These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1851 fasta sequence [CTCTTCCTCCTCCGTCTCTGCATCTCACAGGGCAGGAGCAGCGTTGAACTAACCGGCGGCGAGAGATGGCGGCGGGAGCAGGGGCATATAGGTCCCGAACCCTAGATCGGAAACCCGACAGCGGCCCAGATCGGCGATGGGTGGCGGGAGGACCGGGATAGCTGCAAGCTGCGTCGGGAGCTTGATGATGGTTGCGGCGACGATTCATCGGCGACGACGGCCGCGGCGATGGTTGCGGCGGTGATTTGTCGGAAGCTCGATGTGACGGTGGCCGCGGCGAACTTGATGCGACGCCGGCACGGGGATGCGGCAAAGAGAAGAGAGGGGAAGAGGGTAAGGCCGGCGATGGTTGCAACGGCCATTCATCGGGAGCTTGACGATGGTTACGGCGGCGATTCGTCGGAAGCTCGACGCGATGGCTGCCGCAGCGGACTCGATGCGACGCGGCGGCGGCCGCGGCGGACTCGATGCGATGCAACGGCGGCAGCAGCGGACTCGATGCGACGCGACGGTGGCCGCGGCGGACTCGATGCGACGTGACGGCGGCAGCGGCGGACTCGATGCGACGCGACGGCGGCAGCGGCGGACTCGCTGGCACGGAGATGTGGCAAAGCTTTGGAGAATACGAGAGATTCATTCATTCATGGCACGTCGCCGACGAGTATCTTGTCGCCCTCGTCGTCACGAGCGTGTACTCGCCGGACGCCGCTGCCGCTGTCGAGGAGCCCGGCAATCGCCTCCTCGCCTCCTCCCGTGCAGCTCTTGCCGCCGGCGGCGGCGGACATGGTTGGGTCCCTTTGAGCCACCACGAGCAAGCAAGCAAAACGCCATCAAGAGGGTGAGGGATTAGCGCCACCCTAAATTTGTTTAGCCCGATCATACCCCTCCTAAATCAACGGTTAGATTAAATTGGTACCTCATGGTACCTCGTACCTCATAGTACCTCGTATCTCATGGTACCTCGTAGTACCTCCTCAAGGATGGGAAAGATGCTCTTAGACTTTAGTTAGCTTGTACCCAATCCAGTTGCGTAAAATTTGTGTGAGAAGCCCTGGTGTTAATTCCTCTAAGCTTTACACTGTGCTACACTACATATGCATTCCTTGAATACAAAAATAGTCTCCTATAGCAAGGCTTAGATGTTGAATTCTAAGTCCCTAATTGTGACCGTCATCTTTCACCCTGACAGCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGGTTTGGACTTCTAATCTCCTACAAACTTAAAGCATCTCATTAATTTGCCTTTATAAGCTAAGAATAATCTTGTGTTATCTTCTCTTTGCAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGGTGAGCCTTCAATGAACGCAGCAAGTATATTTAGCTGATCTTATCTTTGTTTGTTGTCTCCTTATCTACATATACCTTTACTGTGCGGTTATGTGTAAGATTTCTGTTGATCATGGCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGGTGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAAATTATGGCTGTGTTTAGTTCAGCGCAAAATTTAGATTTTGGTTGAAATTGAAGAT] [+] EMBL AK106122 [CTCTTCCTCCTCCGTCTCTGCATCTCACAGGGCAGGAGCAGCGTTGAACTAACCGGCGGCGAGAGATGGCGGCGGGAGCAGGGGCATATAGGTCCCGAACCCTAGATCGGAAACCCGACAGCGGCCCAGATCGGCGATGGGTGGCGGGAGGACCGGGATAGCTGCAAGCTGCGTCGGGAGCTTGATGATGGTTGCGGCGACGATTCATCGGCGACGACGGCCGCGGCGATGGTTGCGGCGGTGATTTGTCGGAAGCTCGATGTGACGGTGGCCGCGGCGAACTTGATGCGACGCCGGCACGGGGATGCGGCAAAGAGAAGAGAGGGGAAGAGGGTAAGGCCGGCGATGGTTGCAACGGCCATTCATCGGGAGCTTGACGATGGTTACGGCGGCGATTCGTCGGAAGCTCGACGCGATGGCTGCCGCAGCGGACTCGATGCGACGCGGCGGCGGCCGCGGCGGACTCGATGCGATGCAACGGCGGCAGCAGCGGACTCGATGCGACGCGACGGTGGCCGCGGCGGACTCGATGCGACGTGACGGCGGCAGCGGCGGACTCGATGCGACGCGACGGCGGCAGCGGCGGACTCGCTGGCACGGAGATGTGGCAAAGCTTTGGAGAATACGAGAGATTCATTCATTCATGGCACGTCGCCGACGAGTATCTTGTCGCCCTCGTCGTCACGAGCGTGTACTCGCCGGACGCCGCTGCCGCTGTCGAGGAGCCCGGCAATCGCCTCCTCGCCTCCTCCCGTGCAGCTCTTGCCGCCGGCGGCGGCGGACATGGTTGGGTCCCTTTGAGCCACCACGAGCAAGCAAGCAAAACGCCATCAAGAGGGTGAGGGATTAGCGCCACCCTAAATTTGTTTAGCCCGATCATACCCCTCCTAAATCAACGGTTAGATTAAATTGGTACCTCATGGTACCTCGTACCTCATAGTACCTCGTATCTCATGGTACCTCGTAGTACCTCCTCAAGGATGGGAAAGATGCTCTTAGACTTTAGTTAGCTTGTACCCAATCCAGTTGCGTAAAATTTGTGTGAGAAGCCCTGGTGTTAATTCCTCTAAGCTTTACACTGTGCTACACTACATATGCATTCCTTGAATACAAAAATAGTCTCCTATAGCAAGGCTTAGATGTTGAATTCTAAGTCCCTAATTGTGACCGTCATCTTTCACCCTGACAGCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGGTTTGGACTTCTAATCTCCTACAAACTTAAAGCATCTCATTAATTTGCCTTTATAAGCTAAGAATAATCTTGTGTTATCTTCTCTTTGCAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGGTGAGCCTTCAATGAACGCAGCAAGTATATTTAGCTGATCTTATCTTTGTTTGTTGTCTCCTTATCTACATATACCTTTACTGTGCGGTTATGTGTAAGATTTCTGTTGATCATGGCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGGTGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAAATTATGGCTGTGTTTAGTTCAGCGCAAAATTTAGATTTTGGTTGAAATTGAAGAT] consensusID : consensus_232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 985 fasta sequence [TCCGGACCCAAGCCCCGCTCGAGCGAGCGCGATGGCCTCGGCGAGGGACCTCGCCGTAGCGTCCATCTCCGCCGCCGTGGGCGCCGCAGCCGCCGCGGCCGCGCTGCGCTTCCTGTCATCCTACGGGGCCAGCTCTGCCAAGCAGCGGAGCCCGCCCACGCCGTGCGCCGAGCACCTCGCGGTCAACGGATGCGCCGCCGAGCGCCCGCCGGTGCAGTCCCCCTTCGATCCCGCCAAGAGGGAAGGGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAGGTTGGAGCATGCTTGGTTAGCCAAGAGGGGATAATCCTAGGAATAGGGTATAATGGATTTCCTAGAGGTTGTTCTGACAATAAGCTACCCTGGGCAAAGAAATCTGCCAAGGGAGATCCATTGGAGACAAAATACCCCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGGTGAGCCTTCAATGAACGCAGCAAGTATATTTAGCTGATCTTATCTTTGTTTGTTGTCTCCTTATCTACATATACCTTTACTGTGCGGTTATGTGTAAGATTTCTGTTGATCATGGCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGGTGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAAATTATGGCTG] [+] EMBL AK101905 [TCCGGACCCAAGCCCCGCTCGAGCGAGCGCGATGGCCTCGGCGAGGGACCTCGCCGTAGCGTCCATCTCCGCCGCCGTGGGCGCCGCAGCCGCCGCGGCCGCGCTGCGCTTCCTGTCATCCTACGGGGCCAGCTCTGCCAAGCAGCGGAGCCCGCCCACGCCGTGCGCCGAGCACCTCGCGGTCAACGGATGCGCCGCCGAGCGCCCGCCGGTGCAGTCCCCCTTCGATCCCGCCAAGAGGGAAGGGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAGGTTGGAGCATGCTTGGTTAGCCAAGAGGGGATAATCCTAGGAATAGGGTATAATGGATTTCCTAGAGGTTGTTCTGACAATAAGCTACCCTGGGCAAAGAAATCTGCCAAGGGAGATCCATTGGAGACAAAATACCCCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGGTGAGCCTTCAATGAACGCAGCAAGTATATTTAGCTGATCTTATCTTTGTTTGTTGTCTCCTTATCTACATATACCTTTACTGTGCGGTTATGTGTAAGATTTCTGTTGATCATGGCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGGTGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAAATTATGGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_232#0 CTCTTCCTCCTCCGTCTCTGCATCTCACAGGGCAGGAGCAGCGTTGAACTAACCGGCGGC 60 consensus_232#1 ------------------------------------------------------------ consensus_232#0 GAGAGATGGCGGCGGGAGCAGGGGCATATAGGTCCCGAACCCTAGATCGGAAACCCGACA 120 consensus_232#1 ------------------------------------------------------------ consensus_232#0 GCGGCCCAGATCGGCGATGGGTGGCGGGAGGACCGGGATAGCTGCAAGCTGCGTCGGGAG 180 consensus_232#1 ------------------------------------------------------------ consensus_232#0 CTTGATGATGGTTGCGGCGACGATTCATCGGCGACGACGGCCGCGGCGATGGTTGCGGCG 240 consensus_232#1 ------------------------------------------------------------ consensus_232#0 GTGATTTGTCGGAAGCTCGATGTGACGGTGGCCGCGGCGAACTTGATGCGACGCCGGCAC 300 consensus_232#1 ------------------------------------------------------------ consensus_232#0 GGGGATGCGGCAAAGAGAAGAGAGGGGAAGAGGGTAAGGCCGGCGATGGTTGCAACGGCC 360 consensus_232#1 ------------------------------------------------------------ consensus_232#0 ATTCATCGGGAGCTTGACGATGGTTACGGCGGCGATTCGTCGGAAGCTCGACGCGATGGC 420 consensus_232#1 ------------------------------------------------------------ consensus_232#0 TGCCGCAGCGGACTCGATGCGACGCGGCGGCGGCCGCGGCGGACTCGATGCGATGCAACG 480 consensus_232#1 ------------------------------------------------------------ consensus_232#0 GCGGCAGCAGCGGACTCGATGCGACGCGACGGTGGCCGCGGCGGACTCGATGCGACGTGA 540 consensus_232#1 ------------------------------------------------------------ consensus_232#0 CGGCGGCAGCGGCGGACTCGATGCGACGCGACGGCGGCAGCGGCGGACTCGCTGGCACGG 600 consensus_232#1 ------------------------------------------------------------ consensus_232#0 AGATGTGGCAAAGCTTTGGAGAATACGAGAGATTCATTCATTCATGGCACGTCGCCGACG 660 consensus_232#1 ------------------------------------------------------------ consensus_232#0 AGTATCTTGTCGCCCTCGTCGTCACGAGCGTGTACTCGCCGGACGCCGCTGCCGCTGTCG 720 consensus_232#1 ----------------TCCGGACCCAAGCCC-CGCTCGAGCGAGCGCGATGGCCTCGGCG 43 * * * *** **** ** ** ** * * ** consensus_232#0 AGGAGCCCGGCAATCGCCTCCTCGCCTCCTCCCGTGCA-GCTCTTGCCGCCG--GCGGCG 777 consensus_232#1 AGGGACCTCGCCGTAGCGTCCATCTCCGCCGCCGTGGGCGCCGCAGCCGCCGCGGCCGCG 103 *** ** ** * ** *** * * ***** ** ******* ** *** consensus_232#0 GCGGACATGGTTGGGTCCCTTTGAGCCACCACGAGCAAGCAAGCAAAACGCCATCAAGAG 837 consensus_232#1 CTGCGCTTCCTGTCATCCTACGGGGCCAGCTCTGCCAAGCA-GCGGAGC-CCGCCCACGC 161 * * * * *** * **** * * ****** ** * * ** * * consensus_232#0 GGTGAGGGATTAGCGCCACCCTAAATTTGTTTAGC-CCGATCATACCCCTCCTAAATCAA 896 consensus_232#1 CGTGCGCCGAGCACCTCGCGGTCAACGGATGCGCCGCCGAGCGCCCGCCGGTGCAGTCC- 220 *** * * * * * ** * * **** * * ** * ** consensus_232#0 CGGTTAGATTAAATTGGTACCTCATGGTACCTCGTACCTCATAGTACCTCGTATCTCATG 956 consensus_232#1 CCCTTCGATCCCGCCAAGAGGGAAGGGTA-----TATCTCCTGGGACGAC-TACTTCATG 274 * ** *** * * **** ** *** * * ** * ** ***** consensus_232#0 GTACCTCGTAGTACCTCCTCAAGGATGGGAAAGATGCTCTTAGACTTTAGTTAGCTTGTA 1016 consensus_232#1 GCGA-TCGCGTTCCTTTC--------GGCCAAGCGGTCCAAGGATCCTAATCGGCAGGT- 324 * *** * * * * ** *** * * ** ** * ** ** consensus_232#0 CCCAATCCAGTTGCGTAAAATTTGTGTGAGAAGCCCTGGTGTTAATTCCTCTAAGCTTTA 1076 consensus_232#1 ----------TGGAGCATGCTTGGTTAGCCAAGA---GGGGATAATCCT----AGGAATA 367 * * * * ** ** * *** ** * **** * ** ** consensus_232#0 CACTGTGCTACACTACATATGCATTCCTTGAATACAAAAATAGTCTCCTATAGCAAGGCT 