These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1976 fasta sequence [ATTGTTTTGTTGGGTCGGCGGCGGCGGGTGAGAGTGGAGAATGATGATGGCTCTCCGCCGCGCCGTCGGAATTGGCTCCGCCGCCGCCCTCCGCTCTGCCGCCTACCTCCGCCGCGCCTCCCCCTCGCCGGCGCGGCCCCATCCCCTCGTCCCTCCACCGCCTGCCGCCCGAACCTTCGCCGCCCCGCCCCAGGTGATGAAGAGGAGCACCAAGGACGACGACGACGATGGCCCTCGGATCAACAACGACATCACCTCTCCCTTTGTTCGACTCGTCACTGACCAAGGCCATAGTGTTGTCCCCAGGCACGAAGCTCTTCAGCTTGCGGCCAGGATGGACTTGGACTTGGTCGAGGTCCACAGAAAATCAGACCCTCCTGTCTGTAAAATCATGGATTTTCACAAAGAGAAGTATAAGAAAGACGTTAAGGAGAAAGAACGCCTAAAAACTAAGTCTGCTATTGTCTTACGCGGTGGGGAGAACAAAGAAGTGCGGTTTAAGGGTAAAACAGAACTAAAAGACTTGAAGGTGAAAGCAGATGGAATCACCAGATTAATGGAGCGAGGTTACAGGGTGAAGTGCATGGCGATGCCCTCAGGTAATGAAGAAGAAGATTTAGGAGGGCCACTATCTCGGTTGTTAGGACTTATACAAGATGTCTGCATAGTGGAAAGTGGCCCACATTTGGACTCGAAGCATGCATACGTTATTGTTAGGCATGTGAAGTTTGCAACAAAGAAAGCTGGAAAGAAAGCTAGCAAGGCCATAGAAGATGTAGGCAAAGGTGCCCGCAAGAATGCCTCTGAATTGTCAACTGTTACTGCCGATAGTGGAGATGAGACAAATGATTGTGGAAATGGGGCCATCTCAGATCAAATGGACAACGCTCCTGCTTACGTCTCCAATGAATTTTCCATGCAGAAAGATGCACATGATAGAGGCTCTAGAAGGGAGTTGAGTTGGTCGAAATCGAACCCGGGCAACTACGGTGAAAACATGCAAAATGTTGATGCTGGGGCACACAGAATTAGCTCTAGTCAGCGGGCAGCACAAACCTCAGAGGGTGGGTTTGGTTCCAATAATGTAAAATCTGGTATGGAAAAGCAAGAAAAGGCTAATGAAGATGTGGTACCTGCAGAAACCAACAGATACGCCAGCCGAAGACAGCAGATAAGAGGAGATAACCAGGGTTTGAGCCAAGATAGATCCCCGCAAGGTCATAGAAGGAATGAAAATGAAGTTCGCTATCCGGTCAATGACTACCAAAGACCTCTGCAGCAGAACAACCGACAATCACCAAGGTTCAACGATGGTAGATTACCACAAGAACCAAGAAGAAATGAAAGGGGAGGCCATATTCCGTTGAATAACAAACAAGGCCAATTTCAGCAAATGAATCATCCTGCTGAATCAGCGGGTAATGGTGCAGGCTATCCTACTCCGACGGCCAAGAGTTTTGGAGTTTTCAGTACCAGAAAACCTGCTACGTCTGAGTTGGGGAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTACCTAAAAGCTATGGAATCTTTAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGAATGAAACTATCAGCAGATAAGCCTATAAACAGCAGGTCTACATCAAAGTTTGTCGTATTTGGAATTGGCACAATAAGCCTCGAAATGTAAGGATCAGCATGTGGGTCTCATGTTTCAGTTTTTGTTGATCATTGACTATTATTCATTCAGCCTGAGCATATCTACGTGGCGGTGGCACGGTGAGAAAGCCAACTGCAAGCTTGAGAGGTACTGTACTACTCCTATTTGTTAAGTAGCTTTTGGGTCCACTTGTATTGTTATCATTTGATTGGAAGAATCACACCTGTTTAGACTAGAATAGCCCTTTTACTTGTCAGGTTGATCGAATAGTGAAAAATAATGTCATGAGTGGTCGGATCCATTTGATTGTGATAGC] [+] EMBL AK068038 [ATTGTTTTGTTGGGTCGGCGGCGGCGGGTGAGAGTGGAGAATGATGATGGCTCTCCGCCGCGCCGTCGGAATTGGCTCCGCCGCCGCCCTCCGCTCTGCCGCCTACCTCCGCCGCGCCTCCCCCTCGCCGGCGCGGCCCCATCCCCTCGTCCCTCCACCGCCTGCCGCCCGAACCTTCGCCGCCCCGCCCCAGGTGATGAAGAGGAGCACCAAGGACGACGACGACGATGGCCCTCGGATCAACAACGACATCACCTCTCCCTTTGTTCGACTCGTCACTGACCAAGGCCATAGTGTTGTCCCCAGGCACGAAGCTCTTCAGCTTGCGGCCAGGATGGACTTGGACTTGGTCGAGGTCCACAGAAAATCAGACCCTCCTGTCTGTAAAATCATGGATTTTCACAAAGAGAAGTATAAGAAAGACGTTAAGGAGAAAGAACGCCTAAAAACTAAGTCTGCTATTGTCTTACGCGGTGGGGAGAACAAAGAAGTGCGGTTTAAGGGTAAAACAGAACTAAAAGACTTGAAGGTGAAAGCAGATGGAATCACCAGATTAATGGAGCGAGGTTACAGGGTGAAGTGCATGGCGATGCCCTCAGGTAATGAAGAAGAAGATTTAGGAGGGCCACTATCTCGGTTGTTAGGACTTATACAAGATGTCTGCATAGTGGAAAGTGGCCCACATTTGGACTCGAAGCATGCATACGTTATTGTTAGGCATGTGAAGTTTGCAACAAAGAAAGCTGGAAAGAAAGCTAGCAAGGCCATAGAAGATGTAGGCAAAGGTGCCCGCAAGAATGCCTCTGAATTGTCAACTGTTACTGCCGATAGTGGAGATGAGACAAATGATTGTGGAAATGGGGCCATCTCAGATCAAATGGACAACGCTCCTGCTTACGTCTCCAATGAATTTTCCATGCAGAAAGATGCACATGATAGAGGCTCTAGAAGGGAGTTGAGTTGGTCGAAATCGAACCCGGGCAACTACGGTGAAAACATGCAAAATGTTGATGCTGGGGCACACAGAATTAGCTCTAGTCAGCGGGCAGCACAAACCTCAGAGGGTGGGTTTGGTTCCAATAATGTAAAATCTGGTATGGAAAAGCAAGAAAAGGCTAATGAAGATGTGGTACCTGCAGAAACCAACAGATACGCCAGCCGAAGACAGCAGATAAGAGGAGATAACCAGGGTTTGAGCCAAGATAGATCCCCGCAAGGTCATAGAAGGAATGAAAATGAAGTTCGCTATCCGGTCAATGACTACCAAAGACCTCTGCAGCAGAACAACCGACAATCACCAAGGTTCAACGATGGTAGATTACCACAAGAACCAAGAAGAAATGAAAGGGGAGGCCATATTCCGTTGAATAACAAACAAGGCCAATTTCAGCAAATGAATCATCCTGCTGAATCAGCGGGTAATGGTGCAGGCTATCCTACTCCGACGGCCAAGAGTTTTGGAGTTTTCAGTACCAGAAAACCTGCTACGTCTGAGTTGGGGAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTACCTAAAAGCTATGGAATCTTTAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGAATGAAACTATCAGCAGATAAGCCTATAAACAGCAGGTCTACATCAAAGTTTGTCGTATTTGGAATTGGCACAATAAGCCTCGAAATGTAAGGATCAGCATGTGGGTCTCATGTTTCAGTTTTTGTTGATCATTGACTATTATTCATTCAGCCTGAGCATATCTACGTGGCGGTGGCACGGTGAGAAAGCCAACTGCAAGCTTGAGAGGTACTGTACTACTCCTATTTGTTAAGTAGCTTTTGGGTCCACTTGTATTGTTATCATTTGATTGGAAGAATCACACCTGTTTAGACTAGAATAGCCCTTTTACTTGTCAGGTTGATCGAATAGTGAAAAATAATGTCATGAGTGGTCGGATCCATTTGATTGTGATAGC] consensusID : consensus_2278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [GAAGGAATGAAAATGAAGTTCGCTATCCGGTCAATGACTACCAAAGACCTTTGCAGCAGAACAACCGACAATCACCAAGGTTCAACGATGGTAGATTNCCCCAAGAACCAAGAAGAAATGAAAGGGGAGGCCATATTCCGTTGAATAACAAACAAGGCCAATTTCAGCAAATGAATCATCCTGCTGAATCAGCGGGTAATGGTGCAGGCTATCCTACTCCGACGGCCAAGAGTTTTGGAGTTTTCAGTACCAGAAAACCTGCTACGTTTGAGTTGGGGAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTACCTAAAAGCTATGGAATCTTTAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGAATGAAACTATCAGCAGATAAGCCTATAAACAGCAGGTTTACATCAAAGTTTGTCGTATTTGGAATTGGCACAATAAGCCTCGAAATGTAAGGATCAGCATGTGGGTCTCATGTTTCAGTTTTTGTTGATCATTGACTATTATTCATTCAGCCTGAGCATATTTACGTGGCGGTGGCACGGTGAGAAAGCCAACTGCAAGCTTGAGAGGTACTGTACTACTCCTATTTGTTAAGTAGCTTTTGGGTCCACTTGTATTGTTATCATTTGATTGGAAGAATCACACCTGTTTAGGCTAGAAAAAAAAAAAAA] [-] EMBL CA761954 [GAAGGAATGAAAATGAAGTTCGCTATCCGGTCAATGACTACCAAAGACCTTTGCAGCAGAACAACCGACAATCACCAAGGTTCAACGATGGTAGATTNCCCCAAGAACCAAGAAGAAATGAAAGGGGAGGCCATATTCCGTTGAATAACAAACAAGGCCAATTTCAGCAAATGAATCATCCTGCTGAATCAGCGGGTAATGGTGCAGGCTATCCTACTCCGACGGCCAAGAGTTTTGGAGTTTTCAGTACCAGAAAACCTGCTACGTTTGAGTTGGGGAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTACCTAAAAGCTATGGAATCTTTAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGAATGAAACTATCAGCAGATAAGCCTATAAACAGCAGGTTTACATCAAAGTTTGTCGTATTTGGAATTGGCACAATAAGCCTCGAAATGTAAGGATCAGCATGTGGGTCTCATGTTTCAGTTTTTGTTGATCATTGACTATTATTCATTCAGCCTGAGCATATTTACGTGGCGGTGGCACGGTGAGAAAGCCAACTGCAAGCTTGAGAGGTACTGTACTACTCCTATTTGTTAAGTAGCTTTTGGGTCCACTTGTATTGTTATCATTTGATTGGAAGAATCACACCTGTTTAGGCTAGAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2278#0 