These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2157#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1494 fasta sequence [CCAAAAGTATAATCAAGCAAAGCAGCTCGATCGAGTGTTCGACTGATCACCAGTTGGAGCTAATCGATCGAGAGAGAGAGTATGACGGTGGAAGTGGAGGCGGTGACGATGGCGAAGGAGGAGCAGCCGGAGGAGGAGGAGGTGATCGAGAAGTTGGTTGAGAAGATCACCGGGCTGGCGGCGGCCATCGGCAAGCTGCCGTCGCTGAGCCCGTCGCCGGAGGTGAACGCGCTGTTCACGGAGCTGGTGATGACCTGCATCCCGCCCAGCAGCGTGGACGTGGAGCAGCTGGGGGCGGAGGCGCAGGACATGCGCGGCCGCCTCATCCGCCTCTGCGCCGACGCCGAGGGCCACCTCGAGGCGCACTACTCCGACGTCCTCGCCGCCCACGACAACCCGCTCGACCACCTCGCCCTCTTCCCCTACTTCAACAACTACATCCAGCTCGCCCAGCTCGAGTACGCCCTCCTCGCCCGCCACCTCCCCGCCGCCCCGCCGCCCTCCCGCCTCGCCTTCCTCGGCTCCGGCCCGCTCCCGCTCAGCTCCCTCGTCCTCGCCGCCCGCCACCTCCCCGCCGCCTCCTTCCACAACTACGACATCTGCGCCGACGCCAACCGCCGCGCCAGCCGCCTCGTCCGCGCCGACCGCGACCTGTCCGCGCGCATGGCCTTCCACACCTCCGACGTCGCCCACGTCACCACCGACCTCGCCGCCTACGACGTCGTGTTCCTGGCGGCGCTGGTGGGTATGGCCGCCGAGGAGAAGGCGCGCATGGTGGAGCACCTCGGGAAGCACATGGCGCCCGGCGCCGCCCTGGTGGTGCGGAGCGCGCACGGCGCCCGGGGATTCCTGTACCCCGTGGTGGACCCGGAGGAGATCCGCCGCGGCGGCTTCGACGTGCTCGCCGTGCACCACCCGGAGGGCGAGGTGATCAACTCCGTCATCATCGCGCGCAAGCCGCCCGTGGCGGCGCCGGCGTTGGGGGGAGGAGACGCGCACGCGCACGGCCATGGCGCCGTGGTGAGCCGTCCATGCCAGCGCTGCGAGATGGAGGCGAGGGCGCACCAGAAGATGGAGGACATGTCCGCCATGGAGAAGCTGCCCTCCTCGTAGGCAGGCATCGATGACTGCTTCCATCGCTTGCTACCTCACCAGCTCACCTGATAAATCACCTCAGTTACTATCGATTAATCATTTACCATGCATTAATTAAGAAGAAAACATATATACCATAATTATCTACCAGTAAAACAAATCTAATAGTAGTATTTAATAATCTCGTTGGTAATTAACTGCAGTCATGCATGAATGCATGCCATATTGCGTCGCTATCTTTTTTTCCCATGATGAGACTGATGAGAGAGAGAGAGAATATATGTCGCTATTGAGTGTTACTGCTTGATTACTGTACTAGTAGCTTATTACAATCAACCATTGTCTCTGTTGCGTATTTATGAGTGTAAGTGGTTAATTTTCTGTTGCAGCATAATTAAG] [+] EMBL AK070656 [CCAAAAGTATAATCAAGCAAAGCAGCTCGATCGAGTGTTCGACTGATCACCAGTTGGAGCTAATCGATCGAGAGAGAGAGTATGACGGTGGAAGTGGAGGCGGTGACGATGGCGAAGGAGGAGCAGCCGGAGGAGGAGGAGGTGATCGAGAAGTTGGTTGAGAAGATCACCGGGCTGGCGGCGGCCATCGGCAAGCTGCCGTCGCTGAGCCCGTCGCCGGAGGTGAACGCGCTGTTCACGGAGCTGGTGATGACCTGCATCCCGCCCAGCAGCGTGGACGTGGAGCAGCTGGGGGCGGAGGCGCAGGACATGCGCGGCCGCCTCATCCGCCTCTGCGCCGACGCCGAGGGCCACCTCGAGGCGCACTACTCCGACGTCCTCGCCGCCCACGACAACCCGCTCGACCACCTCGCCCTCTTCCCCTACTTCAACAACTACATCCAGCTCGCCCAGCTCGAGTACGCCCTCCTCGCCCGCCACCTCCCCGCCGCCCCGCCGCCCTCCCGCCTCGCCTTCCTCGGCTCCGGCCCGCTCCCGCTCAGCTCCCTCGTCCTCGCCGCCCGCCACCTCCCCGCCGCCTCCTTCCACAACTACGACATCTGCGCCGACGCCAACCGCCGCGCCAGCCGCCTCGTCCGCGCCGACCGCGACCTGTCCGCGCGCATGGCCTTCCACACCTCCGACGTCGCCCACGTCACCACCGACCTCGCCGCCTACGACGTCGTGTTCCTGGCGGCGCTGGTGGGTATGGCCGCCGAGGAGAAGGCGCGCATGGTGGAGCACCTCGGGAAGCACATGGCGCCCGGCGCCGCCCTGGTGGTGCGGAGCGCGCACGGCGCCCGGGGATTCCTGTACCCCGTGGTGGACCCGGAGGAGATCCGCCGCGGCGGCTTCGACGTGCTCGCCGTGCACCACCCGGAGGGCGAGGTGATCAACTCCGTCATCATCGCGCGCAAGCCGCCCGTGGCGGCGCCGGCGTTGGGGGGAGGAGACGCGCACGCGCACGGCCATGGCGCCGTGGTGAGCCGTCCATGCCAGCGCTGCGAGATGGAGGCGAGGGCGCACCAGAAGATGGAGGACATGTCCGCCATGGAGAAGCTGCCCTCCTCGTAGGCAGGCATCGATGACTGCTTCCATCGCTTGCTACCTCACCAGCTCACCTGATAAATCACCTCAGTTACTATCGATTAATCATTTACCATGCATTAATTAAGAAGAAAACATATATACCATAATTATCTACCAGTAAAACAAATCTAATAGTAGTATTTAATAATCTCGTTGGTAATTAACTGCAGTCATGCATGAATGCATGCCATATTGCGTCGCTATCTTTTTTTCCCATGATGAGACTGATGAGAGAGAGAGAGAATATATGTCGCTATTGAGTGTTACTGCTTGATTACTGTACTAGTAGCTTATTACAATCAACCATTGTCTCTGTTGCGTATTTATGAGTGTAAGTGGTTAATTTTCTGTTGCAGCATAATTAAG] consensusID : consensus_2157#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1463 fasta sequence [AGCAGCTCGATCGAGTGTTCGACTGATCACCAGTTGGAGCTAATCGATCGAGAGAGAGAGTATGACGGTGGAAGTGGAGGCGGTGACCATGGCGAAGGAGGAGCAGCCGGAGGAGGAGGAGGTGATCGAGAAGTTGGTTGAGAAGATCACCGGGCTGGCGGCGGCCATCGGCAAGCTGCCGTCGCTGAGCCCGTCGCCGGAGGTGAACGCGCTGTTCACGGAGCTGGTGATGACCTGCATCCCGCCCAGCAGCGTGGACGTGGAGCAGCTGGGGGCGGAGGCGCAGGACATGCGCGGCCGCCTCATCCGCCTCTGCGCCGACGCCGAGGGCCACCTCGAGGCGCACTACTCCGACGTCCTCGCCGCCCACGACAACCCGCTCGACCACCTCGCCCTCTTCCCCTACTTCAACAACTACATCCAGCTCGCCCAGCTCGAGTACGCCCTCCTCGCCCGCCACCTCCCCGCCGCCCCGCCGCCCTCCCGCCTCGCCTTCCTCGGCTCCGGCCCGCTCCCGCTCAGCTCCCTCGTCCTCGCCGCCCGCCACCTCCCCGCCGCCTCCTTCCACAACTACGACATCTGCGCCGACGCCAACCGCCGCGCCAGCCGCCTCGTCCGCGCCGACCGCGACCTGTCCGCGCGCATGGCCTTCCACACCTCCGACGTCGCCCACGTCACCACCGACCTCGCCGCCTACGACGTCGTGTTCCTGGCGGCGCTGGTGGGTATGGCCGCCGAGGAGAAGGCGCGCATGGTGGAGCACCTCGGGAAGCACATGGCGCCCGGCGCCGCCCTGGTGGTGCGGACGGCGCACGGCGCCCGGGGATTCCTGTACCCCGTGGTGGACCCGGAGGAGATCCGCCGCGGCGGCTTCGACGTGCTCGCCGTGCACCACCCGGAGGGCGAGGTGATCAACTCCGTCATCATCGCGCGCAACCGCCCGTGGCCGGGGCCGGCGTTGGAGGGAGGAGACGCGCACGCGCACGGCCATGGCGCCGTGGTGAGCCGTCCATGCCAGCGCTGCGAGATGGAGGCGAGGGCGCACCAGAAGATGGAGGACATGTCCGCCATGGAGAAGCTGCCCTCCTCGTAGGCAGGCATCGATGACTGCTTCCATCGCTTGCTACCTCACCAGCTCACCTGATAAATCACCTCAGTTACTATCGATTAATCATTTACCATGCATTAATTAAGAAGAAAACATATATACCATAATTATCTACCAGTAAAACAAATCTAATAGTAGTATTTAATAATCTCGTTGGTAATTAACTGCAGTCATGCATGAATGCATGCCATATTGCGTCGCTATCTTTTTTTCCCATGATGAGACTGATGAGAGAGAGAGAGAATATATGTCGCTATTGAGTGTTACTGCTTGATTACTGTACTAGTAGCTTATTACAATCAACCATTGTCTCTGTTGCGTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AB023819 [AGCAGCTCGATCGAGTGTTCGACTGATCACCAGTTGGAGCTAATCGATCGAGAGAGAGAGTATGACGGTGGAAGTGGAGGCGGTGACCATGGCGAAGGAGGAGCAGCCGGAGGAGGAGGAGGTGATCGAGAAGTTGGTTGAGAAGATCACCGGGCTGGCGGCGGCCATCGGCAAGCTGCCGTCGCTGAGCCCGTCGCCGGAGGTGAACGCGCTGTTCACGGAGCTGGTGATGACCTGCATCCCGCCCAGCAGCGTGGACGTGGAGCAGCTGGGGGCGGAGGCGCAGGACATGCGCGGCCGCCTCATCCGCCTCTGCGCCGACGCCGAGGGCCACCTCGAGGCGCACTACTCCGACGTCCTCGCCGCCCACGACAACCCGCTCGACCACCTCGCCCTCTTCCCCTACTTCAACAACTACATCCAGCTCGCCCAGCTCGAGTACGCCCTCCTCGCCCGCCACCTCCCCGCCGCCCCGCCGCCCTCCCGCCTCGCCTTCCTCGGCTCCGGCCCGCTCCCGCTCAGCTCCCTCGTCCTCGCCGCCCGCCACCTCCCCGCCGCCTCCTTCCACAACTACGACATCTGCGCCGACGCCAACCGCCGCGCCAGCCGCCTCGTCCGCGCCGACCGCGACCTGTCCGCGCGCATGGCCTTCCACACCTCCGACGTCGCCCACGTCACCACCGACCTCGCCGCCTACGACGTCGTGTTCCTGGCGGCGCTGGTGGGTATGGCCGCCGAGGAGAAGGCGCGCATGGTGGAGCACCTCGGGAAGCACATGGCGCCCGGCGCCGCCCTGGTGGTGCGGACGGCGCACGGCGCCCGGGGATTCCTGTACCCCGTGGTGGACCCGGAGGAGATCCGCCGCGGCGGCTTCGACGTGCTCGCCGTGCACCACCCGGAGGGCGAGGTGATCAACTCCGTCATCATCGCGCGCAACCGCCCGTGGCCGGGGCCGGCGTTGGAGGGAGGAGACGCGCACGCGCACGGCCATGGCGCCGTGGTGAGCCGTCCATGCCAGCGCTGCGAGATGGAGGCGAGGGCGCACCAGAAGATGGAGGACATGTCCGCCATGGAGAAGCTGCCCTCCTCGTAGGCAGGCATCGATGACTGCTTCCATCGCTTGCTACCTCACCAGCTCACCTGATAAATCACCTCAGTTACTATCGATTAATCATTTACCATGCATTAATTAAGAAGAAAACATATATACCATAATTATCTACCAGTAAAACAAATCTAATAGTAGTATTTAATAATCTCGTTGGTAATTAACTGCAGTCATGCATGAATGCATGCCATATTGCGTCGCTATCTTTTTTTCCCATGATGAGACTGATGAGAGAGAGAGAGAATATATGTCGCTATTGAGTGTTACTGCTTGATTACTGTACTAGTAGCTTATTACAATCAACCATTGTCTCTGTTGCGTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2157#0 CCAAAAGTATAATCAAGCAAAGCAGCTCGATCGAGTGTTCGACTGATCACCAGTTGGAGC 60 consensus_2157#1 --------------------AGCAGCTCGATCGAGTGTTCGACTGATCACCAGTTGGAGC 40 **************************************** consensus_2157#0 TAATCGATCGAGAGAGAGAGTATGACGGTGGAAGTGGAGGCGGTGACGATGGCGAAGGAG 120 consensus_2157#1 TAATCGATCGAGAGAGAGAGTATGACGGTGGAAGTGGAGGCGGTGACCATGGCGAAGGAG 100 *********************************************** ************ consensus_2157#0 GAGCAGCCGGAGGAGGAGGAGGTGATCGAGAAGTTGGTTGAGAAGATCACCGGGCTGGCG 180 consensus_2157#1 GAGCAGCCGGAGGAGGAGGAGGTGATCGAGAAGTTGGTTGAGAAGATCACCGGGCTGGCG 160 ************************************************************ consensus_2157#0 GCGGCCATCGGCAAGCTGCCGTCGCTGAGCCCGTCGCCGGAGGTGAACGCGCTGTTCACG 240 consensus_2157#1 GCGGCCATCGGCAAGCTGCCGTCGCTGAGCCCGTCGCCGGAGGTGAACGCGCTGTTCACG 220 ************************************************************ consensus_2157#0 