These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1429 fasta sequence [CCCGCCACGTCTCCCCTCCCCGGCCATGGGAGCGGCCATGCTCCTCGCTCCCATGCCTCTCCTCCTCCTCGCCTCCACTCCCCTCGCCGCCGTCCACCTCCCCACCCGCTGCCGCCTCCGCCTGCAGCTCCTCTCCCGCGCCGCGCCCGAAGCCGCCTCCGCCACCACCACCACCACCACCGCGCCCGACAACCACTTCTCTGTCGAGGAATACCTCATCTCCAACTGCAATCTCACCCAGCCACAGGCCCACAAGGCGTCCAAGAGCATCGCCCACCTCAAGTCCCGCTCCAACCCCGACGCCGTCCTCGCCTTCCTCGCCGACTTCGGCCTCTCCCCCAAGGAGGTCGCGGCCATTGTTGCCTCCAACCCGCGCATCCTGTGCGCCCGCATCGACCGCTCCCTTGCACCCATCTGCTCGGAGCTCCGCGCCGTCGGCCTCTCCCCCTCCCAGATCGCCCGCCTCGCCCAGATCACCGGCCGCTACTTCCTCTGCCGCAGCTTCGTCTCCAAGGTGCGGTTCTGGCTCCCCCTCTTCGGCTCATCGGAGAGGCTTCTCCAGGCCAGCGACTGGAACTACTGGCTCCTCACCTCCGACCTCGAGAAGGTGGTCGAGCCCAACGTCTCCTTCCTCAAGGAATGCGGGCTAAGTGCTCGTGATATTTCCAAGCTGCTCGTGGCCGCGCCGCGGCTTGTCACCATGCACCCGGATTACGTCAAGGACGCCGTGCGGCGTGCCATCCAGCTCGGCGTGGCCCCGGGCTCCCAGATGTTCCGGCACGCGCTCTCCACCGCCGGCTGCATCGGCCAGGACAAGATCGACGCCAAGGTCGCCGTCCTGAAGGAGAGCCTCGGGTGGTCGCAGGAGGAGGTGAACCTGGCCGTGAGCAAGGCGCCGCGGATCCTGGTCGCGTCCGAGGAGAGGCTGCGCCGCACGCGGAGTTCTTGATCGACGAGGTCGGGCTGCAGCCGCAGTACGTCGCGCGGCGGTCGGTGCTGCTCATGTACAGCCTCGAGAGGAGGCTGGTGCCCCGCCATCTCGTGGTGAAACTTCTCAAGGAGAGGGGTCTGATCGAGCAAGACCGGTGCTTCTTCAACGCGGTGGCGCCAACTGAAGAGAAGTTCTTGGAGAAGTTTGTTGTCCCCTTTGAGGGGTGCGTCCCGGGTCTCGCCGACGCCTACGAGTCTGCCTGTGCCGGGAAGACGCCGGTGCAAGCTGAGTAGTGACCGGACTTGGGGGAGAACAATGGAGGTGTGTATGTGTGTGTGTCTCACTTCCATTGGATAACTTCATTCTACTGATCAACTATAGCAGGGATGGCAGATTCAATTCATGGTCATTTTAGTGTAGGTTTCTTGCAGTTGACAAGGAGGTGGATGTGTATAACAACCTTGAGAACTGTTCAGTTGTGGTTGAACAATGTTCAGT] [+] EMBL AK065868 [CCCGCCACGTCTCCCCTCCCCGGCCATGGGAGCGGCCATGCTCCTCGCTCCCATGCCTCTCCTCCTCCTCGCCTCCACTCCCCTCGCCGCCGTCCACCTCCCCACCCGCTGCCGCCTCCGCCTGCAGCTCCTCTCCCGCGCCGCGCCCGAAGCCGCCTCCGCCACCACCACCACCACCACCGCGCCCGACAACCACTTCTCTGTCGAGGAATACCTCATCTCCAACTGCAATCTCACCCAGCCACAGGCCCACAAGGCGTCCAAGAGCATCGCCCACCTCAAGTCCCGCTCCAACCCCGACGCCGTCCTCGCCTTCCTCGCCGACTTCGGCCTCTCCCCCAAGGAGGTCGCGGCCATTGTTGCCTCCAACCCGCGCATCCTGTGCGCCCGCATCGACCGCTCCCTTGCACCCATCTGCTCGGAGCTCCGCGCCGTCGGCCTCTCCCCCTCCCAGATCGCCCGCCTCGCCCAGATCACCGGCCGCTACTTCCTCTGCCGCAGCTTCGTCTCCAAGGTGCGGTTCTGGCTCCCCCTCTTCGGCTCATCGGAGAGGCTTCTCCAGGCCAGCGACTGGAACTACTGGCTCCTCACCTCCGACCTCGAGAAGGTGGTCGAGCCCAACGTCTCCTTCCTCAAGGAATGCGGGCTAAGTGCTCGTGATATTTCCAAGCTGCTCGTGGCCGCGCCGCGGCTTGTCACCATGCACCCGGATTACGTCAAGGACGCCGTGCGGCGTGCCATCCAGCTCGGCGTGGCCCCGGGCTCCCAGATGTTCCGGCACGCGCTCTCCACCGCCGGCTGCATCGGCCAGGACAAGATCGACGCCAAGGTCGCCGTCCTGAAGGAGAGCCTCGGGTGGTCGCAGGAGGAGGTGAACCTGGCCGTGAGCAAGGCGCCGCGGATCCTGGTCGCGTCCGAGGAGAGGCTGCGCCGCACGCGGAGTTCTTGATCGACGAGGTCGGGCTGCAGCCGCAGTACGTCGCGCGGCGGTCGGTGCTGCTCATGTACAGCCTCGAGAGGAGGCTGGTGCCCCGCCATCTCGTGGTGAAACTTCTCAAGGAGAGGGGTCTGATCGAGCAAGACCGGTGCTTCTTCAACGCGGTGGCGCCAACTGAAGAGAAGTTCTTGGAGAAGTTTGTTGTCCCCTTTGAGGGGTGCGTCCCGGGTCTCGCCGACGCCTACGAGTCTGCCTGTGCCGGGAAGACGCCGGTGCAAGCTGAGTAGTGACCGGACTTGGGGGAGAACAATGGAGGTGTGTATGTGTGTGTGTCTCACTTCCATTGGATAACTTCATTCTACTGATCAACTATAGCAGGGATGGCAGATTCAATTCATGGTCATTTTAGTGTAGGTTTCTTGCAGTTGACAAGGAGGTGGATGTGTATAACAACCTTGAGAACTGTTCAGTTGTGGTTGAACAATGTTCAGT] consensusID : consensus_2349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 947 fasta sequence [GTGCGGCGTGCCATCCAGCTCGGCGTGGCCCCGGGCTCCCAGATGTTCCGGCACGCGCTCTCCACCGCCGGCTGCATCGGCCAGGACAAGATCGACGCCAAGGTCGCCGTCCTGAAGGAGAGCCTCGGGTGGTCGCAGGAGGAGGTGAACCTGGCCGTGAGCAAGGCGCCGCGGATCCTGGTCGCGTCCGAGGAGAGGCTGCGCCGCAACGCGGAGTTCTTGATCGACGAGGTCGGGCTGCAGCCGCAGTACGTCGCGCGGCGGTCGGTGCTGCTCATGTACAGCCTCGAGAGGAGGCTGGTGCCCCGCCATCTCGTGGTGAAACTTCTCAAGGAGAGGGGTCTGATCGAGCAAGACCGGTGCTTCTTCAACGCGGTGGCGCCAACTGAAGAGAAGTTCTTGGAGAAGTTTGTTGTCCCCTTTGAGGGGTGCGTCCCGGGTCTCGCCGACGCCTACGAGTCTGCCTGTGCCGGGAAGACGCCGGTGCAAGCTGAGTAGTGACCGGACTTGGGGGAGGACAATGGAGGCTTACACTCTAGCTGGCTTCTGGCATGATCAGCGATCACGATGTCCTGATGTGCATCTTCCAATTCCAAGTTGAACGAGAGAAAGTGAAGAACCATCTGAGCAAAGATATAACTAGATAAATTGCGGGACTAGGGAAGAACACTCTACATAAGGAGATGGAAAAGGTTGATCTGGTTCTCAGCAAATCATCAGAATGAGGAGTGTTCCTCTACGGCATAGAACAAGTTGCGGCTGAAGCTTTAGAAGAGGTTATTTTTCAAGCTGTTCAACTGGATAGGCAGAGGCTTTCCTATCGTATACTAGCATGTTTCTTGGATTGCATGCCTACTGTTGCAAAGCAAAAACTTAGGCAACCCAAGATTAGAAAAAGCACTACTCCATATACTTCATTCACCCGTTTCTAAATATTTGACACCGTT] [+] EMBL AK064731 [GTGCGGCGTGCCATCCAGCTCGGCGTGGCCCCGGGCTCCCAGATGTTCCGGCACGCGCTCTCCACCGCCGGCTGCATCGGCCAGGACAAGATCGACGCCAAGGTCGCCGTCCTGAAGGAGAGCCTCGGGTGGTCGCAGGAGGAGGTGAACCTGGCCGTGAGCAAGGCGCCGCGGATCCTGGTCGCGTCCGAGGAGAGGCTGCGCCGCAACGCGGAGTTCTTGATCGACGAGGTCGGGCTGCAGCCGCAGTACGTCGCGCGGCGGTCGGTGCTGCTCATGTACAGCCTCGAGAGGAGGCTGGTGCCCCGCCATCTCGTGGTGAAACTTCTCAAGGAGAGGGGTCTGATCGAGCAAGACCGGTGCTTCTTCAACGCGGTGGCGCCAACTGAAGAGAAGTTCTTGGAGAAGTTTGTTGTCCCCTTTGAGGGGTGCGTCCCGGGTCTCGCCGACGCCTACGAGTCTGCCTGTGCCGGGAAGACGCCGGTGCAAGCTGAGTAGTGACCGGACTTGGGGGAGGACAATGGAGGCTTACACTCTAGCTGGCTTCTGGCATGATCAGCGATCACGATGTCCTGATGTGCATCTTCCAATTCCAAGTTGAACGAGAGAAAGTGAAGAACCATCTGAGCAAAGATATAACTAGATAAATTGCGGGACTAGGGAAGAACACTCTACATAAGGAGATGGAAAAGGTTGATCTGGTTCTCAGCAAATCATCAGAATGAGGAGTGTTCCTCTACGGCATAGAACAAGTTGCGGCTGAAGCTTTAGAAGAGGTTATTTTTCAAGCTGTTCAACTGGATAGGCAGAGGCTTTCCTATCGTATACTAGCATGTTTCTTGGATTGCATGCCTACTGTTGCAAAGCAAAAACTTAGGCAACCCAAGATTAGAAAAAGCACTACTCCATATACTTCATTCACCCGTTTCTAAATATTTGACACCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2349#0 CCCGCCACGTCTCCCCTCCCCGGCCATGGGAGCGGCCATGCTCCTCGCTCCCATGCCTCT 60 consensus_2349#1 ------------------------------------------------------------ consensus_2349#0 CCTCCTCCTCGCCTCCACTCCCCTCGCCGCCGTCCACCTCCCCACCCGCTGCCGCCTCCG 120 consensus_2349#1 ------------------------------------------------------------ consensus_2349#0 CCTGCAGCTCCTCTCCCGCGCCGCGCCCGAAGCCGCCTCCGCCACCACCACCACCACCAC 180 consensus_2349#1 ------------------------------------------------------------ consensus_2349#0 CGCGCCCGACAACCACTTCTCTGTCGAGGAATACCTCATCTCCAACTGCAATCTCACCCA 240 consensus_2349#1 ------------------------------------------------------------ consensus_2349#0 GCCACAGGCCCACAAGGCGTCCAAGAGCATCGCCCACCTCAAGTCCCGCTCCAACCCCGA 300 consensus_2349#1 ------------------------------------------------------------ consensus_2349#0 CGCCGTCCTCGCCTTCCTCGCCGACTTCGGCCTCTCCCCCAAGGAGGTCGCGGCCATTGT 360 consensus_2349#1 ------------------------------------------------------------ consensus_2349#0 TGCCTCCAACCCGCGCATCCTGTGCGCCCGCATCGACCGCTCCCTTGCACCCATCTGCTC 420 consensus_2349#1 ------------------------------------------------------------ consensus_2349#0 GGAGCTCCGCGCCGTCGGCCTCTCCCCCTCCCAGATCGCCCGCCTCGCCCAGATCACCGG 480 consensus_2349#1 ------------------------------------------------------------ consensus_2349#0 CCGCTACTTCCTCTGCCGCAGCTTCGTCTCCAAGGTGCGGTTCTGGCTCCCCCTCTTCGG 540 consensus_2349#1 ------------------------------------------------------------ consensus_2349#0 CTCATCGGAGAGGCTTCTCCAGGCCAGCGACTGGAACTACTGGCTCCTCACCTCCGACCT 600 consensus_2349#1 ------------------------------------------------------------ consensus_2349#0 CGAGAAGGTGGTCGAGCCCAACGTCTCCTTCCTCAAGGAATGCGGGCTAAGTGCTCGTGA 660 consensus_2349#1 ------------------------------------------------------------ consensus_2349#0 TATTTCCAAGCTGCTCGTGGCCGCGCCGCGGCTTGTCACCATGCACCCGGATTACGTCAA 720 consensus_2349#1 ------------------------------------------------------------ consensus_2349#0 GGACGCCGTGCGGCGTGCCATCCAGCTCGGCGTGGCCCCGGGCTCCCAGATGTTCCGGCA 780 consensus_2349#1 -------GTGCGGCGTGCCATCCAGCTCGGCGTGGCCCCGGGCTCCCAGATGTTCCGGCA 53 ***************************************************** consensus_2349#0 CGCGCTCTCCACCGCCGGCTGCATCGGCCAGGACAAGATCGACGCCAAGGTCGCCGTCCT 840 consensus_2349#1 CGCGCTCTCCACCGCCGGCTGCATCGGCCAGGACAAGATCGACGCCAAGGTCGCCGTCCT 113 ************************************************************ consensus_2349#0 GAAGGAGAGCCTCGGGTGGTCGCAGGAGGAGGTGAACCTGGCCGTGAGCAAGGCGCCGCG 900 consensus_2349#1 GAAGGAGAGCCTCGGGTGGTCGCAGGAGGAGGTGAACCTGGCCGTGAGCAAGGCGCCGCG 173 ************************************************************ consensus_2349#0 GATCCTGGTCGCGTCCGAGGAGAGGCTGCGCCGCA-CGCGGAGTTCTTGATCGACGAGGT 959 