGCCGACGTCAAGATCGGCGCCTGCACGTGGCCGCCGCGATCCCCGGACCCCTACGTCGCCAAGTGCCTCGCCAAGGACCGCGAGACCACCAGCGCGCTCCTCGGCTTCCGCGTCTCCGGCGTCCGGGTGGTCGATGCCCGGGGCGGCGCCGTGTGGCGCCCGGACCGGTCGGAGCTGAAGGGGATCGACGCCGCCGGGGTCCGCCGCGTGCTCCGCCGCTACGTGTCCACGGGCGGCGGCGACGGCCTGGACTGCGCGCTCGCCGCCGCGGTGTACGGAGGGGAGGGCGGCGTCCTGGCTCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAACCCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAAATTTTGTCAGCTTGGAGATCAGATGATTAAACGGTCCAACATTGTGTTCTTGCAAATGTCACACATAATAAAGTGCCATCAAATGGAGAAAGAGTCAATTGTTTGAAAGAGGAAACTTCACCGAGCTGCCGGTAACGTAAATGCGAAGCGACTCACCGGCAGCTCTCCCGGCAAACTTACGGCAACTGATACCTTTTTTTGCATACCCCCCTTTAAAACCATGGGATTCGGGGTGCATTGGATCTTACTCTTTAGTTGTATTAAAGAAATGGTGAACAAAAGATGGGCGTTGT] [+] EMBL AK072296 [CGAGCTCCCGTCCATTCCCTCGTCTCTCTGGATAGGGGATCTGGAAAATTTGCTGCTCTCTTGATCGAGCGGTGAAACTTTCTCACCATTCATCCATCCGGCGAAACTTCCACTGATGAATCGGACTTCCCAAACCTTTCCACGCTCTCGCTCCAAATGACCAAAAGCCAGAGGAGGAGGGTTTCGCAGCAACAACGTGGGCGCCCACGGCCCGCGCCCGGTCAGCGAGGAAACAGATCGAAAAAAAACAAAAGCCGCTGACGTCACGATCTCGAGGCTCGCGATTCCCAACAATCTCTTTAAAAAGCTTCCTCTCGCCGAATCCCCCTCCACCTCCACCACCCGCCGCCGCCGCCGCCGCCGCCGCCATGGCCTCCGACCTGCGCCCGCCGGAGCACCAGGTGGCGGGGCACCGCGCGTCCGCCGACAAGCTGGGCCCGCTCGTCGACGGCGAGGGGCTCTTCTACAAGCCCCTCCAGACCGGGGAGCGCGGGGAGCACGAGGCCGCCTTCTACGCCGCGTTCACCGCGCACCCGGCCGTCCCGCCCCGGGTCCGGGGCGCCTTCTTCCCGCGCTTCCACGGCACCCGCTTCCTCCCGGCCCCAGCCAGCCCCGGCGGCGCGCCCTACCCGCACATCGTCCTCGACGACCTCCTCGCGGGCCTCCCGTCCCCCTGCGTCGCCGACGTCAAGATCGGCGCCTGCACGTGGCCGCCGCGATCCCCGGACCCCTACGTCGCCAAGTGCCTCGCCAAGGACCGCGAGACCACCAGCGCGCTCCTCGGCTTCCGCGTCTCCGGCGTCCGGGTGGTCGATGCCCGGGGCGGCGCCGTGTGGCGCCCGGACCGGTCGGAGCTGAAGGGGATCGACGCCGCCGGGGTCCGCCGCGTGCTCCGCCGCTACGTGTCCACGGGCGGCGGCGACGGCCTGGACTGCGCGCTCGCCGCCGCGGTGTACGGAGGGGAGGGCGGCGTCCTGGCTCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAACCCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAAATTTTGTCAGCTTGGAGATCAGATGATTAAACGGTCCAACATTGTGTTCTTGCAAATGTCACACATAATAAAGTGCCATCAAATGGAGAAAGAGTCAATTGTTTGAAAGAGGAAACTTCACCGAGCTGCCGGTAACGTAAATGCGAAGCGACTCACCGGCAGCTCTCCCGGCAAACTTACGGCAACTGATACCTTTTTTTGCATACCCCCCTTTAAAACCATGGGATTCGGGGTGCATTGGATCTTACTCTTTAGTTGTATTAAAGAAATGGTGAACAAAAGATGGGCGTTGT] consensusID : consensus_2131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [TCCACGGCCGCGCGACGGCNTGGATCTGCGCGTTTCGCCGCCGCGGTGTACGGAGGGGAGGCGGCNTCCTGGCGCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAACCCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAAATTTTGTCAGCTTGGAGATCAGATGATTAACACGGTAAAGCAATGCCCCTCTATGTTTATTGTTCTTTTTGTTTTGTTAGATTTGGATGACAATGTTAGACATTGAGTCAGTAAACAAAGGAGGATGTAAAGCAAACGGCAAATCTCTTGTGTCTTGGATTATGTTCTATACTGNTGGAAGAAGATTAAAGTATAAACAGAAAAAA] [+] EMBL BQ907118 [TCCACGGCCGCGCGACGGCNTGGATCTGCGCGTTTCGCCGCCGCGGTGTACGGAGGGGAGGCGGCNTCCTGGCGCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAACCCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAAATTTTGTCAGCTTGGAGATCAGATGATTAACACGGTAAAGCAATGCCCCTCTATGTTTATTGTTCTTTTTGTTTTGTTAGATTTGGATGACAATGTTAGACATTGAGTCAGTAAACAAAGGAGGATGTAAAGCAAACGGCAAATCTCTTGTGTCTTGGATTATGTTCTATACTGNTGGAAGAAGATTAAAGTATAAACAGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2131#0 CGAGCTCCCGTCCATTCCCTCGTCTCTCTGGATAGGGGATCTGGAAAATTTGCTGCTCTC 60 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 TTGATCGAGCGGTGAAACTTTCTCACCATTCATCCATCCGGCGAAACTTCCACTGATGAA 120 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 TCGGACTTCCCAAACCTTTCCACGCTCTCGCTCCAAATGACCAAAAGCCAGAGGAGGAGG 180 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 GTTTCGCAGCAACAACGTGGGCGCCCACGGCCCGCGCCCGGTCAGCGAGGAAACAGATCG 240 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 AAAAAAAACAAAAGCCGCTGACGTCACGATCTCGAGGCTCGCGATTCCCAACAATCTCTT 