These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1600 fasta sequence [TCCGCCCATCTACCTCCCTCCTCCGTCCACCCTAACTACGGCGGGTCGCCGGCCATGCTCGCGTTCGCGGTCATCGTCTCGCCTTCCGCGTGGCCGAGAGCCGTCTCCTCAGCTTTCGCGGCGGCCGTCTTCGCGTTCCTGGACGTCGTCGACGTGCTCCTCTGCTTCGTGTACGGCTTCCTCGACGCCGTCTTCGAGGACAGCCCGGTCAGCTGCTACTGCCACGGGAGCCACAGCGCGGCGGCGCTGGACGACGACGACGAGGTCTCCGACACATTGTACCACCGGCGGAGCGCTCTCCGAGACGCGCTGATGGGGCTCGTCAGAGGCAGGAGCGGCGGCTCGCCGGAGACGGAGACGGAGCGGCGCAAGGGGCGGAGCCCGAGGTGGTCGGACTGCGGCTGCGATTCGTGCCGCGCATGGCAGCGCCACGACGACGGCCGGCTGCACTTCGTCGCCAACCAACCGCCGCCGCCGCCAAACGATGGAGCAGTGACAACGACGCAGCAGAGTGGAGAAGAAGACGCCATCTTCATCCACGGCTTCACCTCGTCATCGTCGTTCTGGGCAACAGTGTTCCGCGAATCATCCATCCTCAACAACTGCAGAATGTTGGCGGTCGATCTCCTCGGCTTCGGCAAGTCTCCCAAGCCGGCAAACTGCATGTACAGACTGAAAGATCACGTCGAGATGATCGAGCGGAGCCTCATCGATCCACTCAACCTGAGCTCCTTCCATCTTGTCAGCCACTCCATGGGCTGCATCATCGCCCTCGCATTGGCTGCCAAGCACCCAGAACGAGTCAGATCAATCACACTGATTGCACCGCCGTACTTCGGAGCATGCGAAGAGAAGGCGAGCCAAGTGGCACTGAAGAGACTGGCGGAGAAGAAGCTGTGGCCGCCATTGCAGTTCGGATCCGCAGTGATGTCATGGTACGAGCACATTGGGAGGACTGTCTGCTTCTTGGTCTGCAAAAATCACCTGCTCTGGGAGCGCCTCTTCAGGCTCATCACAGGAAAGAGGGATGTGGACTTTCTGCTGGGTGATCTGACGAAGCACACGCACCACTCGGCGTGGCACACGATGCACAACGTCATCTGCGGTGGGGCCATGCTGCAGGACAGGAACCTGGAGGCCGTCGAGGCGGCCGGCGTCCCGGTGCAGGTGATCCACGGCGGCGACGATCAGGTGGTTCCGGCGGAGTGCGGCCGCCACCTCAAGGCCAAGCTTCCCGGCGCCGAGCTCCGACTCATGGAAGGCTGCGACCACAAGACGGTGGTTTTCGGCAGGGAGAGGGGATTTGCTGAGGAGCTCAGAGCATTCTGGTCCGCGTCTCATCAGAATAAGCAGCTAGCAGCATCTGCATCAGGGTGGGCAGGTTAACGGATGTTGATTGTTGGTGTGTAGAATAATGTCTGATATGAAATCATGATGTAGCATAGAGAAATTCAGTCCACACTTTGAAATTACTGGTACTACAATTTTTAGAGATTAAAGACTAGGGTGAATCCATCGACACGTTTCTTTCGTCAGAACAGTGTCCGTATATTGGAAAATCCTTTTCTAGCTCGTGGATTGGCAGATTAATCTTTGAATT] [+] EMBL AK070883 [TCCGCCCATCTACCTCCCTCCTCCGTCCACCCTAACTACGGCGGGTCGCCGGCCATGCTCGCGTTCGCGGTCATCGTCTCGCCTTCCGCGTGGCCGAGAGCCGTCTCCTCAGCTTTCGCGGCGGCCGTCTTCGCGTTCCTGGACGTCGTCGACGTGCTCCTCTGCTTCGTGTACGGCTTCCTCGACGCCGTCTTCGAGGACAGCCCGGTCAGCTGCTACTGCCACGGGAGCCACAGCGCGGCGGCGCTGGACGACGACGACGAGGTCTCCGACACATTGTACCACCGGCGGAGCGCTCTCCGAGACGCGCTGATGGGGCTCGTCAGAGGCAGGAGCGGCGGCTCGCCGGAGACGGAGACGGAGCGGCGCAAGGGGCGGAGCCCGAGGTGGTCGGACTGCGGCTGCGATTCGTGCCGCGCATGGCAGCGCCACGACGACGGCCGGCTGCACTTCGTCGCCAACCAACCGCCGCCGCCGCCAAACGATGGAGCAGTGACAACGACGCAGCAGAGTGGAGAAGAAGACGCCATCTTCATCCACGGCTTCACCTCGTCATCGTCGTTCTGGGCAACAGTGTTCCGCGAATCATCCATCCTCAACAACTGCAGAATGTTGGCGGTCGATCTCCTCGGCTTCGGCAAGTCTCCCAAGCCGGCAAACTGCATGTACAGACTGAAAGATCACGTCGAGATGATCGAGCGGAGCCTCATCGATCCACTCAACCTGAGCTCCTTCCATCTTGTCAGCCACTCCATGGGCTGCATCATCGCCCTCGCATTGGCTGCCAAGCACCCAGAACGAGTCAGATCAATCACACTGATTGCACCGCCGTACTTCGGAGCATGCGAAGAGAAGGCGAGCCAAGTGGCACTGAAGAGACTGGCGGAGAAGAAGCTGTGGCCGCCATTGCAGTTCGGATCCGCAGTGATGTCATGGTACGAGCACATTGGGAGGACTGTCTGCTTCTTGGTCTGCAAAAATCACCTGCTCTGGGAGCGCCTCTTCAGGCTCATCACAGGAAAGAGGGATGTGGACTTTCTGCTGGGTGATCTGACGAAGCACACGCACCACTCGGCGTGGCACACGATGCACAACGTCATCTGCGGTGGGGCCATGCTGCAGGACAGGAACCTGGAGGCCGTCGAGGCGGCCGGCGTCCCGGTGCAGGTGATCCACGGCGGCGACGATCAGGTGGTTCCGGCGGAGTGCGGCCGCCACCTCAAGGCCAAGCTTCCCGGCGCCGAGCTCCGACTCATGGAAGGCTGCGACCACAAGACGGTGGTTTTCGGCAGGGAGAGGGGATTTGCTGAGGAGCTCAGAGCATTCTGGTCCGCGTCTCATCAGAATAAGCAGCTAGCAGCATCTGCATCAGGGTGGGCAGGTTAACGGATGTTGATTGTTGGTGTGTAGAATAATGTCTGATATGAAATCATGATGTAGCATAGAGAAATTCAGTCCACACTTTGAAATTACTGGTACTACAATTTTTAGAGATTAAAGACTAGGGTGAATCCATCGACACGTTTCTTTCGTCAGAACAGTGTCCGTATATTGGAAAATCCTTTTCTAGCTCGTGGATTGGCAGATTAATCTTTGAATT] consensusID : consensus_2207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 913 fasta sequence [CCTCCGTCCACCCTAACTACGGCGGGTCGCCGGCCATGCTCGCGTTCGCGGTCATCGTCTCGCCTTCCGCGTGGCCGAGAGCCGTCTCCTCAGCTTTCGCGGCGGCCGTCTTCGCGTTCCTGGACGTCGTCGACGTGCTCCTCTGCTTCGTGTACGGCTTCCTCGACGCCGTCTTCGAGGACAGCCCGGTCAGCTGCTACTGCCACGGGAGCCACAGCGCGGCGGCGCTGGACGACGACGACGAGGTCTCCGACACATTGTACCACCGGCGGAGCGCTCTCCGAGACGCGCTGATGGGGCTCGTCAGAGGCACGAGCGGCGGCTCGNCGGAGACGGAGACNGAGCGGCGCAAGGGGCGGAGCCCCAGGGGGACNGACTGCGGCTGCGAATCTAGCCCCGCATGGGAAGGGCACGACAAACGGGCCGATTGCTCTTAGACTTCAACCTTATCGGCGACCACCACTATATTTAGGGAGCGTAGCCCACTACGCCTACTCAAATGGTGAATGAGGATGCCATCATTCATCTATGAGTTTACGATAATGTCTTGGGTGCGGAGGTAAAAGGTTCCACGATATAAACATTCTAATTTACTGGTATATTTTAAGCTGCTACTAACTATGTATAATGTGGTGTTCTAATGTCATGTGACCCGTATAACATATTATAGATGCAGGTCGAAATGGTCATTGCATCGTAATTTAGCATTAGGCGATGAGCTGAACAACAAGTCATTTTATATGGATGATGATCTGCTTACGTGTATGATACTGATAAATAGTCCTGAGTATTACATGAATTATGTAGGTGTAGAATAGTATATATGTATATGCAGCTGGACGTATATTAGTATCTCATCGGTGATCTATGATATGGATTGTATGGTGTCGTGCAAGTGTATTGATGTAATCTA] [+] EMBL