These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2357#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1802 fasta sequence [TTGGCTGGTTGGTCGGCGAATTGCACATCTTGGGGCGACCGATCGGCGGCCGGCGGGCGAAGCAACCAAGGCCCAAAAGGGAGGGAAAAAACCTTGGTTGTGTGTGTGCCGCCGCGAGCCCGTGACGGCGCCCTCCGGCACGCGATAGGGAGGATGCCGTACTGCGTGGTCAGCCACGGCGACCCATCGGCGGCGGCGGCGGCGGCCGGCGAGGAGGGAGATGTGCGGATTTTCTACCAGAGATACGGCCATGGCGGCACCAAGGTGCTCCTCATCATCGGGTTCGCGGGGACGCACGAGTCGTGGGGCCCGCAGGTGAAGGGCCTGACGGGCGCCGTCGAGCCCGTCGACGAGGAGGGCGCCGAGGTCTGCTGCTTCGACAACCGCGGCATTGGCCGGAGCTCCGTGCCGCCGCACAAATCGCAGTACACGTAATGCTCTGCTCTTTACCACCCATTGAATTCTCTGACAGAGACAGAGATACTAGTCGAGTTCTTTCTAATCTTCTCCCAACATCAAATATCCAAATAAAATCATTTCATCTGCTCGATTCTTCGCAGCACGGTGATCATGGCGAAGGACGCGCTAGCATTAATGGCTCATCTAGGGTGGCGGAAAGCACACGTTTTCGGTCACTCCATGGGGTCCATGATAGCTTCCAAGTTGGCCGCCATTGCGCCGGAGCGTGTCGCTTCGCTGGCGTTGCTCAACACCACCGGAGGTGGCTACCAATGTATCCCCAAGATTGATTGGCAGACCATATCCCTCGCATGTCGTTTTCTAAGAGCAAGAACTCCAGAGCAGAGAGCTGGTGTTGATCTTGATGTTCATTACACGAGGGAGTACCTCGATGAAATTGTTGGATCAAATACCAGAAGACAAATGCTTTACCAGGAATATGTGAAAGGTTTGTCATCATGTGGAATGCAATCAAGACATGGATATGAAGGACAACTGAATGCATGTTGGACGCATAAGCTTACACAGAAAGAACTAGACCGGATTCGTTCATCAGGTTTTCTTATTCTAGTTATACACGGAAGGGATGATGTTGTAGCTCAGTTGTATCATGCAAGGAGACTAGCAGAGAAGCTCCAGCCTGCTGCTAAACTGGTTGAACTCCATGGAGGCCACCTGGTGAGCCACGAAAGAACAGCTGAGGTTAATATGTCCCTCATGGAGATGATAAAAGCATCAAAATCAAATACAGATCAGGGGGAATGGTCAAACCTTCCTAAGAAGTCTGATGATCTACTTCTTGCTGGATCAGATAGTCGTCTTGCTAAACGAGAATGCAACATCATCGTTATATACAATCTACTTGGGAAGTTGCAACTCATTTTGCTTTTCTTCTTTGGAGTATTTTATATTATTCTTGAGCATGCTAGGAGGGTACTAAGAGTTTTGAAGCCTGTGAGAGTATCAGCTACCAGCTTATAGTCAAACAAGGGATTTTTATTTTCAAGGCTCTTTTCGACGTCTTCAGTTCCATTTCTGAATTTTGCAGCAGCACAGAGATTCTCGGTAACTAAGAATTTACTGCGGCATAGAAATTAGTCAGCGAATAATTGCAATATAAGGCCATTCATTCTTCGGGAAAGTGTGGATTTGAAGAGTTCTGATTTGTATGGTATTTGTTGTACAGGGTTAAAATTACAGGTTGGTCCTTCTAGGAATTGTTTGGTAATTTATCTCTCCTTTTATTAATGTGGGAGAGAAAATTGCCTGCAATCTATTGAGGATGTGTGTTGTCCAAAACATAAATGGAGCATACATTTTTGCAATGAAAAATTCCTTTTCCA] [+] EMBL AK066972 [TTGGCTGGTTGGTCGGCGAATTGCACATCTTGGGGCGACCGATCGGCGGCCGGCGGGCGAAGCAACCAAGGCCCAAAAGGGAGGGAAAAAACCTTGGTTGTGTGTGTGCCGCCGCGAGCCCGTGACGGCGCCCTCCGGCACGCGATAGGGAGGATGCCGTACTGCGTGGTCAGCCACGGCGACCCATCGGCGGCGGCGGCGGCGGCCGGCGAGGAGGGAGATGTGCGGATTTTCTACCAGAGATACGGCCATGGCGGCACCAAGGTGCTCCTCATCATCGGGTTCGCGGGGACGCACGAGTCGTGGGGCCCGCAGGTGAAGGGCCTGACGGGCGCCGTCGAGCCCGTCGACGAGGAGGGCGCCGAGGTCTGCTGCTTCGACAACCGCGGCATTGGCCGGAGCTCCGTGCCGCCGCACAAATCGCAGTACACGTAATGCTCTGCTCTTTACCACCCATTGAATTCTCTGACAGAGACAGAGATACTAGTCGAGTTCTTTCTAATCTTCTCCCAACATCAAATATCCAAATAAAATCATTTCATCTGCTCGATTCTTCGCAGCACGGTGATCATGGCGAAGGACGCGCTAGCATTAATGGCTCATCTAGGGTGGCGGAAAGCACACGTTTTCGGTCACTCCATGGGGTCCATGATAGCTTCCAAGTTGGCCGCCATTGCGCCGGAGCGTGTCGCTTCGCTGGCGTTGCTCAACACCACCGGAGGTGGCTACCAATGTATCCCCAAGATTGATTGGCAGACCATATCCCTCGCATGTCGTTTTCTAAGAGCAAGAACTCCAGAGCAGAGAGCTGGTGTTGATCTTGATGTTCATTACACGAGGGAGTACCTCGATGAAATTGTTGGATCAAATACCAGAAGACAAATGCTTTACCAGGAATATGTGAAAGGTTTGTCATCATGTGGAATGCAATCAAGACATGGATATGAAGGACAACTGAATGCATGTTGGACGCATAAGCTTACACAGAAAGAACTAGACCGGATTCGTTCATCAGGTTTTCTTATTCTAGTTATACACGGAAGGGATGATGTTGTAGCTCAGTTGTATCATGCAAGGAGACTAGCAGAGAAGCTCCAGCCTGCTGCTAAACTGGTTGAACTCCATGGAGGCCACCTGGTGAGCCACGAAAGAACAGCTGAGGTTAATATGTCCCTCATGGAGATGATAAAAGCATCAAAATCAAATACAGATCAGGGGGAATGGTCAAACCTTCCTAAGAAGTCTGATGATCTACTTCTTGCTGGATCAGATAGTCGTCTTGCTAAACGAGAATGCAACATCATCGTTATATACAATCTACTTGGGAAGTTGCAACTCATTTTGCTTTTCTTCTTTGGAGTATTTTATATTATTCTTGAGCATGCTAGGAGGGTACTAAGAGTTTTGAAGCCTGTGAGAGTATCAGCTACCAGCTTATAGTCAAACAAGGGATTTTTATTTTCAAGGCTCTTTTCGACGTCTTCAGTTCCATTTCTGAATTTTGCAGCAGCACAGAGATTCTCGGTAACTAAGAATTTACTGCGGCATAGAAATTAGTCAGCGAATAATTGCAATATAAGGCCATTCATTCTTCGGGAAAGTGTGGATTTGAAGAGTTCTGATTTGTATGGTATTTGTTGTACAGGGTTAAAATTACAGGTTGGTCCTTCTAGGAATTGTTTGGTAATTTATCTCTCCTTTTATTAATGTGGGAGAGAAAATTGCCTGCAATCTATTGAGGATGTGTGTTGTCCAAAACATAAATGGAGCATACATTTTTGCAATGAAAAATTCCTTTTCCA] consensusID : consensus_2357#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence [ACTTACATCTTGGGGCGACCGATCGGCGGCCGGCGGGCGAAGCAACCAAGGCCCAAAAGGGAGGGAAAAAACCTTGGTTGTGTGTGTGCCGCCGCGAGCCCGTGACGGCGCCCTCCGGCACGCGATAGGGAGGATGCCGTACTGCGTGGTCAGCCACGGCGACCCATCGGCGGCGGCGGCGGCGGCCGGCGAGGAGGGAGATGTGCGGATTTTCTACCAGAGATACGGCCATGGCGGCACCAAGGTGCTCCTCATCATCGGGTTCGCGGGGACGCACGAGTCGTGGGGCCCGCAGGTGAAGGGCCTGACGGGCGCCGTCGAGCCCGTCGACGAGGAGTCCCCCGCCGGCGACGATGGCGCCGCCGGGGAGGGCGCCGAGGTCTGCTGCTTCGACAACCGCGGCATTGGCCGGAGCTCCGTGCCGCCGCACAAATCGCAGTACACCACGGTGATCATGGCGAAGGACGCGCTAGCATTAATGGATCATCTAGGGTGGCGGAAAGCACACGTTTTCGGTCACTCCATGGGGTCCATGATAGCTTCCAAGTTGGCCGCCATTGCGCCGGAGCGTGTCGCTTCGCTGGCGTTGCTCAACACCACCGGAGGTGGCTACCAATGTATCCCCAAGATTGATTGGCAGACCATATCCCTCGCATGTCGTTTTCTAAGAGCAAGAACTCCAGAGCAGAGAGCTGGTGTTGATCTTGATGTTCATTACACGAGGGAGTACCTCGATGAAATTGTTGGATCAAATACCAGAAGACAAATGCTTTACCAGGAATATGTGAAAGGTT] [+] EMBL