300 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 TAAAAAGCTTCCTCTCGCCGAATCCCCCTCCACCTCCACCACCCGCCGCCGCCGCCGCCG 360 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 CCGCCGCCATGGCCTCCGACCTGCGCCCGCCGGAGCACCAGGTGGCGGGGCACCGCGCGT 420 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 CCGCCGACAAGCTGGGCCCGCTCGTCGACGGCGAGGGGCTCTTCTACAAGCCCCTCCAGA 480 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 CCGGGGAGCGCGGGGAGCACGAGGCCGCCTTCTACGCCGCGTTCACCGCGCACCCGGCCG 540 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 TCCCGCCCCGGGTCCGGGGCGCCTTCTTCCCGCGCTTCCACGGCACCCGCTTCCTCCCGG 600 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 CCCCAGCCAGCCCCGGCGGCGCGCCCTACCCGCACATCGTCCTCGACGACCTCCTCGCGG 660 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 GCCTCCCGTCCCCCTGCGTCGCCGACGTCAAGATCGGCGCCTGCACGTGGCCGCCGCGAT 720 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 CCCCGGACCCCTACGTCGCCAAGTGCCTCGCCAAGGACCGCGAGACCACCAGCGCGCTCC 780 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 TCGGCTTCCGCGTCTCCGGCGTCCGGGTGGTCGATGCCCGGGGCGGCGCCGTGTGGCGCC 840 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 CGGACCGGTCGGAGCTGAAGGGGATCGACGCCGCCGGGGTCCGCCGCGTGCTCCGCCGCT 900 consensus_2131#1 ------------------------------------------------------------ consensus_2131#0 ACGTGTCCACGGGCGGCGGCGACGGCCTGGA-CTGCGCGCT-CGCCGCCGCGGTGTACGG 958 consensus_2131#1 -----TCCACGGCCG--CGCGACGGCNTGGATCTGCGCGTTTCGCCGCCGCGGTGTACGG 53 ******* ** ******** **** ******* * ****************** consensus_2131#0 AGGGGAGGGCGGCGTCCTGGCTCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAAC 1018 consensus_2131#1 AGGGGAGG-CGGCNTCCTGGCGCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAAC 112 ******** **** ******* ************************************** consensus_2131#0 CCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGC 1078 consensus_2131#1 CCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGC 172 ************************************************************ consensus_2131#0 GGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGT 1138 consensus_2131#1 GGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGT 232 ************************************************************ consensus_2131#0 CGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAA 1198 consensus_2131#1 CGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAA 292 ************************************************************ consensus_2131#0 GTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAA 1258 consensus_2131#1 GTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAA 352 ************************************************************ consensus_2131#0 ATTTTGTCAGCTTGGAGATCAGATGATTAA-ACGGTCCAACATTGTGTTCTTGCAAATGT 1317 consensus_2131#1 ATTTTGTCAGCTTGGAGATCAGATGATTAACACGGTAAAGCAATGCCCCTCTATGTTTAT 412 ****************************** ***** * ** ** * * * consensus_2131#0 CACACATAATAAAGTGCCATCAAATGGAGAAAGAGTCAATTGTTTGAAAGAGGAAACTTC 1377 consensus_2131#1 TGTTCTTTTT---GTTTTGTTAGATTTGGATGA---CAAT-GTTAGACATTGAG----TC 461 * * * ** * * ** ** **** *** ** * * ** consensus_2131#0 ACCGAGCTGCCGGTAACGTAAATGCGAAGCGACTCACCGGCAGCTCTCCCGGCAAACTTA 1437 consensus_2131#1 AGTAAACAAAGGAGGATGTAAA-GCAAA---------CGGCAAATCTCTTGTGTCTTGGA 511 * * * * * ***** ** ** ***** **** * * consensus_2131#0 CGGCAACTGATACCTTTTTTTGCATACCCCCCTTTAAAACCATGGGATTCGGGGTGCATT 1497 consensus_2131#1 TTATGTTCTATACTGNTGGAAGAAGATTAAAGTATAAACAGAAAAAA------------- 558 **** * * * * * **** * * consensus_2131#0 GGATCTTACTCTTTAGTTGTATTAAAGAAATGGTGAACAAAAGATGGGCGTTGT 1551 consensus_2131#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||