ATTGTTTTGTTGGGTCGGCGGCGGCGGGTGAGAGTGGAGAATGATGATGGCTCTCCGCCG 60 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 CGCCGTCGGAATTGGCTCCGCCGCCGCCCTCCGCTCTGCCGCCTACCTCCGCCGCGCCTC 120 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 CCCCTCGCCGGCGCGGCCCCATCCCCTCGTCCCTCCACCGCCTGCCGCCCGAACCTTCGC 180 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 CGCCCCGCCCCAGGTGATGAAGAGGAGCACCAAGGACGACGACGACGATGGCCCTCGGAT 240 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 CAACAACGACATCACCTCTCCCTTTGTTCGACTCGTCACTGACCAAGGCCATAGTGTTGT 300 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 CCCCAGGCACGAAGCTCTTCAGCTTGCGGCCAGGATGGACTTGGACTTGGTCGAGGTCCA 360 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 CAGAAAATCAGACCCTCCTGTCTGTAAAATCATGGATTTTCACAAAGAGAAGTATAAGAA 420 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 AGACGTTAAGGAGAAAGAACGCCTAAAAACTAAGTCTGCTATTGTCTTACGCGGTGGGGA 480 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 GAACAAAGAAGTGCGGTTTAAGGGTAAAACAGAACTAAAAGACTTGAAGGTGAAAGCAGA 540 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 TGGAATCACCAGATTAATGGAGCGAGGTTACAGGGTGAAGTGCATGGCGATGCCCTCAGG 600 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 TAATGAAGAAGAAGATTTAGGAGGGCCACTATCTCGGTTGTTAGGACTTATACAAGATGT 660 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 CTGCATAGTGGAAAGTGGCCCACATTTGGACTCGAAGCATGCATACGTTATTGTTAGGCA 720 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 TGTGAAGTTTGCAACAAAGAAAGCTGGAAAGAAAGCTAGCAAGGCCATAGAAGATGTAGG 780 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 CAAAGGTGCCCGCAAGAATGCCTCTGAATTGTCAACTGTTACTGCCGATAGTGGAGATGA 840 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 GACAAATGATTGTGGAAATGGGGCCATCTCAGATCAAATGGACAACGCTCCTGCTTACGT 900 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 CTCCAATGAATTTTCCATGCAGAAAGATGCACATGATAGAGGCTCTAGAAGGGAGTTGAG 960 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 TTGGTCGAAATCGAACCCGGGCAACTACGGTGAAAACATGCAAAATGTTGATGCTGGGGC 1020 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 ACACAGAATTAGCTCTAGTCAGCGGGCAGCACAAACCTCAGAGGGTGGGTTTGGTTCCAA 1080 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 TAATGTAAAATCTGGTATGGAAAAGCAAGAAAAGGCTAATGAAGATGTGGTACCTGCAGA 1140 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 AACCAACAGATACGCCAGCCGAAGACAGCAGATAAGAGGAGATAACCAGGGTTTGAGCCA 1200 consensus_2278#1 ------------------------------------------------------------ consensus_2278#0 AGATAGATCCCCGCAAGGTCATAGAAGGAATGAAAATGAAGTTCGCTATCCGGTCAATGA 1260 consensus_2278#1 -----------------------GAAGGAATGAAAATGAAGTTCGCTATCCGGTCAATGA 