These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 899 fasta sequence [AGCCTGCAATCGCCTACTCACCTACTCACCTACTCACCTACTCATCAACTCACCAACTCGCAAGGTCTTCTCTACAGCCATCGAGCTTCATCATTAACTTTTGATCCACCCAACAACCAACCTCAAAAACCTCTATTCATCATGCAGCTCACTACCGTCCTTCCTCTGGCCTTGGTCGCCCTCTCCTCGGCCATGCCCGAGCCGACTCAGGCACCGGCCCTGGCCCAGGTTGAGCGTCGTCAACAGACCACCGCAACCCCCACCAACAGCGCTTTCAGCAGCGTGACGAGCCTCGCCTCGCTTCTCGGCCAATGCGGCTCGTCGCTCAGCTCCCTCCAGAGCAACTTCCCCGCCATCCCTACCGCCCTGAACCCCTACGTCGGCCTGGTCTTCCAGGACTCCAACTGCACCTTCACCATGGCCGAGTCGGTCAGCTCCGACTNTGTCAAGCTGTCGTCCGACGTGAGCGTGTGGGCCTCGACCAGCTGGAGCTCNGTCAAAGGCCGCAGCAGCACCTTGCTCGCCGTCTTGAGCACCCTCGGGCTTTAACCTCGACACCTCAACTTGTCGCCCAGCGTCGCTGTCGCTTGACCGGNGCNACCAGACCANGACCGAGAACTCAGGAGATTGCGTAACGAAGCACCGCCACTAACCACCAAACAACGNTGTGTGCGTGTAACGTGGACGTGGAAAAGCCTTGAACTTTGACTCCAACACCGAAGTGCGCTGCCAACACTCGGTTCTTTCTGGGCTGCGTTTGGTTCGTATGGATAAGAAACGTGGAGAATAATTACTTCACCGTGATGGAGAGGGGCAAATATCTTTTCTTCGCTGGGTTGCGTTTCTNNCNNNNNNAAAAATAAAAAAAAAAAAAAAAAAGCGCGCCCTCTCCTCCTATC] [+] EMBL AW155542 [AGCCTGCAATCGCCTACTCACCTACTCACCTACTCACCTACTCATCAACTCACCAACTCGCAAGGTCTTCTCTACAGCCATCGAGCTTCATCATTAACTTTTGATCCACCCAACAACCAACCTCAAAAACCTCTATTCATCATGCAGCTCACTACCGTCCTTCCTCTGGCCTTGGTCGCCCTCTCCTCGGCCATGCCCGAGCCGACTCAGGCACCGGCCCTGGCCCAGGTTGAGCGTCGTCAACAGACCACCGCAACCCCCACCAACAGCGCTTTCAGCAGCGTGACGAGCCTCGCCTCGCTTCTCGGCCAATGCGGCTCGTCGCTCAGCTCCCTCCAGAGCAACTTCCCCGCCATCCCTACCGCCCTGAACCCCTACGTCGGCCTGGTCTTCCAGGACTCCAACTGCACCTTCACCATGGCCGAGTCGGTCAGCTCCGACTNTGTCAAGCTGTCGTCCGACGTGAGCGTGTGGGCCTCGACCAGCTGGAGCTCNGTCAAAGGCCGCAGCAGCACCTTGCTCGCCGTCTTGAGCACCCTCGGGCTTTAACCTCGACACCTCAACTTGTCGCCCAGCGTCGCTGTCGCTTGACCGGNGCNACCAGACCANGACCGAGAACTCAGGAGATTGCGTAACGAAGCACCGCCACTAACCACCAAACAACGNTGTGTGCGTGTAACGTGGACGTGGAAAAGCCTTGAACTTTGACTCCAACACCGAAGTGCGCTGCCAACACTCGGTTCTTTCTGGGCTGCGTTTGGTTCGTATGGATAAGAAACGTGGAGAATAATTACTTCACCGTGATGGAGAGGGGCAAATATCTTTTCTTCGCTGGGTTGCGTTTCTNNCNNNNNNAAAAATAAAAAAAAAAAAAAAAAAGCGCGCCCTCTCCTCCTATC] consensusID : consensus_2224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [AGCCTGCAATCGCCTACTCACCTACTCACCTACTCACCTACTCATCAACTCACCAACTCGCAAGGTCTTCTCTACAGCCATCGAGCTTCATCATTAACTTTTGATCCACCCAACAACCAACCTCAAAAACCTCTATTCATCATGCAGCTCACTACCGTCCTTCCTCTGGCCTTGGTCGCCCTCTCCTCGGCCATGCCCGAGCCGACTCAGGCACCGGCCCTGGCCCAGGTTGAGCGTCGTCAACAGACCACCGCAACCCCCACCAACAGCGCTTTCAGCAGCGTGACGAGCCTCGCCTCGCTTCTCGGCCAATGCGGCTCGTCGCTCAGCTCCCTCCAGAGCAACTTCCCCGCCATCCCTACCGCCCTGAACCCCTACGTCGGCCTGGTCTTCCAGGACTCCAACTGCACCTTCACCATGGCCGAGTCGGTCAGCTCCGACTTTGTCAAGCTGTCGTTCCACATGAGCGCGTGGGGCTCTAACAACTCTGGAGCTCGGCAAGGCCCCCAGCAACACCTGCTCGCCCGTCTTGAGCACCNCTGGCTTAACCTTGAAACCTAACTGCTTCCCAGCTGTGTGCTTCTGACCGGCGCAACCAACCAGACCGAGACTTCGATGATGCGTCACGAGCC] [+] EMBL AW155368 [AGCCTGCAATCGCCTACTCACCTACTCACCTACTCACCTACTCATCAACTCACCAACTCGCAAGGTCTTCTCTACAGCCATCGAGCTTCATCATTAACTTTTGATCCACCCAACAACCAACCTCAAAAACCTCTATTCATCATGCAGCTCACTACCGTCCTTCCTCTGGCCTTGGTCGCCCTCTCCTCGGCCATGCCCGAGCCGACTCAGGCACCGGCCCTGGCCCAGGTTGAGCGTCGTCAACAGACCACCGCAACCCCCACCAACAGCGCTTTCAGCAGCGTGACGAGCCTCGCCTCGCTTCTCGGCCAATGCGGCTCGTCGCTCAGCTCCCTCCAGAGCAACTTCCCCGCCATCCCTACCGCCCTGAACCCCTACGTCGGCCTGGTCTTCCAGGACTCCAACTGCACCTTCACCATGGCCGAGTCGGTCAGCTCCGACTTTGTCAAGCTGTCGTTCCACATGAGCGCGTGGGGCTCTAACAACTCTGGAGCTCGGCAAGGCCCCCAGCAACACCTGCTCGCCCGTCTTGAGCACCNCTGGCTTAACCTTGAAACCTAACTGCTTCCCAGCTGTGTGCTTCTGACCGGCGCAACCAACCAGACCGAGACTTCGATGATGCGTCACGAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2224#0 AGCCTGCAATCGCCTACTCACCTACTCACCTACTCACCTACTCATCAACTCACCAACTCG 60 consensus_2224#1 AGCCTGCAATCGCCTACTCACCTACTCACCTACTCACCTACTCATCAACTCACCAACTCG 60 ************************************************************ consensus_2224#0 CAAGGTCTTCTCTACAGCCATCGAGCTTCATCATTAACTTTTGATCCACCCAACAACCAA 120 consensus_2224#1 CAAGGTCTTCTCTACAGCCATCGAGCTTCATCATTAACTTTTGATCCACCCAACAACCAA 120 ************************************************************ consensus_2224#0 CCTCAAAAACCTCTATTCATCATGCAGCTCACTACCGTCCTTCCTCTGGCCTTGGTCGCC 180 consensus_2224#1 CCTCAAAAACCTCTATTCATCATGCAGCTCACTACCGTCCTTCCTCTGGCCTTGGTCGCC 180 ************************************************************ consensus_2224#0 CTCTCCTCGGCCATGCCCGAGCCGACTCAGGCACCGGCCCTGGCCCAGGTTGAGCGTCGT 240 consensus_2224#1 CTCTCCTCGGCCATGCCCGAGCCGACTCAGGCACCGGCCCTGGCCCAGGTTGAGCGTCGT 240 ************************************************************ consensus_2224#0 CAACAGACCACCGCAACCCCCACCAACAGCGCTTTCAGCAGCGTGACGAGCCTCGCCTCG 300 consensus_2224#1 