CB659175 [ACTTACATCTTGGGGCGACCGATCGGCGGCCGGCGGGCGAAGCAACCAAGGCCCAAAAGGGAGGGAAAAAACCTTGGTTGTGTGTGTGCCGCCGCGAGCCCGTGACGGCGCCCTCCGGCACGCGATAGGGAGGATGCCGTACTGCGTGGTCAGCCACGGCGACCCATCGGCGGCGGCGGCGGCGGCCGGCGAGGAGGGAGATGTGCGGATTTTCTACCAGAGATACGGCCATGGCGGCACCAAGGTGCTCCTCATCATCGGGTTCGCGGGGACGCACGAGTCGTGGGGCCCGCAGGTGAAGGGCCTGACGGGCGCCGTCGAGCCCGTCGACGAGGAGTCCCCCGCCGGCGACGATGGCGCCGCCGGGGAGGGCGCCGAGGTCTGCTGCTTCGACAACCGCGGCATTGGCCGGAGCTCCGTGCCGCCGCACAAATCGCAGTACACCACGGTGATCATGGCGAAGGACGCGCTAGCATTAATGGATCATCTAGGGTGGCGGAAAGCACACGTTTTCGGTCACTCCATGGGGTCCATGATAGCTTCCAAGTTGGCCGCCATTGCGCCGGAGCGTGTCGCTTCGCTGGCGTTGCTCAACACCACCGGAGGTGGCTACCAATGTATCCCCAAGATTGATTGGCAGACCATATCCCTCGCATGTCGTTTTCTAAGAGCAAGAACTCCAGAGCAGAGAGCTGGTGTTGATCTTGATGTTCATTACACGAGGGAGTACCTCGATGAAATTGTTGGATCAAATACCAGAAGACAAATGCTTTACCAGGAATATGTGAAAGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2357#0 TTGGCTGGTTGGTCGGCGAATTGCACATCTTGGGGCGACCGATCGGCGGCCGGCGGGCGA 60 consensus_2357#1 -------------------ACT-TACATCTTGGGGCGACCGATCGGCGGCCGGCGGGCGA 40 * * ************************************ consensus_2357#0 AGCAACCAAGGCCCAAAAGGGAGGGAAAAAACCTTGGTTGTGTGTGTGCCGCCGCGAGCC 120 consensus_2357#1 AGCAACCAAGGCCCAAAAGGGAGGGAAAAAACCTTGGTTGTGTGTGTGCCGCCGCGAGCC 100 ************************************************************ consensus_2357#0 CGTGACGGCGCCCTCCGGCACGCGATAGGGAGGATGCCGTACTGCGTGGTCAGCCACGGC 180 consensus_2357#1 CGTGACGGCGCCCTCCGGCACGCGATAGGGAGGATGCCGTACTGCGTGGTCAGCCACGGC 160 ************************************************************ consensus_2357#0 GACCCATCGGCGGCGGCGGCGGCGGCCGGCGAGGAGGGAGATGTGCGGATTTTCTACCAG 240 consensus_2357#1 GACCCATCGGCGGCGGCGGCGGCGGCCGGCGAGGAGGGAGATGTGCGGATTTTCTACCAG 220 ************************************************************ consensus_2357#0 AGATACGGCCATGGCGGCACCAAGGTGCTCCTCATCATCGGGTTCGCGGGGACGCACGAG 300 consensus_2357#1 AGATACGGCCATGGCGGCACCAAGGTGCTCCTCATCATCGGGTTCGCGGGGACGCACGAG 280 ************************************************************ consensus_2357#0 TCGTGGGGCCCGCAGGTGAAGGGCCTGACGGGCGCCGTCGAGCCCGTCGACGAGGAGGGC 360 consensus_2357#1 TCGTGGGGCCCGCAGGTGAAGGGCCTGACGGGCGCCGTCGAGCCCGTCGACGAGGAGTCC 