These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 925 fasta sequence [GAATTCGGCACGAGTCCAGCAGCCACAACATCCCCTAATTCATTCAATACATCTGTGACCCGAAGTTTTCCATCAGCTTTGGGTTCACAAATATTTCCTCTTCTCTTTTCATCTTAATCCCATCCGTCTGATATTATTCTGTTCGCAATCCCGATAGCTCCGCGACAAAGCCGCCCATCATGAAGGGAGCTATGATGACAGCAGCTGTGCTGCTTGGCACCGCCGAGGCCGGTGTCCACAAGCTCAAGATGAAGAAGATTCCCTTGGAGGACCAGCTTAAAACCTTCGACCTCAATGCACAGATGCGAGGTCTCGGCCAGAAGTACCTCGGCATCCGCCCTGAATCGCACCAGCAGGCTGTCTTCAGCAATGATGCCGTTCAGGCCAGCGGGAACCACCCTGTGCCGATCAGCAACTTCATGAACGCGCAGTACTTCTCTCAGATCACCATCGGCACTCCTCCCCAGAATTTCAAGGTCATCCTCGACACTGGAAGCTCTAAACCTCTGGTCCCTCATCGTCTNGCGGTCTATNCGCTGTATCTCACAACAAGTACGATCGCTTCTCATCACTACAAGAAAACNGGACGAGTTAGATCATATGGTCNGCGCATGGAGGTGTCTTCNACATGTTTACCATCGAGACTCAGATCAGAACTTGCTTCTCGAACTCTAAAGACCTGGTGCTTTGCTTTGCGATTACGAAACCCGATGTGTAAAGCTGCGGAAAAATGCCCTCTATCCTGGACAAACTATTAAACTGTTCCTTCTCTTAAAAAAAACAGGAGTTTGGTTGGCCNCCGAAACAAACCCCCACGCGTGTGGGTTTGTGTGTTTTCTTAAATGATACNCCTTCTCTTCACTTCTTCTANTCTTTTNTCTTCTGGAAGGAAGAAGAGATGATGAACATGCACTCCGATATGTTG] [+] EMBL AW155193 [GAATTCGGCACGAGTCCAGCAGCCACAACATCCCCTAATTCATTCAATACATCTGTGACCCGAAGTTTTCCATCAGCTTTGGGTTCACAAATATTTCCTCTTCTCTTTTCATCTTAATCCCATCCGTCTGATATTATTCTGTTCGCAATCCCGATAGCTCCGCGACAAAGCCGCCCATCATGAAGGGAGCTATGATGACAGCAGCTGTGCTGCTTGGCACCGCCGAGGCCGGTGTCCACAAGCTCAAGATGAAGAAGATTCCCTTGGAGGACCAGCTTAAAACCTTCGACCTCAATGCACAGATGCGAGGTCTCGGCCAGAAGTACCTCGGCATCCGCCCTGAATCGCACCAGCAGGCTGTCTTCAGCAATGATGCCGTTCAGGCCAGCGGGAACCACCCTGTGCCGATCAGCAACTTCATGAACGCGCAGTACTTCTCTCAGATCACCATCGGCACTCCTCCCCAGAATTTCAAGGTCATCCTCGACACTGGAAGCTCTAAACCTCTGGTCCCTCATCGTCTNGCGGTCTATNCGCTGTATCTCACAACAAGTACGATCGCTTCTCATCACTACAAGAAAACNGGACGAGTTAGATCATATGGTCNGCGCATGGAGGTGTCTTCNACATGTTTACCATCGAGACTCAGATCAGAACTTGCTTCTCGAACTCTAAAGACCTGGTGCTTTGCTTTGCGATTACGAAACCCGATGTGTAAAGCTGCGGAAAAATGCCCTCTATCCTGGACAAACTATTAAACTGTTCCTTCTCTTAAAAAAAACAGGAGTTTGGTTGGCCNCCGAAACAAACCCCCACGCGTGTGGGTTTGTGTGTTTTCTTAAATGATACNCCTTCTCTTCACTTCTTCTANTCTTTTNTCTTCTGGAAGGAAGAAGAGATGATGAACATGCACTCCGATATGTTG] consensusID : consensus_2214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 868 fasta sequence [CAGCAGCCACAACATCCCCTAATTCATTCAATACATCTGTGACCCGAAGTTTTCCATCAGCTTTGGGTTCACAAATATTTCCTCTTCTCTTTTCATCTTAATCCCATCCGTCTGATATTATTCTGTTCGCAATCCCGATAGCTCCGCGACAAAGCCGCCCATCATGAAGGGAGCTATGATGACAGCAGCTGTGCTGCTTGGCACCGCCGAGGCCGGTGTCCACAAGCTCAAGATGAAGAAGATTCCCTTGGAGGACCAGCTTAAAACCTTCGACCTCAATGCACAGATGCGAGGTCTCGGCCAGAAGTACCTCGGCATCCGCCCTGAATCGCACCAGCATGCTGTCTTCAGCAATGATGCCGTTCAGGCCAGCGGGAACCACCCTGTGCCGATCAGCAACTTCATGAACGCGCAGTACTTCTCCGAGATCACCATCAGCACTCCTGCTCAGAATTTCAGGGCATCCTCGACACTGGAAGCTCTACGCTCTGGGTCCCTCATCGTCTTGGGGTCTATGGTAGTAATCTCACAACAAGTCGAATCGTCTGCTTATTGACTACATAAGAACGGACCGATTTAGAACCATTAGCTCCGCGCTTGAGGGTTGTTTCCACAGGTTTGACTTCGGAACTTGGACATACCTGGATGTCCAACTCTATGACCTGGTTGCTATGCTTTGCCATTAACGAATCTCGATGGTTTAAGGCTGTCGAATAAATGTCCGCCTTCCCTGGTGCCAACTATGTACACTGGACTTTACTCTGTGAAGATATCGGTTTATGGGTTATACTACTTAGAAACTTCTCTGTGGCGTTTAGGGCGATTTGTTGTGGGATGTTCCATAGAACTCTTGTTCGCTCTATGTTAG] [+] EMBL AW155261 [CAGCAGCCACAACATCCCCTAATTCATTCAATACATCTGTGACCCGAAGTTTTCCATCAGCTTTGGGTTCACAAATATTTCCTCTTCTCTTTTCATCTTAATCCCATCCGTCTGATATTATTCTGTTCGCAATCCCGATAGCTCCGCGACAAAGCCGCCCATCATGAAGGGAGCTATGATGACAGCAGCTGTGCTGCTTGGCACCGCCGAGGCCGGTGTCCACAAGCTCAAGATGAAGAAGATTCCCTTGGAGGACCAGCTTAAAACCTTCGACCTCAATGCACAGATGCGAGGTCTCGGCCAGAAGTACCTCGGCATCCGCCCTGAATCGCACCAGCATGCTGTCTTCAGCAATGATGCCGTTCAGGCCAGCGGGAACCACCCTGTGCCGATCAGCAACTTCATGAACGCGCAGTACTTCTCCGAGATCACCATCAGCACTCCTGCTCAGAATTTCAGGGCATCCTCGACACTGGAAGCTCTACGCTCTGGGTCCCTCATCGTCTTGGGGTCTATGGTAGTAATCTCACAACAAGTCGAATCGTCTGCTTATTGACTACATAAGAACGGACCGATTTAGAACCATTAGCTCCGCGCTTGAGGGTTGTTTCCACAGGTTTGACTTCGGAACTTGGACATACCTGGATGTCCAACTCTATGACCTGGTTGCTATGCTTTGCCATTAACGAATCTCGATGGTTTAAGGCTGTCGAATAAATGTCCGCCTTCCCTGGTGCCAACTATGTACACTGGACTTTACTCTGTGAAGATATCGGTTTATGGGTTATACTACTTAGAAACTTCTCTGTGGCGTTTAGGGCGATTTGTTGTGGGATGTTCCATAGAACTCTTGTTCGCTCTATGTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2214#0 GAATTCGGCACGAGTCCAGCAGCCACAACATCCCCTAATTCATTCAATACATCTGTGACC 60 consensus_2214#1 ----------------CAGCAGCCACAACATCCCCTAATTCATTCAATACATCTGTGACC 44 ******************************************** consensus_2214#0 CGAAGTTTTCCATCAGCTTTGGGTTCACAAATATTTCCTCTTCTCTTTTCATCTTAATCC 120 consensus_2214#1 CGAAGTTTTCCATCAGCTTTGGGTTCACAAATATTTCCTCTTCTCTTTTCATCTTAATCC 104 ************************************************************ consensus_2214#0 CATCCGTCTGATATTATTCTGTTCGCAATCCCGATAGCTCCGCGACAAAGCCGCCCATCA 180 consensus_2214#1 CATCCGTCTGATATTATTCTGTTCGCAATCCCGATAGCTCCGCGACAAAGCCGCCCATCA 164 ************************************************************ consensus_2214#0 TGAAGGGAGCTATGATGACAGCAGCTGTGCTGCTTGGCACCGCCGAGGCCGGTGTCCACA 240 consensus_2214#1 TGAAGGGAGCTATGATGACAGCAGCTGTGCTGCTTGGCACCGCCGAGGCCGGTGTCCACA 224 ************************************************************ consensus_2214#0 AGCTCAAGATGAAGAAGATTCCCTTGGAGGACCAGCTTAAAACCTTCGACCTCAATGCAC 300 consensus_2214#1 