GAGCTGGTGATGACCTGCATCCCGCCCAGCAGCGTGGACGTGGAGCAGCTGGGGGCGGAG 300 consensus_2157#1 GAGCTGGTGATGACCTGCATCCCGCCCAGCAGCGTGGACGTGGAGCAGCTGGGGGCGGAG 280 ************************************************************ consensus_2157#0 GCGCAGGACATGCGCGGCCGCCTCATCCGCCTCTGCGCCGACGCCGAGGGCCACCTCGAG 360 consensus_2157#1 GCGCAGGACATGCGCGGCCGCCTCATCCGCCTCTGCGCCGACGCCGAGGGCCACCTCGAG 340 ************************************************************ consensus_2157#0 GCGCACTACTCCGACGTCCTCGCCGCCCACGACAACCCGCTCGACCACCTCGCCCTCTTC 420 consensus_2157#1 GCGCACTACTCCGACGTCCTCGCCGCCCACGACAACCCGCTCGACCACCTCGCCCTCTTC 400 ************************************************************ consensus_2157#0 CCCTACTTCAACAACTACATCCAGCTCGCCCAGCTCGAGTACGCCCTCCTCGCCCGCCAC 480 consensus_2157#1 CCCTACTTCAACAACTACATCCAGCTCGCCCAGCTCGAGTACGCCCTCCTCGCCCGCCAC 460 ************************************************************ consensus_2157#0 CTCCCCGCCGCCCCGCCGCCCTCCCGCCTCGCCTTCCTCGGCTCCGGCCCGCTCCCGCTC 540 consensus_2157#1 CTCCCCGCCGCCCCGCCGCCCTCCCGCCTCGCCTTCCTCGGCTCCGGCCCGCTCCCGCTC 520 ************************************************************ consensus_2157#0 AGCTCCCTCGTCCTCGCCGCCCGCCACCTCCCCGCCGCCTCCTTCCACAACTACGACATC 600 consensus_2157#1 AGCTCCCTCGTCCTCGCCGCCCGCCACCTCCCCGCCGCCTCCTTCCACAACTACGACATC 580 ************************************************************ consensus_2157#0 TGCGCCGACGCCAACCGCCGCGCCAGCCGCCTCGTCCGCGCCGACCGCGACCTGTCCGCG 660 consensus_2157#1 TGCGCCGACGCCAACCGCCGCGCCAGCCGCCTCGTCCGCGCCGACCGCGACCTGTCCGCG 640 ************************************************************ consensus_2157#0 CGCATGGCCTTCCACACCTCCGACGTCGCCCACGTCACCACCGACCTCGCCGCCTACGAC 720 consensus_2157#1 CGCATGGCCTTCCACACCTCCGACGTCGCCCACGTCACCACCGACCTCGCCGCCTACGAC 700 ************************************************************ consensus_2157#0 GTCGTGTTCCTGGCGGCGCTGGTGGGTATGGCCGCCGAGGAGAAGGCGCGCATGGTGGAG 780 consensus_2157#1 GTCGTGTTCCTGGCGGCGCTGGTGGGTATGGCCGCCGAGGAGAAGGCGCGCATGGTGGAG 760 ************************************************************ consensus_2157#0 CACCTCGGGAAGCACATGGCGCCCGGCGCCGCCCTGGTGGTGCGGAGCGCGCACGGCGCC 840 consensus_2157#1 CACCTCGGGAAGCACATGGCGCCCGGCGCCGCCCTGGTGGTGCGGACGGCGCACGGCGCC 820 ********************************************** ************ consensus_2157#0 CGGGGATTCCTGTACCCCGTGGTGGACCCGGAGGAGATCCGCCGCGGCGGCTTCGACGTG 900 consensus_2157#1 CGGGGATTCCTGTACCCCGTGGTGGACCCGGAGGAGATCCGCCGCGGCGGCTTCGACGTG 