37 ************************************* consensus_2278#0 CTACCAAAGACCTCTGCAGCAGAACAACCGACAATCACCAAGGTTCAACGATGGTAGATT 1320 consensus_2278#1 CTACCAAAGACCTTTGCAGCAGAACAACCGACAATCACCAAGGTTCAACGATGGTAGATT 97 ************* ********************************************** consensus_2278#0 ACCACAAGAACCAAGAAGAAATGAAAGGGGAGGCCATATTCCGTTGAATAACAAACAAGG 1380 consensus_2278#1 NCCCCAAGAACCAAGAAGAAATGAAAGGGGAGGCCATATTCCGTTGAATAACAAACAAGG 157 ** ******************************************************** consensus_2278#0 CCAATTTCAGCAAATGAATCATCCTGCTGAATCAGCGGGTAATGGTGCAGGCTATCCTAC 1440 consensus_2278#1 CCAATTTCAGCAAATGAATCATCCTGCTGAATCAGCGGGTAATGGTGCAGGCTATCCTAC 217 ************************************************************ consensus_2278#0 TCCGACGGCCAAGAGTTTTGGAGTTTTCAGTACCAGAAAACCTGCTACGTCTGAGTTGGG 1500 consensus_2278#1 TCCGACGGCCAAGAGTTTTGGAGTTTTCAGTACCAGAAAACCTGCTACGTTTGAGTTGGG 277 ************************************************** ********* consensus_2278#0 GAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTACCTAAAAGCTATGGAATCTT 1560 consensus_2278#1 GAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTACCTAAAAGCTATGGAATCTT 337 ************************************************************ consensus_2278#0 TAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGAATGAAACTATCAGCAGATAA 1620 consensus_2278#1 TAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGAATGAAACTATCAGCAGATAA 397 ************************************************************ consensus_2278#0 GCCTATAAACAGCAGGTCTACATCAAAGTTTGTCGTATTTGGAATTGGCACAATAAGCCT 1680 consensus_2278#1 GCCTATAAACAGCAGGTTTACATCAAAGTTTGTCGTATTTGGAATTGGCACAATAAGCCT 457 ***************** ****************************************** consensus_2278#0 CGAAATGTAAGGATCAGCATGTGGGTCTCATGTTTCAGTTTTTGTTGATCATTGACTATT 1740 consensus_2278#1 CGAAATGTAAGGATCAGCATGTGGGTCTCATGTTTCAGTTTTTGTTGATCATTGACTATT 517 ************************************************************ consensus_2278#0 ATTCATTCAGCCTGAGCATATCTACGTGGCGGTGGCACGGTGAGAAAGCCAACTGCAAGC 1800 consensus_2278#1 ATTCATTCAGCCTGAGCATATTTACGTGGCGGTGGCACGGTGAGAAAGCCAACTGCAAGC 577 ********************* ************************************** consensus_2278#0 TTGAGAGGTACTGTACTACTCCTATTTGTTAAGTAGCTTTTGGGTCCACTTGTATTGTTA 1860 consensus_2278#1 TTGAGAGGTACTGTACTACTCCTATTTGTTAAGTAGCTTTTGGGTCCACTTGTATTGTTA 637 ************************************************************ consensus_2278#0 TCATTTGATTGGAAGAATCACACCTGTTTAGACTAGAATAGCCCTTTTACTTGTCAGGTT 1920 consensus_2278#1 TCATTTGATTGGAAGAATCACACCTGTTTAGGCTAGAAAAAAAAAAAAA----------- 686 ******************************* ****** * * consensus_2278#0 GATCGAATAGTGAAAAATAATGTCATGAGTGGTCGGATCCATTTGATTGTGATAGC 1976 consensus_2278#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||