AW154993 [CCTCCGTCCACCCTAACTACGGCGGGTCGCCGGCCATGCTCGCGTTCGCGGTCATCGTCTCGCCTTCCGCGTGGCCGAGAGCCGTCTCCTCAGCTTTCGCGGCGGCCGTCTTCGCGTTCCTGGACGTCGTCGACGTGCTCCTCTGCTTCGTGTACGGCTTCCTCGACGCCGTCTTCGAGGACAGCCCGGTCAGCTGCTACTGCCACGGGAGCCACAGCGCGGCGGCGCTGGACGACGACGACGAGGTCTCCGACACATTGTACCACCGGCGGAGCGCTCTCCGAGACGCGCTGATGGGGCTCGTCAGAGGCACGAGCGGCGGCTCGNCGGAGACGGAGACNGAGCGGCGCAAGGGGCGGAGCCCCAGGGGGACNGACTGCGGCTGCGAATCTAGCCCCGCATGGGAAGGGCACGACAAACGGGCCGATTGCTCTTAGACTTCAACCTTATCGGCGACCACCACTATATTTAGGGAGCGTAGCCCACTACGCCTACTCAAATGGTGAATGAGGATGCCATCATTCATCTATGAGTTTACGATAATGTCTTGGGTGCGGAGGTAAAAGGTTCCACGATATAAACATTCTAATTTACTGGTATATTTTAAGCTGCTACTAACTATGTATAATGTGGTGTTCTAATGTCATGTGACCCGTATAACATATTATAGATGCAGGTCGAAATGGTCATTGCATCGTAATTTAGCATTAGGCGATGAGCTGAACAACAAGTCATTTTATATGGATGATGATCTGCTTACGTGTATGATACTGATAAATAGTCCTGAGTATTACATGAATTATGTAGGTGTAGAATAGTATATATGTATATGCAGCTGGACGTATATTAGTATCTCATCGGTGATCTATGATATGGATTGTATGGTGTCGTGCAAGTGTATTGATGTAATCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2207#0 TCCGCCCATCTACCTCCCTCCTCCGTCCACCCTAACTACGGCGGGTCGCCGGCCATGCTC 60 consensus_2207#1 -------------------CCTCCGTCCACCCTAACTACGGCGGGTCGCCGGCCATGCTC 41 ***************************************** consensus_2207#0 GCGTTCGCGGTCATCGTCTCGCCTTCCGCGTGGCCGAGAGCCGTCTCCTCAGCTTTCGCG 120 consensus_2207#1 GCGTTCGCGGTCATCGTCTCGCCTTCCGCGTGGCCGAGAGCCGTCTCCTCAGCTTTCGCG 101 ************************************************************ consensus_2207#0 GCGGCCGTCTTCGCGTTCCTGGACGTCGTCGACGTGCTCCTCTGCTTCGTGTACGGCTTC 180 consensus_2207#1 GCGGCCGTCTTCGCGTTCCTGGACGTCGTCGACGTGCTCCTCTGCTTCGTGTACGGCTTC 161 ************************************************************ consensus_2207#0 CTCGACGCCGTCTTCGAGGACAGCCCGGTCAGCTGCTACTGCCACGGGAGCCACAGCGCG 240 consensus_2207#1 CTCGACGCCGTCTTCGAGGACAGCCCGGTCAGCTGCTACTGCCACGGGAGCCACAGCGCG 221 ************************************************************ consensus_2207#0 GCGGCGCTGGACGACGACGACGAGGTCTCCGACACATTGTACCACCGGCGGAGCGCTCTC 300 consensus_2207#1 