340 ********************************************************* * consensus_2357#0 GCCGAGGTCTGCTGCTTCGACAACCGCGGCATTGGCCGGAGCTCCGTGCCGCCGCACAAA 420 consensus_2357#1 CCCG------------CCGGCGACGATGGC-----------------GCCGCCGGGGAGG 371 *** ** * ** *** ******* * consensus_2357#0 TCGCAGTACACGTAATGCTCTGCTCTTTACCACCCATTGAATTCTCTGACAGAGACAGAG 480 consensus_2357#1 GCGCCG---------AGGTCTGCTGCTT------------------CGACA---ACCGCG 401 *** * * ****** ** **** ** * * consensus_2357#0 ATACTAGTCGAGTTCTTTCTAATCTTCTCCCAACATCAAATATCCAAATAAAATCATTTC 540 consensus_2357#1 GCATTGGCCGG----------AGCTCCGTGCCGCCGCACAAATCGCAGTA---------- 441 * * * ** * ** * * * ** * *** * ** consensus_2357#0 ATCTGCTCGATTCTTCGCAGCACGGTGATCATGGCGAAGGACGCGCTAGCATTAATGGCT 600 consensus_2357#1 -----------------CACCACGGTGATCATGGCGAAGGACGCGCTAGCATTAATGGAT 484 ** ************************************** * consensus_2357#0 CATCTAGGGTGGCGGAAAGCACACGTTTTCGGTCACTCCATGGGGTCCATGATAGCTTCC 660 consensus_2357#1 CATCTAGGGTGGCGGAAAGCACACGTTTTCGGTCACTCCATGGGGTCCATGATAGCTTCC 544 ************************************************************ consensus_2357#0 AAGTTGGCCGCCATTGCGCCGGAGCGTGTCGCTTCGCTGGCGTTGCTCAACACCACCGGA 720 consensus_2357#1 AAGTTGGCCGCCATTGCGCCGGAGCGTGTCGCTTCGCTGGCGTTGCTCAACACCACCGGA 604 ************************************************************ consensus_2357#0 GGTGGCTACCAATGTATCCCCAAGATTGATTGGCAGACCATATCCCTCGCATGTCGTTTT 780 consensus_2357#1 GGTGGCTACCAATGTATCCCCAAGATTGATTGGCAGACCATATCCCTCGCATGTCGTTTT 664 ************************************************************ consensus_2357#0 CTAAGAGCAAGAACTCCAGAGCAGAGAGCTGGTGTTGATCTTGATGTTCATTACACGAGG 840 consensus_2357#1 CTAAGAGCAAGAACTCCAGAGCAGAGAGCTGGTGTTGATCTTGATGTTCATTACACGAGG 724 ************************************************************ consensus_2357#0 GAGTACCTCGATGAAATTGTTGGATCAAATACCAGAAGACAAATGCTTTACCAGGAATAT 900 consensus_2357#1 GAGTACCTCGATGAAATTGTTGGATCAAATACCAGAAGACAAATGCTTTACCAGGAATAT 784 ************************************************************ consensus_2357#0 GTGAAAGGTTTGTCATCATGTGGAATGCAATCAAGACATGGATATGAAGGACAACTGAAT 960 consensus_2357#1 GTGAAAGGTT-------------------------------------------------- 794 ********** consensus_2357#0 GCATGTTGGACGCATAAGCTTACACAGAAAGAACTAGACCGGATTCGTTCATCAGGTTTT 1020 consensus_2357#1 ------------------------------------------------------------ consensus_2357#0 CTTATTCTAGTTATACACGGAAGGGATGATGTTGTAGCTCAGTTGTATCATGCAAGGAGA 1080 consensus_2357#1 ------------------------------------------------------------ consensus_2357#0 CTAGCAGAGAAGCTCCAGCCTGCTGCTAAACTGGTTGAACTCCATGGAGGCCACCTGGTG 1140 consensus_2357#1 ------------------------------------------------------------ consensus_2357#0 AGCCACGAAAGAACAGCTGAGGTTAATATGTCCCTCATGGAGATGATAAAAGCATCAAAA 1200 consensus_2357#1 ------------------------------------------------------------ consensus_2357#0 TCAAATACAGATCAGGGGGAATGGTCAAACCTTCCTAAGAAGTCTGATGATCTACTTCTT 1260 consensus_2357#1 ------------------------------------------------------------ consensus_2357#0 GCTGGATCAGATAGTCGTCTTGCTAAACGAGAATGCAACATCATCGTTATATACAATCTA 1320 consensus_2357#1 ------------------------------------------------------------ consensus_2357#0 CTTGGGAAGTTGCAACTCATTTTGCTTTTCTTCTTTGGAGTATTTTATATTATTCTTGAG 1380 consensus_2357#1 ------------------------------------------------------------ consensus_2357#0 CATGCTAGGAGGGTACTAAGAGTTTTGAAGCCTGTGAGAGTATCAGCTACCAGCTTATAG 1440 consensus_2357#1 ------------------------------------------------------------ consensus_2357#0 TCAAACAAGGGATTTTTATTTTCAAGGCTCTTTTCGACGTCTTCAGTTCCATTTCTGAAT 1500 consensus_2357#1 ------------------------------------------------------------ consensus_2357#0 TTTGCAGCAGCACAGAGATTCTCGGTAACTAAGAATTTACTGCGGCATAGAAATTAGTCA 1560 consensus_2357#1 ------------------------------------------------------------ consensus_2357#0 GCGAATAATTGCAATATAAGGCCATTCATTCTTCGGGAAAGTGTGGATTTGAAGAGTTCT 1620 consensus_2357#1 ------------------------------------------------------------ consensus_2357#0 GATTTGTATGGTATTTGTTGTACAGGGTTAAAATTACAGGTTGGTCCTTCTAGGAATTGT 1680 consensus_2357#1 ------------------------------------------------------------ consensus_2357#0 TTGGTAATTTATCTCTCCTTTTATTAATGTGGGAGAGAAAATTGCCTGCAATCTATTGAG 1740 consensus_2357#1 ------------------------------------------------------------ consensus_2357#0 GATGTGTGTTGTCCAAAACATAAATGGAGCATACATTTTTGCAATGAAAAATTCCTTTTC 1800 consensus_2357#1 ------------------------------------------------------------ consensus_2357#0 CA 1802 consensus_2357#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||