These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [TCCCAAACTCCCGCCGCCGCCGCCGCCATCGATGGAGTCCGCCCCGGCCAGCCGCGTACGCCGCGAGGACGTGGCCCGCGCGGTGGCGGCGCTCCTCCGGTGGCTCCAGCACCACCCCACCCCGGCGCCGGAGCCCATCTACCTCCTCGTCACCCTCAAGCGCGCCCCCGCCCGCCGCTTCGAGCACACCCTCCGCCTCCCGCGCTCGCCGTTCCCGTCCATCTCCCTCGTCTCCGACCGCCTCCCGGCGGACCTGCCCGACGGCGGCAACGGCGAGGCGGAAGACGCGAAGAGGAAGAGCGTGGCGGTGAAGGAGCAGGGGATTGTGAAGAGGAGGAAGAAGAGTAGCAGCGTCAGTGTGGGCGGTGATCAGTTGTAAACCTGTACTAAAATACTTCAGTGTTGAATTCGAATTCGAATTCTGTCTTTCCCTTGCATTTCGATGCTTAATTGATCGCCAAGAACAATTCAATGAACGAT] [+] EMBL AK105358 [TCCCAAACTCCCGCCGCCGCCGCCGCCATCGATGGAGTCCGCCCCGGCCAGCCGCGTACGCCGCGAGGACGTGGCCCGCGCGGTGGCGGCGCTCCTCCGGTGGCTCCAGCACCACCCCACCCCGGCGCCGGAGCCCATCTACCTCCTCGTCACCCTCAAGCGCGCCCCCGCCCGCCGCTTCGAGCACACCCTCCGCCTCCCGCGCTCGCCGTTCCCGTCCATCTCCCTCGTCTCCGACCGCCTCCCGGCGGACCTGCCCGACGGCGGCAACGGCGAGGCGGAAGACGCGAAGAGGAAGAGCGTGGCGGTGAAGGAGCAGGGGATTGTGAAGAGGAGGAAGAAGAGTAGCAGCGTCAGTGTGGGCGGTGATCAGTTGTAAACCTGTACTAAAATACTTCAGTGTTGAATTCGAATTCGAATTCTGTCTTTCCCTTGCATTTCGATGCTTAATTGATCGCCAAGAACAATTCAATGAACGAT] consensusID : consensus_2268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 143 fasta sequence [CCCCGCCGCCGCTTCGAGCACACCCTCCTCCTCCCGCGCTCGCCGTTCCCGTCCATCTCCCTCGTCTCCGACCGCCTCCCNNCCTGCCCGACGACATCGATCCGTCCCCTCGCCCNNTGGTGTCCCGCCGNNNNNTGTGTGTG] [+] EMBL AA749882 [CCCCGCCGCCGCTTCGAGCACACCCTCCTCCTCCCGCGCTCGCCGTTCCCGTCCATCTCCCTCGTCTCCGACCGCCTCCCNNCCTGCCCGACGACATCGATCCGTCCCCTCGCCCNNTGGTGTCCCGCCGNNNNNTGTGTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2268#0 TCCCAAACTCCCGCCGCCGCCGCCGCCATCGATGGAGTCCGCCCCGGCCAGCCGCGTACG 60 consensus_2268#1 ------------------------------------------------------------ consensus_2268#0 CCGCGAGGACGTGGCCCGCGCGGTGGCGGCGCTCCTCCGGTGGCTCCAGCACCACCCCAC 120 consensus_2268#1 ------------------------------------------------------------ consensus_2268#0 CCCGGCGCCGGAGCCCATCTACCTCCTCGTCACCCTCAAGCGCGCCCCCGCCCGCCGCTT 180 consensus_2268#1 ---------------------------------------------CCCCGCC-GCCGCTT 14 ******* ******* consensus_2268#0 CGAGCACACCCTCCGCCTCCCGCGCTCGCCGTTCCCGTCCATCTCCCTCGTCTCCGACCG 240 consensus_2268#1 CGAGCACACCCTCCTCCTCCCGCGCTCGCCGTTCCCGTCCATCTCCCTCGTCTCCGACCG 74 ************** ********************************************* consensus_2268#0 CCTCCCGGCGGACCTGCCCGACGGCGGCAACGGCGAGGCGGAAGACGCGAAGAGGAAGAG 300 consensus_2268#1 CCTCCCN----NCCTGCCCGACG---ACATCGATCCGTCCCCTCGCCCNNTGGTGTCCCG 127 ****** *********** ** ** * * * * * * * consensus_2268#0 CGTGGCGGTGAAGGAGCAGGGGATTGTGAAGAGGAGGAAGAAGAGTAGCAGCGTCAGTGT 360 consensus_2268#1 CCGNNNNNTGTGTGTG-------------------------------------------- 143 * ** * * consensus_2268#0 GGGCGGTGATCAGTTGTAAACCTGTACTAAAATACTTCAGTGTTGAATTCGAATTCGAAT 420 consensus_2268#1 ------------------------------------------------------------ consensus_2268#0 TCTGTCTTTCCCTTGCATTTCGATGCTTAATTGATCGCCAAGAACAATTCAATGAACGAT 480 consensus_2268#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||