GCGGCGCTGGACGACGACGACGAGGTCTCCGACACATTGTACCACCGGCGGAGCGCTCTC 281 ************************************************************ consensus_2207#0 CGAGACGCGCTGATGGGGCTCGTCAGAGGCAGGAGCGGCGGCTCGCCGGAGACGGAGACG 360 consensus_2207#1 CGAGACGCGCTGATGGGGCTCGTCAGAGGCACGAGCGGCGGCTCGNCGGAGACGGAGACN 341 ******************************* ************* ************* consensus_2207#0 GAGCGGCGCAAGGGGCGGAGCCCGAGGTGGTCGGACTGCGGCTGCGATTCGTGCCGCGCA 420 consensus_2207#1 GAGCGGCGCAAGGGGCGGAGCCCCAGGGGGACNGACTGCGGCTGCGAATCTAGCCCCGCA 401 *********************** *** ** * ************** ** *** **** consensus_2207#0 TGGCAGCGCCACGACGAC--GGCCGGCTGCACTTCGTCGCCAACC--AACCGCCGCCGCC 476 consensus_2207#1 TGGGAAGGGCACGACAAACGGGCCGATTGCTCTTAGACTTCAACCTTATCGGCGACCACC 461 *** * * ****** * ***** *** *** * * ***** * * ** ** ** consensus_2207#0 GCCAAACG-ATGGAGCAGTGACAACGACGC--AGCAGAGTGGAGAA-GAAGACGCCATC- 531 consensus_2207#1 ACTATATTTAGGGAGCGTAGCCCACTACGCCTACTCAAATGGTGAATGAGGATGCCATCA 521 * * * * ***** * * ** **** * * *** *** ** ** ****** consensus_2207#0 TTCATCCACGGCTTCACCTCGTCATCGTCGTTCTGGGCA-ACAGTGTTCCGCGAATCATC 590 consensus_2207#1 TTCATCTATGAGTTTACGATAATGTCTTGGGTGCGGAGGTAAAAGGTTCCACGATATAAA 581 ****** * * ** ** ** * * * ** * * ***** *** * consensus_2207#0 CATCCTCAACAACTGCAGAATGTTGGCGGTCGATCTCCTCGGCTTCGGCAAGTCTCCCAA 650 consensus_2207#1 CATTCTAATTTACTGGTATATTTTAAGCTGCTACTAACTATGTATAATGTGGTGTTCTAA 641 *** ** * **** ** ** * * ** * * ** * * ** consensus_2207#0 -GCCG-GCAAACTGCATGTACAGACTGAAAGATCACGTCGAGATGATCGAGCGGAGCCTC 708 consensus_2207#1 TGTCATGTGACCCGTATA-ACATATTATAGATGCAGGTCGAAATGGTC-ATTGCATCGTA 699 * * * * * * ** *** * * * ** ***** *** ** * * * * * consensus_2207#0 ATCGATCCACTCAACCTGAGCTCCTTCCATCTTGTCAGCCACTCCATGGGCTGCATCATC 768 consensus_2207#1 ATTTAGCATTAGGCGATGAGCT------GAACAACAAGTCATTTTATA---TGGATGATG 750 ** * * ****** ** ** * ** ** ** ** consensus_2207#0 GCCCTCGCATTGGCTGCCAAGCACCCAGAACGAGTCAGATCAATCACACTGATTGCACCG 828 consensus_2207#1 ATCTGC---TTACGTGTATGATACTGATAAATAGTCCTGAGTATTACATGAATTATGTAG 807 * * ** ** ** * ** **** ** *** *** * consensus_2207#0 CCGTACTTCGGAGCATGCGAAGAGAAGGCGAGCCAAGTGGCACTGAAGAGACTGGCGGAG 