880 ************************************************************ consensus_2157#0 CTCGCCGTGCACCACCCGGAGGGCGAGGTGATCAACTCCGTCATCATCGCGCGCAAGCCG 960 consensus_2157#1 CTCGCCGTGCACCACCCGGAGGGCGAGGTGATCAACTCCGTCATCATCGCGCGCAA-CCG 939 ******************************************************** *** consensus_2157#0 CCCGTGGC-GGCGCCGGCGTTGGGGGGAGGAGACGCGCACGCGCACGGCCATGGCGCCGT 1019 consensus_2157#1 CCCGTGGCCGGGGCCGGCGTTGGAGGGAGGAGACGCGCACGCGCACGGCCATGGCGCCGT 999 ******** ** *********** ************************************ consensus_2157#0 GGTGAGCCGTCCATGCCAGCGCTGCGAGATGGAGGCGAGGGCGCACCAGAAGATGGAGGA 1079 consensus_2157#1 GGTGAGCCGTCCATGCCAGCGCTGCGAGATGGAGGCGAGGGCGCACCAGAAGATGGAGGA 1059 ************************************************************ consensus_2157#0 CATGTCCGCCATGGAGAAGCTGCCCTCCTCGTAGGCAGGCATCGATGACTGCTTCCATCG 1139 consensus_2157#1 CATGTCCGCCATGGAGAAGCTGCCCTCCTCGTAGGCAGGCATCGATGACTGCTTCCATCG 1119 ************************************************************ consensus_2157#0 CTTGCTACCTCACCAGCTCACCTGATAAATCACCTCAGTTACTATCGATTAATCATTTAC 1199 consensus_2157#1 CTTGCTACCTCACCAGCTCACCTGATAAATCACCTCAGTTACTATCGATTAATCATTTAC 1179 ************************************************************ consensus_2157#0 CATGCATTAATTAAGAAGAAAACATATATACCATAATTATCTACCAGTAAAACAAATCTA 1259 consensus_2157#1 CATGCATTAATTAAGAAGAAAACATATATACCATAATTATCTACCAGTAAAACAAATCTA 1239 ************************************************************ consensus_2157#0 ATAGTAGTATTTAATAATCTCGTTGGTAATTAACTGCAGTCATGCATGAATGCATGCCAT 1319 consensus_2157#1 ATAGTAGTATTTAATAATCTCGTTGGTAATTAACTGCAGTCATGCATGAATGCATGCCAT 1299 ************************************************************ consensus_2157#0 ATTGCGTCGCTATCTTTTTTTCCCATGATGAGACTGATGAGAGAGAGAGAGAATATATGT 1379 consensus_2157#1 ATTGCGTCGCTATCTTTTTTTCCCATGATGAGACTGATGAGAGAGAGAGAGAATATATGT 1359 ************************************************************ consensus_2157#0 CGCTATTGAGTGTTACTGCTTGATTACTGTACTAGTAGCTTATTACAATCAACCATTGTC 1439 consensus_2157#1 CGCTATTGAGTGTTACTGCTTGATTACTGTACTAGTAGCTTATTACAATCAACCATTGTC 1419 ************************************************************ consensus_2157#0 TCTGTTGCGTATTTATGAGTGTAAGTGGTTAATTTTCTGTTGCAGCATAATTAAG 1494 consensus_2157#1 TCTGTTGCGTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 1463 *************** * ** ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||