1136 consensus_232#1 GGGTATAATGGATTTCCTAGAGGTTGTTCTGACAATAAGCTACCCTG----GGCAAAG-- 421 * * * * * * ** ** * * * ** ** ** **** * consensus_232#0 TAGATGTTGAATTCTAAGTCCCTAATTGTGACCGTCATCTTTCACCCTGACAGCTATGTT 1196 consensus_232#1 -AAATCTGCCAAGGGAGATCC---ATTGGAGACAAAAT-----ACCC------CTATGTT 466 * ** * * * *** **** * ** **** ******* consensus_232#0 GTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGGTT 1256 consensus_232#1 GTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAG--- 523 ********************************************************* consensus_232#0 TGGACTTCTAATCTCCTACAAACTTAAAGCATCTCATTAATTTGCCTTTATAAGCTAAGA 1316 consensus_232#1 ------------------------------------------------------------ consensus_232#0 ATAATCTTGTGTTATCTTCTCTTTGCAGAAATTATATGTTACCATGTTCCCCTGCAATGA 1376 consensus_232#1 ----------------------------AAATTATATGTTACCATGTTCCCCTGCAATGA 555 ******************************** consensus_232#0 GTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAG 1436 consensus_232#1 GTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAG 615 ************************************************************ consensus_232#0 GATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGT 1496 consensus_232#1 GATTGACAACTCTGATTATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGT 675 ************************************************************ consensus_232#0 AAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCG 1556 consensus_232#1 AAAGGTTAGGAAACACCAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCG 735 ************************************************************ consensus_232#0 AAACGGTGAGCCTTCAATGAACGCAGCAAGTATATTTAGCTGATCTTATCTTTGTTTGTT 1616 consensus_232#1 AAACGGTGAGCCTTCAATGAACGCAGCAAGTATATTTAGCTGATCTTATCTTTGTTTGTT 795 ************************************************************ consensus_232#0 GTCTCCTTATCTACATATACCTTTACTGTGCGGTTATGTGTAAGATTTCTGTTGATCATG 1676 consensus_232#1 GTCTCCTTATCTACATATACCTTTACTGTGCGGTTATGTGTAAGATTTCTGTTGATCATG 855 ************************************************************ consensus_232#0 GCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGG 1736 consensus_232#1 GCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTCATCGATTGCCATATCCTCCGGGG 915 ************************************************************ consensus_232#0 TGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAA 1796 consensus_232#1 TGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTGAGACTACTAGATCATCAAAACAA 975 ************************************************************ consensus_232#0 ATTATGGCTGTGTTTAGTTCAGCGCAAAATTTAGATTTTGGTTGAAATTGAAGAT 1851 consensus_232#1 ATTATGGCTG--------------------------------------------- 985 ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||