CAACAGACCACCGCAACCCCCACCAACAGCGCTTTCAGCAGCGTGACGAGCCTCGCCTCG 300 ************************************************************ consensus_2224#0 CTTCTCGGCCAATGCGGCTCGTCGCTCAGCTCCCTCCAGAGCAACTTCCCCGCCATCCCT 360 consensus_2224#1 CTTCTCGGCCAATGCGGCTCGTCGCTCAGCTCCCTCCAGAGCAACTTCCCCGCCATCCCT 360 ************************************************************ consensus_2224#0 ACCGCCCTGAACCCCTACGTCGGCCTGGTCTTCCAGGACTCCAACTGCACCTTCACCATG 420 consensus_2224#1 ACCGCCCTGAACCCCTACGTCGGCCTGGTCTTCCAGGACTCCAACTGCACCTTCACCATG 420 ************************************************************ consensus_2224#0 GCCGAGTCGGTCAGCTCCGACTNTGTCAAGCTGTCGTCCGACGTGAGCGTGTGGGCCTCG 480 consensus_2224#1 GCCGAGTCGGTCAGCTCCGACTTTGTCAAGCTGTCGTTCCACATGAGCGCGTGGGGCTCT 480 ********************** ************** * ** ****** ***** *** consensus_2224#0 ACCAGCT--GGAGCTCNGTCAAAGGCCGCAGCAGCACCTTGCTCGCC-GTCTTGAGCACC 537 consensus_2224#1 AACAACTCTGGAGCTCGG-CAAGGCCCCCAGCAACACCT-GCTCGCCCGTCTTGAGCACC 538 * ** ** ******* * *** * ** ***** ***** ******* ************ consensus_2224#0 CTCGGGCTTTAACCTCGACACCTCAACTTGTCGCCCAGCGTCGCTGTCGCTTGACCGGNG 597 consensus_2224#1 NCTGG--CTTAACCTTGAAACCTAA--CTGCTTCCCAGCTGTGTGCTT--CTGACCGGCG 592 ** ******* ** **** * ** ****** * * ******* * consensus_2224#0 CNACCAGACCANGACCGAGAACTCAGGAGATTGCGTAACGAAGCACCGCCACTAACCACC 657 consensus_2224#1 CAACCAACC--AGACCGAGACTTC--GATGATGCGTCACGAGCC---------------- 632 * **** * ******** ** ** ***** **** * consensus_2224#0 AAACAACGNTGTGTGCGTGTAACGTGGACGTGGAAAAGCCTTGAACTTTGACTCCAACAC 717 consensus_2224#1 ------------------------------------------------------------ consensus_2224#0 CGAAGTGCGCTGCCAACACTCGGTTCTTTCTGGGCTGCGTTTGGTTCGTATGGATAAGAA 777 consensus_2224#1 ------------------------------------------------------------ consensus_2224#0 ACGTGGAGAATAATTACTTCACCGTGATGGAGAGGGGCAAATATCTTTTCTTCGCTGGGT 837 consensus_2224#1 ------------------------------------------------------------ consensus_2224#0 TGCGTTTCTNNCNNNNNNAAAAATAAAAAAAAAAAAAAAAAAGCGCGCCCTCTCCTCCTA 897 consensus_2224#1 ------------------------------------------------------------ consensus_2224#0 TC 899 consensus_2224#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||