888 consensus_2207#1 GTGTAGAATAGTATATATGTATATGCAGCTGGACGTATATTAGT-ATCTCATCGGTGATC 866 *** * ** * * * ** * * * * * * * ** * consensus_2207#0 AAGAAGCTGTGGCCGCCATTGCAGTTCGGATCCGCAGTGATGTCATGGTACGAGCACATT 948 consensus_2207#1 TATGA--TATGGATTGTATGGTGTCGTGCAAGTGTATTGATGTAATC-TA---------- 913 * * * *** ** * * * * * ****** ** ** consensus_2207#0 GGGAGGACTGTCTGCTTCTTGGTCTGCAAAAATCACCTGCTCTGGGAGCGCCTCTTCAGG 1008 consensus_2207#1 ------------------------------------------------------------ consensus_2207#0 CTCATCACAGGAAAGAGGGATGTGGACTTTCTGCTGGGTGATCTGACGAAGCACACGCAC 1068 consensus_2207#1 ------------------------------------------------------------ consensus_2207#0 CACTCGGCGTGGCACACGATGCACAACGTCATCTGCGGTGGGGCCATGCTGCAGGACAGG 1128 consensus_2207#1 ------------------------------------------------------------ consensus_2207#0 AACCTGGAGGCCGTCGAGGCGGCCGGCGTCCCGGTGCAGGTGATCCACGGCGGCGACGAT 1188 consensus_2207#1 ------------------------------------------------------------ consensus_2207#0 CAGGTGGTTCCGGCGGAGTGCGGCCGCCACCTCAAGGCCAAGCTTCCCGGCGCCGAGCTC 1248 consensus_2207#1 ------------------------------------------------------------ consensus_2207#0 CGACTCATGGAAGGCTGCGACCACAAGACGGTGGTTTTCGGCAGGGAGAGGGGATTTGCT 1308 consensus_2207#1 ------------------------------------------------------------ consensus_2207#0 GAGGAGCTCAGAGCATTCTGGTCCGCGTCTCATCAGAATAAGCAGCTAGCAGCATCTGCA 1368 consensus_2207#1 ------------------------------------------------------------ consensus_2207#0 TCAGGGTGGGCAGGTTAACGGATGTTGATTGTTGGTGTGTAGAATAATGTCTGATATGAA 1428 consensus_2207#1 ------------------------------------------------------------ consensus_2207#0 ATCATGATGTAGCATAGAGAAATTCAGTCCACACTTTGAAATTACTGGTACTACAATTTT 1488 consensus_2207#1 ------------------------------------------------------------ consensus_2207#0 TAGAGATTAAAGACTAGGGTGAATCCATCGACACGTTTCTTTCGTCAGAACAGTGTCCGT 1548 consensus_2207#1 ------------------------------------------------------------ consensus_2207#0 ATATTGGAAAATCCTTTTCTAGCTCGTGGATTGGCAGATTAATCTTTGAATT 1600 consensus_2207#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||