AGCTCAAGATGAAGAAGATTCCCTTGGAGGACCAGCTTAAAACCTTCGACCTCAATGCAC 284 ************************************************************ consensus_2214#0 AGATGCGAGGTCTCGGCCAGAAGTACCTCGGCATCCGCCCTGAATCGCACCAGCAGGCTG 360 consensus_2214#1 AGATGCGAGGTCTCGGCCAGAAGTACCTCGGCATCCGCCCTGAATCGCACCAGCATGCTG 344 ******************************************************* **** consensus_2214#0 TCTTCAGCAATGATGCCGTTCAGGCCAGCGGGAACCACCCTGTGCCGATCAGCAACTTCA 420 consensus_2214#1 TCTTCAGCAATGATGCCGTTCAGGCCAGCGGGAACCACCCTGTGCCGATCAGCAACTTCA 404 ************************************************************ consensus_2214#0 TGAACGCGCAGTACTTCTCTCAGATCACCATCGGCACTCCTCCCCAGAATTTCAAGGTCA 480 consensus_2214#1 TGAACGCGCAGTACTTCTCCGAGATCACCATCAGCACTCCTGCTCAGAATTTCAGGG-CA 463 ******************* *********** ******** * ********** ** ** consensus_2214#0 TCCTCGACACTGGAAGCTCTAAACCTCTGGTCCCTCATCGTCTNGCGGTCTATNCGCTGT 540 consensus_2214#1 TCCTCGACACTGGAAGCTCTACGCTCTGGGTCCCTCATCGTCTTGGGGTCTATGGTAGTA 523 ********************* * *************** * ******* consensus_2214#0 ATCTCACAACAAGTACGATCGCTT-CTCATC-ACTACAAGAAAACNGGACGAGTTAGA-T 597 consensus_2214#1 ATCTCACAACAAGTCGAATCGTCTGCTTATTGACTACATAAGAACGGACCGATTTAGAAC 583 ************** **** * ** ** ****** * *** * *** ***** consensus_2214#0 CATATGGTCNGCGCATGGAGGTGTCTTCNACATGTTTACCATCGAGACTCAGATCAGAAC 657 consensus_2214#1 CATTAGCTCCGCGCTTGAGGGTTGTTTCCACAGGTTTGACTTCGGAACTTGGAC--ATAC 641 *** * ** **** ** *** *** *** **** * *** *** ** ** consensus_2214#0 TTGCTTCTCGAACTCTAAAGACCTGGTGCTTTGCTTTGCGATTA-CGAAACCCGATG-TG 715 consensus_2214#1 CTGGATGTCCAACTCTATGACCTGGTTGCTATGCTTTGCCATTAACGAATCTCGATGGTT 701 ** * ** ******* * * **** ******** **** **** * ***** * consensus_2214#0 TAAAGCTGCGGAA-AAATGCCC-TCTATCCTGG-ACAAACTAT-TAAACTGTTCCTT-CT 770 consensus_2214#1 TAAGGCTGTCGAATAAATGTCCGCCTTCCCTGGTGCCAACTATGTACACTGGACTTTACT 761 *** **** *** ***** ** ** ***** * ****** ** **** * ** ** consensus_2214#0 CTTAAAAAAAACAGGAGTTTGGTTGGCCNCCGAAACAAACCCCCACGCGTGTGGGTTTGT 830 consensus_2214#1 CTGTGAAGATATCGGTTTATGGGTTATACTACTTAGAAACTTCTCTG--TGGCGTTTAGG 819 ** ** * * ** * *** * * **** * * ** * ** * consensus_2214#0 GTGTTTTCTTAAATGATACNCCTTCTCTTCACTTCTTCTANTCTTTTNTCTTCTGGAAGG 890 consensus_2214#1 GCGATTTGTTGTGGGATGTTCCATAGAACTCTTGTTCGCTCTATGTTAG----------- 868 * * *** ** *** ** * * * * * ** consensus_2214#0 AAGAAGAGATGATGAACATGCACTCCGATATGTTG 925 consensus_2214#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||