consensus_2349#1 GATCCTGGTCGCGTCCGAGGAGAGGCTGCGCCGCAACGCGGAGTTCTTGATCGACGAGGT 233 *********************************** ************************ consensus_2349#0 CGGGCTGCAGCCGCAGTACGTCGCGCGGCGGTCGGTGCTGCTCATGTACAGCCTCGAGAG 1019 consensus_2349#1 CGGGCTGCAGCCGCAGTACGTCGCGCGGCGGTCGGTGCTGCTCATGTACAGCCTCGAGAG 293 ************************************************************ consensus_2349#0 GAGGCTGGTGCCCCGCCATCTCGTGGTGAAACTTCTCAAGGAGAGGGGTCTGATCGAGCA 1079 consensus_2349#1 GAGGCTGGTGCCCCGCCATCTCGTGGTGAAACTTCTCAAGGAGAGGGGTCTGATCGAGCA 353 ************************************************************ consensus_2349#0 AGACCGGTGCTTCTTCAACGCGGTGGCGCCAACTGAAGAGAAGTTCTTGGAGAAGTTTGT 1139 consensus_2349#1 AGACCGGTGCTTCTTCAACGCGGTGGCGCCAACTGAAGAGAAGTTCTTGGAGAAGTTTGT 413 ************************************************************ consensus_2349#0 TGTCCCCTTTGAGGGGTGCGTCCCGGGTCTCGCCGACGCCTACGAGTCTGCCTGTGCCGG 1199 consensus_2349#1 TGTCCCCTTTGAGGGGTGCGTCCCGGGTCTCGCCGACGCCTACGAGTCTGCCTGTGCCGG 473 ************************************************************ consensus_2349#0 GAAGACGCCGGTGCAAGCTGAGTAGTGACCGGACTTGGGGGAGAACAATGGAGGTGTGTA 1259 consensus_2349#1 GAAGACGCCGGTGCAAGCTGAGTAGTGACCGGACTTGGGGGAGGACAATGGAGGCTTACA 533 ******************************************* ********** * * consensus_2349#0 -TGTGTGTGTGTCTCACTTCCATTGG--ATAACTTCATTCTACTGATCAACT----ATAG 1312 consensus_2349#1 CTCTAGCTGGCTTCTGGCATGATCAGCGATCACGATGTCCTGATGTGCATCTTCCAATTC 593 * * ** * ** * ** ** * ** ** ** ** ** consensus_2349#0 CAGGGATGGC-AGATTCAATTCATGGTCATTTTAGTGTAGGTTTCTTGCAGTTGACAAGG 1371 consensus_2349#1 CAAGTTGAACGAGAGAAAGTGAAGAACCATCTGAGCAAAGATATAACTAGATAAATTGCG 653 ** * * *** * * * *** * ** ** * * * * * consensus_2349#0 AGGTGGATGTGTATAACAACCTTGAGAACTGTTCAGTTGTGGTTGAAC-AATGTTCAGT- 1429 consensus_2349#1 GGACTA--GGGAAGAACACTCTACATAAGGAGATGGAAAAGGTTGATCTGGTTCTCAGCA 711 * * * * **** ** * ** * ****** * * **** consensus_2349#0 ------------------------------------------------------------ consensus_2349#1 AATCATCAGAATGAGGAGTGTTCCTCTACGGCATAGAACAAGTTGCGGCTGAAGCTTTAG 771 consensus_2349#0 ------------------------------------------------------------ consensus_2349#1 AAGAGGTTATTTTTCAAGCTGTTCAACTGGATAGGCAGAGGCTTTCCTATCGTATACTAG 831 consensus_2349#0 ------------------------------------------------------------ consensus_2349#1 CATGTTTCTTGGATTGCATGCCTACTGTTGCAAAGCAAAAACTTAGGCAACCCAAGATTA 891 consensus_2349#0 -------------------------------------------------------- consensus_2349#1 GAAAAAGCACTACTCCATATACTTCATTCACCCGTTTCTAAATATTTGACACCGTT 947 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||